Practical fluorescence resonance energy transfer or molecular nanobioscopy of living cells

Handbook of Biological Confocal Microscopy: Third Edition

Volumn , Issue , 2006, Pages 788-808

  Majoul, Irina ^a   Jia, Yiwei ^b   Duden, Rainer ^a  

^a UNIVERSITY OF LONDON   (United Kingdom)

^b Olympus America Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84900271966     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-0-387-45524-2_45     Document Type: Chapter

References (95)

1. Bacia, K., Majoul, I. V., and Schwille, P., 2002, Probing the endocytic pathway in live cells using dual-color fluorescence cross-correlation analysis, Biophys. J. 83:1184-1193.
2. Bastiaens, P. I. H., and Jovin, T. M., 1998, Fluorescence resonance energy transfer (FRET) microscopy, In: Cell Biology: A Laboratory Handbook (J. E. Celis, ed.), Academic Press, New York, pp. 136-146.
3. Bastiaens, P. I. H., and Pepperkok, R., 2000, Observing proteins in their natural habitat: The living cell, Trends Biochem. Sci. 25:631-637.
4. Bastiaens, P. I., and Squire, A., 1999, Fluorescence lifetime imaging microscopy: Spatial resolution of biochemical processes in the cell, Trends Cell Biol. 9:48-52.
5. Bastiaens, P. I. H., Majoul, I. V., Verveer, P. J., Soling. H. D., and Jovin, T. M., 1996, Imaging the intracellular trafficking and state of the AB5 quaternary structure of cholera toxin, EMBO J. 15:4246-4253.
6. Bezzi, P., Gundersen, V., Galbete, J. L., Seifert, G., Steinhauser, C., Pilati, E., and Volterra, A., 2004, Astrocytes contain a vesicular compartment that is competent for regulated exocytosis of glutamate, Nat. Neurosci. 7:613-620.
7. Blackman, S. M., Piston, D. W., and Beth, A. H., 1998, Oligomeric state of human erythrocyte band 3 measured by fluorescence resonance energy homotransfer, Biophys. J. 75:1117-1130.
8. Blinks, J. R., Mattingly, P. H., Jewell, B. R., van Leeuwen, M., Harrer, G. C., and Allen, D. G., 1978, Practical aspects of the use of aequorin as a calcium indicator: Assay, preparation, microinjection, and interpretation of signals, Methods Enzymol. 57:292-328.
9. Bunt, G., and Wouters, F. S., 2004, Visualization of molecular activities inside living cells with fluorescent labels, Int. Rev. Cytol. 237:205-277.
10. Butkevich, E., Hulsmann, S., Wenzel, D., Shirao, T., Duden, R., and Majoul, I., 2004, Drebrin stabilizes connexin-43 and links gap junctions to the submembrane cytoskeleton, Curr. Biol. 14:650-658.
11. Campbell, R. E., Tour, R., Palmer, A. E., Steinbach, P. A., Baird, G. S., Zacharias, D. A., and Tsien, R. Y., 2002, A monomeric red fluorescent protein, Proc. Natl. Acad. Sci. USA 99:7877-7882.
12. Chalfie, M., 1995, Green fluorescent protein, Photochem. Photobiol. 62:651-656.
13. Chalfie, M., Tu, Y., Euskirchen, G., Ward, W. W., and Prasher, D. C., 1994, Green fluorescent protein as a marker for gene expression, Science 263:802-805.
14. Choi, S. R., Zhuang, Z. P., Chacko, A. M, Acton, P. D., Tjuvajer-Gelovani, J., Doubrovin, M., Chu, D. C., and Kung, H. F., 2005, SPECT imaging of herpes simplex virus Type1 thymidine kinase gene expression by [(123) I]FIAU (1). Acad. Radiol. 12:798-805.
15. Clegg, R. M., 1992, Fluorescence resonance energy transfer and nucleic acids, Methods Enzymol. 211:353-388.
16. Cohen-Cory, S., 2002, The developing synapse: Construction and modulation of synaptic structures and circuits, Science 298:770-776.
17. Cole, N. B., Smith, C. L., Sciaky, N., Terasaki, M., Edidin, M., and Lippincott-Schwartz, J., 1996, Diffusional mobility of Golgi proteins in membranes of living cells, Science 273:797-801.
18. Conn, P. M., ed., 1991, Electrophysiology and Microinjection, Academic Press, London.
19. Del Pozo, M. A., Kiosses, W. B., Alderson, N. B., Meller, N., Hahn, K. M., and Schwartz, M. A., 2002, Integrins regulate GTP-Rac localized effector interactions through dissociation of Rho-GDI, Nat. Cell Biol. 4:232-239.
20. Elsliger, M. A., Wachter, R. M., Hanson, G. T., Kallio, K., and Remington, S. J., 1999, Structural and spectral response of green fluorescent protein variants to changes in pH, Biochemistry 38:5296-5301.
21. Erickson, M. G., Moon, D. L., and Yue, D. T., 2003, DsRed as a potential FRET partner with CFP and GFP, Biophys. J. 85:599-611.
22. Förster, V. T., 1948a, Zwischenmolekulare Energiewanderung und Fluoreszenz, Ann. Phys. 6:54-75.
23. Förster, T. H., 1948b, Versuche zum zwischenmolekularen Ubergang von Elektronenanregungsenergie, Naturwissenschaften 33:93-100.
24. Galperin, E., Verkhusha, V. V., and Sorkin, A., 2004, Three-chromophore FRET microscopy to analyze multiprotein interactions in living cells, Nat. Methods 1:209-217.
25. Gerritsen, H. C., and de Grauw, K., 2001, One- and two-photon confocal fluorescence lifetime imaging and its applications, In: Methods in Cellular Imaging (A. Periasamy, ed.), Oxford University Press, New York, pp. 309-323.
26. Gordon, G. W., Berry, G., Liang, X. H., Levine, B., and Herman, B., 1998, Quantitative fluorescence resonance energy transfer measurements using fluorescence microscopy, Biophys. J. 74:2702-2713.
27. Griesbeck, O., Baird, G. S., Campbell, R. E., Zacharias, D. A., and Tsien, R. Y., 2001, Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications, J. Biol. Chem. 276:29188-29194.
28. Grutzendler, J., Tsai, J., and Gan, W. B., 2003, Rapid labeling of neuronal populations by ballistic delivery of fluorescent dyes, Methods 30:79-85.
29. Ha, T., Ting, A. Y., Liang, J., Caldwell, B., Deniz, A. A., Chemla, D. S., Schultz, P. G., and Weiss, S., 1999, Single molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism, Proc. Natl. Acad. Sci. USA 96:893-898.
30. Hahn, K., 2003, Monitoring signaling processes in living cells using biosensors, Sci. STKE 205: tr5. [DOI: 10.1126/stke.2003.205.tr5]
31. Heim, R., Cubitt, A. B., and Tsien, R. Y., 1995, Improved green fluorescence, Nature, 373(6516):663-664.
32. Heim, R., and Tsien, R. Y., 1996, Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer, Curr. Biol. 6:178-182.
33. Heim, R., Prasher, D. C., and Tsien, R. Y., 1994, Wavelength mutations and posttranslational autooxidation of green fluorescent protein, Proc. Natl. Acad. Sci. USA 91:12501-12504.
34. Hell, S. W., 2003, Toward fluorescence nanoscopy, Nat. Biotechnol. 21:1347-1355.
35. Herman, B., Gordon, G., Mahajan, N., and Centonze, V. E., 2001, Measurement of fluorescence resonance energy transfer in the optical microscope, In: Methods in Cellular Imaging, (A. Periasamy, ed.), Oxford University Press, New York, pp. 257-272.
36. Hirose, S. K., Kadowaki, M., Tanabe, H., Takeshima, and Iino, M., 1999, Spatiotemporal dynamics of inositol 1, 4, 5-triphosphate that underlines complex Ca2+ mobilization patterns, Science 248:1527-1530.
37. Hoppe, A., Christensen, K., and Swanson, J. A., 2002, Fluorescence resonance energy transfer-based stoichiometry in living cells, Biophys. J. 83:3652-3664.
38. Hurtley, S. M., and Helmuth, L., 2003, The future looks bright, Science 300:75.
39. Janetopoulos, C., Jin, T., and Devreotes, P., 2001, Receptor-mediated activation of heterotrimeric G-proteins in living cells, Science 291:2408-2411.
40. Jones, J. T., Myers, J. W., Ferrell, J. E., and Meyer, T., 2004, Probing the precision of the mitotic clock with a live-cell fluorescent biosensor, Nat. Biotech. 22:306-312.
41. Johnson, D. A., Voet, J. G., and Taylor, P., 1984, Fluorescence energy transfer between cobra a-toxin molecules bound to the acetylcholine receptor, J. Biol. Chem. 259:5717-5725.
42. Kohen, E., Legallais, V., and Kohen, C., 1966, An introduction to microelectrophoresis and microinjection techniques in microfluorimetry, Exp. Cell Res. 41:223-226.
43. Kenworthy, A. K., and Edidin, M., 1998, Distribution of a glycosyl phosphatidyl inositol-anchored protein at the apical surface of MDCK cells examined at a resolution of <100Å using imaging fluorescence resonance energy transfer, J. Cell Biol. 142:69-84.
44. Kim, S. A., and Schwille, P., 2003, Intracellular applications of fluorescence correlation spectroscopy: prospects for neuroscience, Curr. Opin. Neurobiol. 13:583-590.
45. Kraynov, V. S., Chamberlain, C., Bokoch, G. M., Schwartz, M. A., Slabaugh, S., and Hahn, K. M., 2000, Localized Rac activation dynamics visualized in living cells, Science 290:333-337.
46. Kusumi, A., Ike, H., Nakada, C., Murase, K., and Fujiwara, T., 2005, Singlemolecule tracking of membrane molecules: Plasma membrane compartmentalization and dynamic assembly of raft-philic signaling molecules, Semin. Immunol. 17:3-21.
47. Labas, Y. A., Gurskaya, N. G., Yanushevich, Y. G., Fradkov, A. F., Lukyanov, K. A., Lukyanov, S. A., and Matz, M. V., 2002, Diversity and evolution of the green fluorescent protein family, Proc. Natl. Acad. Sci. USA 99:4256-4261.
48. Lakowicz, J. R., 1999, Principles of Fluorescence Spectroscopy, 2nd ed., Kluwer Academic/Plenum Publishers, New York, pp. 367-394.
49. Larson, D. R., Ma, Y. M., Vogt, V. M., and Webb, W. W., 2004, Direct measurement of Gag-Gag interaction retrovirus assembly with FRET and fluorescence correlation spectroscopy, J. Cell Biol. 162:1233-1244.
50. Lippincott-Schwartz, J., and Patterson, G. H., 2003, Development and use of fluorescent protein markers in living cells, Science 300:87-91.
51. Lippincott-Schwartz, J., Altan-Bonnet, N., and Patterson, G. H., 2003, Photobleaching and photoactivation: following protein dynamics in living cells, Nat. Cell Biol. (Suppl.): S7-S14.
52. Lippincott-Schwartz, J., Snapp, E., and Kenworthy, A., 2001, Studying protein dynamics in living cells, Nat. Rev. Mol. Cell Biol. 2:444-456.
53. Lidke, D. S., Nagy, P., Heintzmann, R., Arndt-Jovin, D. J., Post, J. N., Grecco, H., Jares-Erijman, E. A., and Jovin, T. M., 2004, Quantum dot ligands provide new insights into erbB/HER receptor-mediated signal transduction, Nat. Biotechnol. 22:198-203.
54. Magde, D., Elson, E., and Webb, W. W., 1972, Thermodynamic fluctuations in a reacting system. Measurement by fluorescence correlation spectroscopy, Phys. Rev Lett. 29:705-708.
55. Majoul, I., Schmidt, T., Pomasanova, M., Boutkevich, E., Kozlov, Y., and Söling, H. D., 2002a, Differential expression of receptors for Shiga and Cholera toxin is regulated by the cell cycle, J. Cell Sci. 115:817-826.
56. Majoul, I., Sohn, K., Wieland, F. T., Pepperkok, R., Pizza, M., Hillemann, J., and Söling, H. D., 1998, KDEL receptor (Erd2p)-mediated retrograde transport of the cholera toxin A subunit from the Golgi involves COPI, p23, and the COOH terminus of Erd2p, J. Cell Biol. 143:601-612.
57. Majoul, I., Straub, M., Hell, S. W., Duden, R., and Söling, H. D., 2001, KDEL-cargo regulates interactions between proteins involved in COPI vesicle traffic: Measurements in living cells using FRET, Dev. Cell 1:139-153.
58. Majoul, I., Straub, M., Duden, R., Hell, S. W., and Söling, H. D., 2002b, Fluorescence resonance energy transfer analysis of protein-protein interactions in single living cells by multifocal multiphoton microscopy, J. Biotechnol. 82:267-277.
59. Majoul, I. V., Bastiaens, P. I., and Söling, H. D., 1996, Transport of an external Lys-Asp-Glu-Leu (KDEL) protein from the plasma membrane to the endoplasmic reticulum: Studies with cholera toxin in Vero cells, J. Cell Biol. 133:777-789.
60. Mattheyses, A. L., Hoppe, A. D., and Axelrod, D., 2004, Polarized fluorescence resonance energy transfer microscopy, Biophy. J. 87:2787-2797.
61. Matz, M. V., Fradkov, A. F., Labas, Y. A., Savitsky, A. P., Markelov, M. L., and Lukyanov, S. A., 1999, Fluorescent proteins from nonbioluminescent Anthozoa species, Nat. Biotechnol. 17:969-973.
62. Meyer, T., and Teruel, M. N., 2003, Fluorescence imaging of signaling networks, Trends Cell Biol. 13:101-106.
63. Michalet, X., Pinaud, F. F., Bentolila, L. A., Tsay, J. M., Doose, S., Li, J. J., Sundaresan, G., Wu, A. M., Gambhir, S. S., and Weiss, S., 2005, Quantum dots for live cells, in vivo imaging, and diagnostics, Science 307:538-544.
64. Miesenbock, G., De Angelis, D. A., and Rothman, J. E., 1998, Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins, Nature 394:192-195.
65. 2+ measurements using improved chameleons, Proc. Natl. Acad. Sci. USA 96:2135-2140.
66. 2+ based on green fluorescent proteins and calmodulin, Nature 388:882-887.
67. Mochizuki, N., Yamashita, S., Kurokawa, K., Ohba, Y., Nagai, T., Miyawaki, A., and Matsuda, M., 2001, Spatio-temporal images of growth-factorinduced activation of Ras and Rap1, Nature 411:1065-1068.
68. Nicholl, C., 2004, Leonardo da Vinci - The flights of the mind, Allen Lane, Penguin Books Ltd., London.
69. Patterson, G., Day, R., and Piston, D., 2001, Fluorescent protein spectra, J. Cell Sci. 114:837-838.
70. Patterson, G. H., Knobel, S. M., Sharif, W. D., Kain, S. R., and Piston, D. W., 1997, Use of the green fluorescent protein and its mutants in quantitative fluorescence microscopy, Biophys. J. 73:2782-2790.
71. Patterson, G. H., Piston, D. W., and Barisas, B. G., 2000, Forster distances between green fluorescent protein pairs, Anal. Biochem. 284:438-440.
72. Periasamy, A., Elangovan, M., Wallrabe, H., Demas, J. N., Barroso, M., Brautigan, D. L., and Day, R. N., 2001, Widefield, confocal, two-photon and lifetime resonance energy transfer imaging microscopy, In: Methods in Cellular Imaging, (A. Periasamy, ed.), Oxford University Press, New York, pp. 295-308.
73. Prasher, D. C., Eckenrode, V. K., Ward, W. W., Prendergast, F. G., and Cormier, M. J., 1992, Primary structure of the Aequorea victoria green-fluorescent protein, Gene 111:229-233.
74. Presley, J. F., Ward, T. H., Pfeifer, A. C., Siggia, E. D, Phair, R. D., and Lippincott-Schwartz, J., 2002, Dissection of COPI and Arf1 dynamics in vivo and role in Golgi membrane transport, Nature 417:187-193.
75. Sambrook, J., Fritsch, E. F., and Maniatis, T., 1989, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
76. Sato, M., Ozawa, T., Inukai, K., Asano, T., and Umezawa, Y., 2002, Fluorescent indicators for imaging protein phosphorylation in single living cells, Nat. Biotechnol. 20:287-294.
77. Sato, M., Ueda, Y., Takagi, T., and Umezawa, Y., 2003, Production of PtdInsP3 at endomembranes is triggered by receptor endocytosis, Nat. Cell Biol. 5:1016-1022.
78. Shaner, N. C., Campbell, R. E., Steinbach, P. A., Giepmans, B. N., Palmer, A. E., and Tsien, R. Y., 2004, Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein, Nat. Biotechnol. 22:1567-1572.
79. Stephens, D. J., and Allan, V. J., 2003, Light microscopy techniques for live cell imaging, Science 300:82-86.
80. Stryer, L., 1978, Fluorescence energy transfer as a spectroscopic ruler, Annu. Rev. Biochem. 47:819-846.
81. Stryer, L., and Haugland, R. P., 1967, Energy transfer: A spectroscopic ruler, Proc. Natl. Acad. Sci. USA 58:719-726.
82. Ting, A. Y., Kain, K. H., Klemke, R. L., and Tsien, R. Y., 2001, Genetically encoded fluorescent reporters of protein tyrosine kinase activities in living cells, Proc. Natl. Acad. Sci. USA 98:15003-15008.
83. Tron, L., Szollosi, J., Damjanovich, S., Helliwell, S. H., Arndt-Jovin, D. J., and Jovin, T. M., 1984, Flow cytometric measurement of fluorescence resonance energy transfer on cell surfaces. Quantitative evaluation of the transfer efficiency on a cell-by-cell basis, Biophys. J. 45:939-946.
84. Tsien, R. Y., 1998, The green fluorescent protein, Annu. Rev. Biochem. 67:509-544.
85. Tsien, R. Y., 2004, Building and breeding molecules to spy on cells and tumors, FEBS Lett. 579:927-932.
86. Umezawa, Y., 2005, Genetically encoded optical probes for imaging cellular signalling pathways, Biosens. Bioelectron. 20:2504-2511.
87. Velez, M., and Axelrod, D., 1988, Polarized fluorescence photobleaching recovery for measuring rotational diffusion in solutions and membranes, Biophys J. 53:575-591.
88. Violin, J. D., Zhang, J., Tsien, R. Y., and Newton, A. C., 2003, A genetically encoded fluorescent reporter reveals oscillatory phosphorylation by protein kinase C, J. Cell Biol. 161:899-909.
89. Wakayama, S., Cibelli, J. B., and Wakayama, T., 2003, Effect of timing of the removal of oocyte chromosomes before or after injection of somatic nucleus on development of NT embryos, Cloning Stem Cells 5:181-189.
90. Ward, W. W., Prentice, H. J., Roth, A. F., Cody, C. W., and Reeves, S. C., 1982, Spectral perturbations of the Aequorea green fluorescent protein, Photochem. Photobiol. 35:803-808.
91. Weijer, C. J., 2003, Visualizing signals moving in cells, Science 300:96-100.
92. Wouters, F. S., Verveer, P. J., and Bastiaens, P. I., 2001, Imaging biochemistry inside cells, Trends Cell Biol. 11:203-211.
93. Wu, X., 2003, Multicolor labeling of cells using QdotTM streptavidin conjugates, Quantum Dot Vision 1:10-11.
94. Zal, T., and Gascoigne, N. R. J., 2004, Photobleaching-corrected FRET efficiency imaging of live cells, Biophys. J. 86:3923-3939.
95. Zhang, J., Ma, Y., Taylor, S. S., and Tsien, R. Y., 2001, Genetically encoded reporters of protein kinase A activity reveal impact of substrate tethering, Proc. Natl. Acad. Sci. USA 98:14997-15002.