Decomposition of in situ particulate absorption spectra

Methods in Oceanography

Volumn 7, Issue , 2013, Pages 110-124

  Chase, Alison ^a   Boss, Emmanuel ^a   Zaneveld, Ronald ^b   Bricaud, Annick ^c   Claustre, Herve ^c   Ras, Josephine ^c   Dall'Olmo, Giorgio ^d   Westberry, Toby K ^e  

^a UNIVERSITY OF MAINE   (United States)

^b WET Labs Inc   (United States)

^c LABORATOIRE D OCÉANOGRAPHIE DE VILLEFRANCHE   (France)

^d PLYMOUTH MARINE LABORATORY   (United Kingdom)

^e OREGON STATE UNIVERSITY   (United States)

Author keywords

Bio optics; Particulate absorption; Phytoplankton pigments; Spectral decomposition

Indexed keywords

EID: 84900393573     PISSN: 22111220     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mio.2014.02.002     Document Type: Article

References (36)

1. Aas E. Refractive index of phytoplankton derived from its metabolite composition. J. Plankton Res. 1996, 18(12):2223-2249.
2. Bidigare R.R., Morrow J.H., Kiefer D.A. Derivative analysis of spectral absorption by photosynthetic pigments in the western Sargasso. Sea, J. Mar. Res. 1989, 47:323-341.
3. Bidigare R.R., Ondrusek M.E., Morrow J.H., Kiefer D.A. In vivo absorption properties of algal pigments. Proc. SPIE 1990, 1302:290-302.
4. Boss E., Picheral M., Leeuw T., Chase A., Karsenti E., Gorsky G., Taylor L., Slade W., Ras J., Claustre H. The characteristics of particulate absorption, scattering and attenuation coefficients in the surface ocean; contribution of the Tara Oceans expedition. Methods in Oceanography 2013, 10.1016/j.mio.2013.11.002.
5. Boss E., Twardowski M.S., Herring S. Shape of the particulate beam attenuation spectrum and its relation to the size distribution of oceanic particles. Appl. Opt. 2001, 40:4885-4893.
6. Bricaud A., Claustre H., Ras J., Oubelkheir K. Natural variability of phytoplanktonic absorption in oceanic waters: influence of the size structure of algal populations. J. Geophys. Res. 2004, 109:C11010.
7. Bricaud A., Mejia C., Blondeau-Patissier D., Claustre H., Crepon M., Thiria S. Retrieval of pigment concentrations and size structure of algal populations from their absorption spectra using multilayered perceptrons. Appl. Optics. 2007, 46(8):1251-1260.
8. Bricaud A., Morel A., Babin M., Allali K., Claustre H. Variations of light absorption by suspended particles with chlorophyll a concentration in oceanic (case 1) waters: analysis and implications for bio-optical models. J. Geophys. Res. 1998, 103:31033-31044.
9. Chekalyuk A., Hafez M. Next generation Advanced Laser Fluorometry (ALF) for characterization of natural aquatic environments: new instruments. Opt. Express. 2013, 21(12):14181-14201.
10. Chekalyuk A., Landry M., Goericke R., Taylor A.G., Hafez M. Laser fluorescence analysis of phytoplankton across a frontal zone in the California Current ecosystem. J. Plankton Res. 2012, 34(9):761-777.
11. Dall'Olmo G., Westberry T.K., Behrenfeld M.J., Boss E., Slade W.H. Significant contribution of large particles to optical backscattering in the open ocean. Biogeosciences 2009, 6:947-967.
12. Descy J.P., Sarmento H., Higgins H.W. Variability of phytoplankton pigment ratios across aquatic environments. Eur. J. Phycol. 2009, 44(3):319-330.
13. Duysens L.N.M. The flattening of the absorption spectrum of suspensions, as compared to that of solutions. Biochim. Biophys. Acta 1956, 19:1-12.
14. Higgins H.W., Mackey D.J. Algal class abundances, estimated from chlorophyll and carotenoid pigments, in the western Equatorial Pacific under El Nino and non-El Nino conditions. Deep-Sea Res. 2000, PT I. 47:1461-1483.
15. Hoepffner N., Sathyendranath S. Effect of pigment composition on absorption properties of phytoplankton. Mar. Ecol. Prog. Ser. 1991, 73:11-23.
16. Hoepffner N., Sathyendranath S. Determination of the major groups of phytoplankton pigments from the absorption spectra of total particulate matter. J. Geophys. Res. 1993, 98(C12):22,789-22,803.
17. Hooker S.B., Heukelem L.V., Thomas C.S., Claustre H., Ras J., Schlüter L., Clementson L., van der Linde D., Eker-Develi E., Berthon J.-F., Barlow R., Sessions H., Ismail H., Perl J. The Third SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-3) 2009, National Aeronautics and Space Administration, Goddard.
18. Iturriaga R., Siegel D.A. Microphotometric characterization of phytoplankton and detrital absorption properties in the Sargasso Sea. Limnol. Oceanogr. 1989, 34:1706-1726.
19. Johnsen G., Samset O., Granskog L., Sakshaug E. In vivo absorption characteristics in 10 classes of bloom-forming phytoplankton: taxonomic characteristics and responses to photoadaptation by means of discriminant and HPLC analysis. Mar. Ecol. Prog. Ser. 1994, 105:149-157.
20. Karsenti E., Acinas S.G., Bork P., Bowler C., De Vargas C., et al. A holistic approach to marine ecosystems biology. PLoS Biol. 2011, 9(10):e1001177.
21. Kirk J.T.O. A theoretical analysis of the contribution of algal cells to the attenuation of light within waters, II, spherical cells. New Phytol. 1975, 75:21-36.
22. Kirkpatrick G., Millie D.F., Moline M.A., Schofield O. Optical discrimination of a phytoplankton species in natural mixed populations. Limnol. Oceanogr. 2000, 45:467-471.
23. Lohrenz S.E., Weidemann A.D., Tuel M. Phytoplankton spectral absorption as influenced by community size structure and pigment composition. J. Plankton Res. 2003, 25(1):35-61.
24. Mackey M.D., Mackey D.J., Higgins H.W., Wright S.W. CHEMTAX - a program for estimating class abundances from chemical markers: application to HPLC measurements of phytoplankton. Mar. Ecol. Prog.-Ser. 1996, 144:265-283.
25. Millie D.F., Schofield O.M., Kirkpatrick G.J., Johnsen G., Tester P.A., Vinyard B.T. Detection of harmful algal blooms using photopigments and absorption signatures: a case study of the Florida red-tide dinoflagellate Gymnodinium breve. Limnol. Oceanogr. 1997, 42:1240-1251.
26. Moisan J.R., Moisan T.A.H., Linkswiler M.A. An inverse modeling approach to estimating phytoplankton pigment concentrations from phytoplankton absorption spectra. J. Geophys. Res. 2011, 116:C09018.
27. Moore C., Bruce E.J., Pegau W.S., Weidemann A.D. WETlabs ac-9: Field Calibration Protocol, Deployment Techniques, Data Processing, and Design Improvements, Ocean Optics XIII. SPIE Proceedings 1997, Vol. 2963:725-730. International Society for Optical Engineering. S.G. Ackleson (Ed.).
28. Morel A., Bricaud A. Theoretical results concerning light absorption in a discrete medium, and application to specific absorption of phytoplankton. Deep Sea Res. 1981, 28:1375-1393.
29. Organelli E., Bricaud A., Antoine D., Uitz J. Multivariate approach for the retrieval of phytoplankton size structure from measured light absorption spectra in the Mediterranean Sea (BOUSSOLE site). Appl. Opt. 2013, 52:2257-2273.
30. Ras J., Uitz J., Claustre H. Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: comparison between in situ and modelled data. Biogeosciences 2008, 5:353-369.
31. Rhoades B., Derr A., Moore C., Zaneveld J.R. The AC-spectra, an instrument for hyperspectral characterization of inherent optical properties in natural waters. Ocean Optics XVII, Fremantle, Australia, October 25-29 2004.
32. Slade W., Boss E., Dall'Olmo G., Langner M.R., Loftin J., Behrenfeld M.J., Roesler C., Westberry T.K. Underway and moored methods for improving accuracy in measurement of spectral particulate absorption and attenuation. J. Atmos. Ocean. Technol. 2010, 27(10):1733-1746.
33. Sullivan J.M., Twardowski M.S., Zaneveld J.R.V., Moore C., Barnard A., Donaghay P., Rhoades B. The hyperspectral temperature and salinity dependencies of absorption by water and heavy water in the 400-750 nm spectral range. Appl. Opt. 2006, 45:5294-5309.
34. Uitz J., Claustre H., Morel A., Hooker S.B. Vertical distribution of phytoplankton communities in open ocean: an assessment based on surface chlorophyll. J. Geophys. Res. 2006, 111:C08005.
35. Van Heukelem L., Thomas C.S. Computer-assisted high-performance liquid chromatography method development with applications to the isolation and analysis of phytoplankton pigments. J. Chromatogr. A 2001, 910:31-49.
36. Westberry T.K., Dall'Olmo G., Boss E., Behrenfeld M.J., Moutin T. Coherence of particulate beam attenuation and backscattering coefficients in diverse open ocean environments. Opt. Express. 2010, 18(15):15419-15425.