Variations in the structure of airborne bacterial communities in a downwind area during an Asian dust (Kosa) event

Science of the Total Environment

Volumn 488-489, Issue 1, 2014, Pages 75-84

  Maki, Teruya ^a   Puspitasari, Findya ^a   Hara, Kazutaka ^a   Yamada, Maromu ^b   Kobayashi, Fumihisa ^a   Hasegawa, Hiroshi ^a   Iwasaka, Yasunobu ^c  

^a KANAZAWA UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF OCCUPATIONAL SAFETY AND HEALTH   (Japan)

^c UNIVERSITY OF SHIGA PREFECTURE   (Japan)

Author keywords

Airborne; Asian dust; Bioaerosol

Indexed keywords

BACTERIOLOGY; CLONING; DNA SEQUENCES; DUST;

AIRBORNE; AIRBORNE MICROORGANISMS; ASIAN DUST; BIOAEROSOLS; BIOLOGICAL ECOSYSTEM; PARTICLE CONCENTRATIONS; PHYLOGENETIC ANALYSIS; SPECIES COMPOSITION;

BACTERIA;

DNA 16S; MINERAL;

AEROSOL COMPOSITION; AEROSOL FORMATION; AIR QUALITY; AIR SAMPLING; BACTERIUM; DUST; ENVIRONMENTAL RISK; HEALTH IMPACT; HEALTH RISK; PARTICULATE MATTER; POPULATION DYNAMICS;

AIR SAMPLING; AIRBORNE BACTERIUM; ALPHAPROTEOBACTERIA; ARTICLE; ASIAN DUST EVENT; ATMOSPHERE; BACILLUS MEGATERIUM; BACILLUS PUMILUS; BACILLUS SUBTILIS; BACTERIAL COUNT; BACTERIUM IDENTIFICATION; BUILDING; CHINA; CLADISTICS; COMMUNITY STRUCTURE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; CYANOBACTERIUM; DESERT; DNA SEQUENCE; FIRMICUTES; GENE CLUSTER; GENE SEQUENCE; JAPAN; METEOROLOGICAL PHENOMENA; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLLUTION TRANSPORT; PRIORITY JOURNAL; SEA; SPECIES COMPOSITION; SPHINGOMONAS; SYNECHOCOCCUS; UNINDEXED SEQUENCE;

CHUBU; HONSHU; ISHIKAWA; JAPAN; KANAZAWA;

AIRBORNE; ASIAN DUST; BIOAEROSOL;

AIR MICROBIOLOGY; AIR POLLUTANTS; ATMOSPHERE; DUST; ENVIRONMENTAL MONITORING; JAPAN; MICROBIAL CONSORTIA; PHYLOGENY;

EID: 84899915460     PISSN: 00489697     EISSN: 18791026     Source Type: Journal    
DOI: 10.1016/j.scitotenv.2014.04.044     Document Type: Article

References (54)

1. Amato P., Parazols M., Sancelme M., Mailhot G., Laj P., Delort A.M. An important oceanic source of micro-organisms for cloud water at the Puy de DÔme (France). Atmos Environ 2007, 41:8253-8263.
2. Ammendolia M.G., Bertuccini L., Minelli F., Meschini S., Baldassarri L. A Sphingomonas bacterium interacting with epithelial cells. Res Microbiol 2004, 155:636-646.
3. Baraniecki C.A., Aislabie J., Foght J.M. Characterization of Sphingomonas sp. Ant 17, an aromatic hydrocarbon-degrading bacterium isolated from Antarctic soil. Microb Ecol 2002, 43:44-54.
4. Brown J.K.M., Hovmøller M.S. Aerial dispersal of pathogens on the global and continental scales and its impact on plant disease. Science 2002, 297:537-541.
5. Choi D.H., Noh J.H. Phylogenetic diversity of Synechococcus strains isolated from the East China Sea and the East Sea. FEMS Microbiol Ecol 2009, 69:439-448.
6. Creamean J.M., Suski K.J., Rosenfeld D., Cazorla A., DeMott P.J., Sullivan R.C., et al. Dust and biological aerosols from the Sahara and Asia influence precipitation in the Western U.S. Science 2013, 339:1572-1578.
7. Das K., Mukherjee A.K. Crude petroleum-oil biodegradation efficiency of Bacillus subtilis and Pseudomonas aeruginosa strains isolated from a petroleum-oil contaminated soil from North-East India. Bioresour Technol 2007, 98:1339-1345.
8. Dieser M., Greenwood M., Foreman C.M. Carotenoid pigmentation in antarctic heterotrophic bacteria as a strategy to withstand environmental stresses. Arct Antarct Alp Res 2010, 42:396-405.
9. Duce R.A., Unni C.K., Ray B.J., Prospero J.M., Merrill J.T. Long-range atmospheric transport of soil dust from Asia to the tropical North Pacific: temporal variability. Science 1980, 209:1522-1524.
10. Eguchi M., Nishikawa T., McDonald K., Cavicchioli R., Gottschal J.C., Kjelleberg S. Response to stress and nutrient availability by the marine ultramicrobacterium Sphingomonas sp. strain RB2256. Appl Environ Microbiol 1996, 62:1287-1294.
11. Fuller N.J., Marie D., Partensky F., Vaulot D., Post A.F., Scanlan D.J. Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea. Appl Environ Microbiol 2003, 69:2430-2443.
12. Giovannoni S.J., Stingl U. Molecular diversity and ecology of microbial plankton. Nature 2005, 437:343-348.
13. Gloeckner F.O., Zaichikov E., Belkova N., Denissova L., Pernthaler J., Pernthaler A., et al. Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Appl Environ Microbiol 2000, 66:5053-5065.
14. Good I.J. The population frequencies of species and the estimation of population parameters. Biometrika 1953, 40:237-264.
15. Hara K., Zhang D. Bacterial abundance and viability in long-range transported dust. Atmos Environ 2012, 47:20-25.
16. Hou C.T., Labeda D.P., Rooney A.P. Evaluation of microbial strains for linoleic acid hydroxylation and reclassification of strain ALA2. Antonie Van Leeuwenhoek 2005, 88:167-171.
17. Hua N.P., Kobayashi F., Iwasaka Y., Shi G.Y., Naganuma T. Detailed identification of desert-originated bacteria carried by Asian dust storms to Japan. Aerobiologia 2007, 23:291-298.
18. Ichinose T., Nishikawa M., Takano H., Sera N., Sadakane K., Mori I., et al. Pulmonary toxicity induced by intratracheal instillation of Asian yellow dust (Kosa) in mice. Regul Toxicol Pharmacol 2005, 20:48-56.
19. Iwasaka Y., Minoura H., Nagaya K. The transport and special scale of Asian dust-storm clouds: a case study of the dust-storm event of April 1979. Tellus 1983, 35B:189-196.
20. Jaenicke R. Abundance of cellular material and proteins in the atmosphere. Science 2005, 308:73.
21. Jeon E.M., Kim H.J., Jung K., Kim J.H., Kim M.Y., Kim Y.P., et al. Impact of Asian dust events on airborne bacterial community assessed by molecular analyses. Atmos Environ 2011, 45:4313-4321.
22. Jones A.M., Harrison R.M. The effects of meteorological factors on atmospheric bioaerosol concentrations - a review. Sci Total Environ 2004, 326:151-180.
23. Kakikawa M., Kobayashi F., Maki T., Yamada M., Higashi T., Chen B., et al. Dustborne microorganisms in the atmosphere over Asian dust (KOSA) source region, Dunhuang. Air Qual Atmos Health 2009, 1:195-202.
24. Kilic A., Senses Z., Kurekci E., Aydogan H., Sener K., Kismet E., et al. Nosocomial outbreak of Sphingomonas paucimobilis bacteremia in a hemato/oncology unit. Jpn J Infect Dis 2007, 60:394-396.
25. Latifi A., Ruiz M., Zhang C.C. Oxidative stress in cyanobacteria. FEMS Microbiol Rev 2009, 33:258-278.
26. Li K., Dong S., Wu Y., Yao M. Comparison of the biological content of air samples collected at ground level and at higher elevation. Aerobiologia 2010, 26:233-244.
27. Maidak B.L., Olsen G.J., Larsen N., Overbeek R., McCaughey M.J., Woese C. The RDP (ribosomal database project). Nucleic Acids Res 1997, 25:109-110.
28. Maki T., Susuki S., Kobayashi F., Kakikawa M., Yamada M., Higashi T., et al. Phylogenetic diversity and vertical distribution of a halobacterial community in the atmosphere of an Asian dust (KOSA) source region, Dunhuang City. Air Qual Atmos Health 2008, 1:81-89.
29. Maki T., Susuki S., Kobayashi F., Kakikawa M., Tobo Y., Yamada M., et al. Phylogenetic analysis of atmospheric halotolerant bacterial communities at high altitude in an Asian dust (KOSA) arrival region, Suzu City. Sci Total Environ 2010, 408:4556-4562.
30. Maki T., Aoki S., Susuki S., Kobayashi F., Kakikawa M., Hasegawa H., et al. Characterization of halotolerant and oligotrophic bacterial communities in Asian desert dust (KOSA) bioaerosol accumulated in layers of snow on Mount Tateyama, Central Japan. Aerobiologia 2011, 27:277-290.
31. Maki T., Kakikawa M., Kobayashi F., Yamada M., Matsuki A., Hasegawa H., et al. Assessment of composition and origin of airborne bacteria in the free troposphere over Japan. Atmos Environ 2013, 74:73-82.
32. Miteva V.I., Sheridan P.P., Brenchley J.E. Phylogenetic and physiological diversity of microorganisms isolated from a deep Greenland glacier ice core. Appl Environ Microbiol 2004, 70:202-213.
33. Morris R.M., Rappé M.S., Connon S.A., Vergin K.L., Siebold W.A., Carlson C.A., et al. SAR11 clade dominates ocean surface bacterioplankton communities. Nature 2002, 420:806-810.
34. Morris R.M., Vergin K.L., Cho J.C., Rappé M.S., Carlson C.A., Giovannoni S.J. Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic time-series study site. Limnol Oceanol 2005, 50:1687-1696.
35. Mostajir B., Dolan J.R., Rassoulzadegan F. A simple method for the quantification of a class of labile marine pico- and nano-sized detritus: DAPI yellow particles (DYP). Aquat Microb Ecol 1995, 9:259-266.
36. Nicholson W.L., Munakata N., Horneck G., Melosh H.J., Setlow P. Resistance of Bacillus endospores to extreme terrestrial and extraterrestrial environments. Microbiol Mol Biol Rev 2000, 64:548-572.
37. Ostrowski M., Caviccioli R., Blaauw M., Gottschal J.C. Specific growth rate plays a critical role in hydrogen peroxide resistance of the marine oligotrophic ultramicrobacterium Sphingomonas alaskensis strain RB2256. Appl Environ Microbiol 2001, 67:1292-1299.
38. 2 detoxification with different physiological roles. J Bacteriol 2003, 185:3654-3660.
39. Polymenakou P.N., Mandalakis M., Stephanou E.G., Tselepides A. Particle size distribution of airborne microorganisms and pathogens during an intense African dust event in the Eastern Mediterranean. Environ Health Perspect 2008, 116:292-296.
40. Porter K.G., Feig Y.S. The use of DAPI for identifying and counting aquatic microflora. Limnol Oceano 1980, 25:943-948.
41. Pratt K.A., DeMott P.J., French J.R., Wang Z., Westphal D.L., Heymsfield A.J., et al. In situ detection of biological particles in cloud ice-crystals. Nat Geosci 2009, 2:398-401.
42. Prospero J.M., Blades E., Mathison G., Naidu R. Interhemispheric transport of viable fungi and bacteria from Africa to the Caribbean with soil dust. Aerobiologia 2005, 21:1-19.
43. Rodó X., Ballester J., Cayan D., Melish M.E., Nakamura Y., Uehara R., et al. Association of Kawasaki disease with tropospheric wind patterns. Sci Rep 2011, 1:152. 10.1038/srep00152.
44. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
45. Smith D.J., Jaffe D.A., Birmele M.N., Griffin D.W., Schuerger A.C., Hee J., et al. Free tropospheric transport of microorganisms from Asia to North America. Microb Ecol 2012, 64:973-985.
46. Song J., Oh H.M., Cho J.C. Improved culturability of SAR11 strains in dilution to extinction culturing from the East Sea, West Pacific Ocean. FEMS Microbiol Lett 2009, 295:141-147.
47. Stewart I., Falconer I.R. Cyanobacteria and cyanobacterial toxins. Oceans and human health: risks and remedies from the seas 2008, 271-296. Academic Press, Burlington, MA. P.J. Walsh, S.L. Smith, L.E. Fleming (Eds.).
48. Stewart S.L., Grinshpun S.A., Willeke K., Stolz A. Molecular characteristics of xenobiotic-degrading sphingomonads. Appl Microbiol Biotechnol 2009, 81:793-811.
49. Thomas M., Whitte H. Atypical meningitis complicating a penetrating head injury. J Neurol Neurosurg Psychiatry 1991, 54:92-93.
50. Ulrich A., Klimke G., Wirth S. Diversity and activity of cellulose-decomposing bacteria, isolated from a sandy and a loamy soil after long-term manure application. Microb Ecol 2008, 55:512-522.
51. Yadav S., Kaushik R., Saxena A.K., Arora D.K. Diversity and phylogeny of plant growth-promoting bacilli from moderately acidic soil. J Basic Microbiol 2011, 51:98-106.
52. Yamaguchi N., Ichijo T., Sakotani A., Baba T., Nasu M. Global dispersion of bacterial cells on Asian dust. Sci Res 2012, 2:525. 10.1038/srep00525.
53. Yoshida S., Hiradate S., Tsukamoto T., Hatakeda K., Shirata A. Antimicrobial activity of culture filtrate of Bacillus amyloliquefaciens RC-2 isolated from mulberry leaves. Phytopathology 2001, 91:181-187.
54. Zhang D., Iwasaka Y., Matsuki A., Ueno K., Matsuzaki T. Coarse and accumulation mode particles associated with Asian dust in southwestern Japan. Atmos Environ 2006, 40:1205-1215.