Characterization of a homolog of DEAD-box RNA helicases in Toxoplasma gondii as a marker of cytoplasmic mRNP stress granules

Gene

Volumn 543, Issue 1, 2014, Pages 34-44

  Cherry, Ahmed Adnan ^a   Ananvoranich, Sirinart ^a  

^a UNIVERSITY OF WINDSOR   (Canada)

Author keywords

DEAD box RNA helicase; Environmental responses; Stress granules; Toxoplasma

Indexed keywords

DEAD BOX PROTEIN; MESSENGER RNA; TOXOPLASMA GONDII HOMOLOG OF DOZI; UNCLASSIFIED DRUG;

ARTICLE; BIOCHEMISTRY; CELL STRESS; CELL VIABILITY; CONTROLLED STUDY; CYTOPLASM; EUKARYOTE; GENE CONTROL; HOST PARASITE INTERACTION; HUMAN; HUMAN CELL; LIFE CYCLE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; STRUCTURAL HOMOLOGY; TOXOPLASMA GONDII; YEAST;

EUKARYOTA; PLASMODIUM (APICOMPLEXA); PROTOZOA; TOXOPLASMA; TOXOPLASMA GONDII;

DEAD-BOX RNA HELICASE; ENVIRONMENTAL RESPONSES; STRESS GRANULES; TOXOPLASMA;

AMINO ACID SEQUENCE; BIOLOGICAL MARKERS; CELLS, CULTURED; CLONING, MOLECULAR; CYTOPLASMIC GRANULES; DEAD-BOX RNA HELICASES; HUMANS; MOLECULAR SEQUENCE DATA; RIBONUCLEOPROTEINS; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; STRESS, PHYSIOLOGICAL; TOXOPLASMA;

EID: 84899658845     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2014.04.011     Document Type: Article

References (30)

1. Black M.W., Boothroyd J.C. Lytic cycle of Toxoplasma gondii. Microbiology and Molecular Biology Reviews 2000, 64:607-623.
2. Bleichert F., Baserga S.J. The long unwinding road of RNA helicases. Molecular Cell 2007, 27:339-352.
3. Braun L., Cannella D., Ortet P., Barakat M., Sautel C.F., Kieffer S., Garin J., Bastien O., Voinnet O., Hakimi M.A. A complex small RNA repertoire is generated by a plant/fungal-like machinery and effected by a metazoan-like Argonaute in the single-cell human parasite Toxoplasma gondii. PLoS Pathogens 2010, 6:e1000920.
4. Carroll J.S., Munchel S.E., Weis K. The DExD/H box ATPase Dhh1 functions in translational repression, mRNA decay, and processing body dynamics. The Journal of Cell Biology 2011, 194:527-537.
5. Cordin O., Banroques J., Tanner N.K., Linder P. The DEAD-box protein family of RNA helicases. Gene 2006, 367:17-37.
6. Dubey J.P., Lindsay D.S., Speer C.A. Structures of Toxoplasma gondii tachyzoites, bradyzoites, and sporozoites and biology and development of tissue cysts. Clinical Microbiology Reviews 1998, 11:267-299.
7. Erickson S.L., Lykke-Andersen J. Cytoplasmic mRNP granules at a glance. Journal of Cell Science 2011, 124:293-297.
8. Gajria B., Bahl A., Brestelli J., Dommer J., Fischer S., Gao X., Heiges M., Iodice J., Kissinger J.C., Mackey A.J., Pinney D.F., Roos D.S., Stoeckert C.J., Wang H., Brunk B.P. ToxoDB: an integrated Toxoplasma gondii database resource. Nucleic Acids Research 2008, 36:D553-D556.
9. Gastens M.H., Fischer H.G. Toxoplasma gondii eukaryotic translation initiation factor 4A associated with tachyzoite virulence is down-regulated in the bradyzoite stage. International Journal for Parasitology 2002, 32:1225-1234.
10. Gietz R.D., Schiestl R.H. Quick and easy yeast transformation using the LiAc/SS carrier DNA/PEG method. Nature Protocols 2007, 2:35-37.
11. Gorbalenya A.E., Koonin E.V., Donchenko A.P., Blinov V.M. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Research 1989, 17:4713-4730.
12. Hafidh S., Capková V., Honys D. Safe keeping the message: mRNP complexes tweaking after transcription. Advances in Experimental Medicine and Biology 2011, 22:118-136.
13. Hooper C., Hilliker A. Packing them up and dusting them off: RNA helicases and mRNA storage. Biochimica et Biophysica Acta 2013, 1829:824-834.
14. Huynh M.H., Carruthers V.B. Tagging of endogenous genes in a Toxoplasma gondii strain lacking Ku80. Eukaryotic Cell 2009, 8:530-539.
15. Kim K., Weiss L.M. Toxoplasma gondii: the model apicomplexan. International Journal for Parasitology 2004, 34:423-432.
16. Linder P., Jankowsky E. From unwinding to clamping - the DEAD box RNA helicase family. Nature Reviews. Molecular Cell Biology 2011, 12:505-516.
17. Lirussi D., Matrajt M. RNA granules present only in extracellular Toxoplasma gondii increase parasite viability. International Journal of Biological Sciences 2011, 7:960-967.
18. López-Lastra M., Rivas A., Barría M.I. Protein synthesis in eukaryotes: the growing biological relevance of cap-independent translation initiation. Biological Research 2005, 38:121-146.
19. Mair G.R., Braks J.A., Garver L.S., Wiegant J.C., Hall N., Dirks R.W., Khan S.M., Dimopoulos G., Janse C.J., Waters A.P. Regulation of sexual development of Plasmodium by translational repression. Science 2006, 313:667-669.
20. Mollet S., Cougot N., Wilczynska A., Dautry F., Kress M., Bertrand E., Weil D. Translationally repressed mRNA transiently cycles through stress granules during stress. Molecular Biology of the Cell 2008, 19:4469-4479.
21. Musiyenko A., Majumdar T., Andrews J., Adams B., Barik S. PRMT1 methylates the single Argonaute of Toxoplasma gondii and is important for the recruitment of Tudor nuclease for target RNA cleavage by antisense guide RNA. Cellular Microbiology 2012, 14:882-901.
22. Rocak S., Linder P. DEAD-box proteins: the driving forces behind RNA metabolism. Nature Reviews. Molecular Cell Biology 2004, 5:232-241.
23. Russell R., Jarmoskaite I., Lambowitz A.M. Toward a molecular understanding of RNA remodeling by DEAD-box proteins. RNA Biology 2013, 10:44-55.
24. Scheller N., Resa-Infante P., de la Luna S., Galao R.P., Albrecht M., Kaestner L., Lipp P., Lengauer T., Meyerhans A., Díez J. Identification of PatL1, a human homolog to yeast P body component Pat1. Biochimica et Biophysica Acta 2007, 1773:1786-1792.
25. Sievers F., Wilm A., Dineen D., Gibson T.J., Karplus K., Li W., Lopez R., McWilliam H., Remmert M., Söding J., Thompson J.D., Higgins D.G. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology 2011, 7:539.
26. Stoecklin G., Kedersha N. Relationship of GW/P-bodies with stress granules. Advances in Experimental Medicine and Biology 2013, 768:197-211.
27. Tanner N.K., Cordin O., Banroques J., Doère M., Linder P. The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis. Molecular Cell 2003, 11:127-138.
28. Tseng-Rogenski S.S., Chong J.L., Thomas C.B., Enomoto S., Berman J., Chang T.H. Functional conservation of Dhh1p, a cytoplasmic DExD/H-box protein present in large complexes. Nucleic Acids Research 2003, 31:4995-5002.
29. Yang S., Parmley S.F. Toxoplasma gondii expresses two distinct lactate dehydrogenase homologous genes during its life cycle in intermediate hosts. Gene 1997, 184:1-12.
30. Zhang M., Joyce B.R., Sullivan W.J., Nussenzweig V. Translational control in Plasmodium and Toxoplasma parasites. Eukaryotic Cell 2013, 12:161-167.