INVEX - A web-based tool for integrative visualization of expression data

Bioinformatics

Volumn 29, Issue 24, 2013, Pages 3232-3234

  Xia, Jianguo ^a   Lyle, Ngan H ^a   Mayer, Matthew L ^a   Pena, Olga M ^a   Hancock, Robert E W ^a,b   Brudno, Michael ^c  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^c NONE

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; HUMAN; INTERNET; METABOLOMICS; MOLECULAR GENETICS;

ANIMALS; COMPUTER GRAPHICS; GENE EXPRESSION PROFILING; HUMANS; INTERNET; METABOLOMICS; MOLECULAR SEQUENCE ANNOTATION; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 84900376656     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt562     Document Type: Article

References (11)

1. Gentleman, R.C. et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol., 5, R80.
2. Miller, C.A. et al. (2013) Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web. Bioinformatics, 29, 381-383.
3. Pavlidis, P. and Noble, W.S. (2003) Matrix2png: a utility for visualizing matrix data. Bioinformatics, 19, 295-296.
4. Pena, O.M. et al. (2011) Endotoxin tolerance represents a distinctive state of alternative polarization (M2) in human mononuclear cells. J. Immunol., 186, 7243-7254.
5. Perez-Llamas, C. and Lopez-Bigas, N. (2011) Gitools: analysis and visualisation of genomic data using interactive heat-maps. PLoS One, 6, e19541.
6. Reich, M. et al. (2006) GenePattern 2.0. Nat. Genet., 38, 500-501.
7. Saeed, A.I. et al. (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques, 34, 374-378.
8. Saldanha, A.J. (2004) Java Treeview-extensible visualization of microarray data. Bioinformatics, 20, 3246-3248.
9. Smyth, G.K. (2005) Limma: linear models for microarray data. In: Bioinformatics and Computational Biology Solutions Using R and Bioconductor, New York, Springer, pp. 397-420.
10. Tan, C.M. et al. (2013) Network2Canvas: network visualization on a canvas with enrichment analysis. Bioinformatics, 29, 1872-1878.
11. Xia, J. et al. (2013) INMEX-a web-based tool for integrative meta-analysis of expression data. Nucleic Acids Res., 41, W63-W70.