메뉴 건너뛰기




Volumn 78, Issue 3, 2014, Pages 398-410

Root and shoot transcriptome analysis of two ecotypes of Noccaea caerulescens uncovers the role of NcNramp1 in Cd hyperaccumulation

Author keywords

cadmium; Cd hyperaccumulation; Cd transport; hyperaccumulation; Noccaea caerulescens; Nramp

Indexed keywords

CADMIUM; CELL MEMBRANES; GENE EXPRESSION; ZINC;

EID: 84899641045     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.12480     Document Type: Article
Times cited : (107)

References (43)
  • 1
    • 0035131986 scopus 로고    scopus 로고
    • Elevated expression of metal transporter genes in three accessions of the metal hyperaccumulator Thlaspi caerulescens
    • Assunção, A.G.L., Martins, P.D., De Folter, S., Vooijs, R., Schat, H., and, Aarts, M.G., (2001) Elevated expression of metal transporter genes in three accessions of the metal hyperaccumulator Thlaspi caerulescens. Plant Cell Environ. 24, 217-226.
    • (2001) Plant Cell Environ. , vol.24 , pp. 217-226
    • Assunção, A.G.L.1    Martins, P.D.2    De Folter, S.3    Vooijs, R.4    Schat, H.5    Aarts, M.G.6
  • 2
    • 0027435506 scopus 로고
    • In planta Agrobacterium-mediated gene transfer by infiltration of adult Arabidopsis thaliana plants
    • Bechtold, N., Ellis, J., and, Pelletier, G., (1993) In planta Agrobacterium-mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. C. R. Acad. Sci. III, Sci. Vie, 316, 1194-1199.
    • (1993) C. R. Acad. Sci. III, Sci. Vie , vol.316 , pp. 1194-1199
    • Bechtold, N.1    Ellis, J.2    Pelletier, G.3
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and, Hochberg, Y., (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B, 57, 289-300.
    • (1995) J. R. Stat. Soc. Series B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 77953199770 scopus 로고    scopus 로고
    • High-affinity manganese uptake by the metal transporter NRAMP1 is essential for Arabidopsis growth in low manganese conditions
    • Cailliatte, R., Schikora, A., Briat, J.F., Mari, S., and, Curie, C., (2010) High-affinity manganese uptake by the metal transporter NRAMP1 is essential for Arabidopsis growth in low manganese conditions. Plant Cell, 22, 904-917.
    • (2010) Plant Cell , vol.22 , pp. 904-917
    • Cailliatte, R.1    Schikora, A.2    Briat, J.F.3    Mari, S.4    Curie, C.5
  • 7
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough, S.J., and, Bent, A.F., (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
    • (1998) Plant J. , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 8
    • 1342287293 scopus 로고    scopus 로고
    • Hyperaccumulation of cadmium and zinc in Thlaspi caerulescens and Arabidopsis halleri at the leaf cellular level
    • Cosio, C., Martinoia, E., and, Keller, C., (2004) Hyperaccumulation of cadmium and zinc in Thlaspi caerulescens and Arabidopsis halleri at the leaf cellular level. Plant Physiol. 134, 716-725.
    • (2004) Plant Physiol. , vol.134 , pp. 716-725
    • Cosio, C.1    Martinoia, E.2    Keller, C.3
  • 9
    • 14544302853 scopus 로고    scopus 로고
    • Distribution of cadmium in leaves of Thlaspi caerulescens
    • Cosio, C., DeSantis, L., Frey, B., Diallo, S., and, Keller, C., (2005) Distribution of cadmium in leaves of Thlaspi caerulescens. J. Exp. Bot. 56, 765-775.
    • (2005) J. Exp. Bot. , vol.56 , pp. 765-775
    • Cosio, C.1    Desantis, L.2    Frey, B.3    Diallo, S.4    Keller, C.5
  • 10
    • 34250612252 scopus 로고    scopus 로고
    • A major quantitative trait locus for cadmium tolerance in Arabidopsis halleri colocalizes with HMA4, a gene encoding a heavy metal ATPase
    • Courbot, M., Willems, G., Motte, P., Arvidsson, S., Roosens, N., Saumitou-Laprade, P., and, Verbruggen, N., (2007) A major quantitative trait locus for cadmium tolerance in Arabidopsis halleri colocalizes with HMA4, a gene encoding a heavy metal ATPase. Plant Physiol. 144, 1052-1065.
    • (2007) Plant Physiol. , vol.144 , pp. 1052-1065
    • Courbot, M.1    Willems, G.2    Motte, P.3    Arvidsson, S.4    Roosens, N.5    Saumitou-Laprade, P.6    Verbruggen, N.7
  • 11
    • 0034193304 scopus 로고    scopus 로고
    • Involvement of NRAMP1 from Arabidopsis thaliana in iron transport
    • Curie, C., Alonso, J.M., Le Jean, M., Ecker, J.R., and, Briat, J.F., (2000) Involvement of NRAMP1 from Arabidopsis thaliana in iron transport. Biochem J. 347, 749-755.
    • (2000) Biochem J. , vol.347 , pp. 749-755
    • Curie, C.1    Alonso, J.M.2    Le Jean, M.3    Ecker, J.R.4    Briat, J.F.5
  • 13
    • 33747686130 scopus 로고    scopus 로고
    • QTL analysis of cadmium and zinc accumulation in the heavy metal hyperaccumulator Thlaspi caerulescens
    • Deniau, A. X., Pieper, B., Ten Bookum, W. M., Lindhout, P., Aarts, M. G., and, Schat, H., (2006) QTL analysis of cadmium and zinc accumulation in the heavy metal hyperaccumulator Thlaspi caerulescens. Theor. Appl. Genet., 113, 907-920.
    • (2006) Theor. Appl. Genet. , vol.113 , pp. 907-920
    • Deniau, A.X.1    Pieper, B.2    Ten Bookum, W.M.3    Lindhout, P.4    Aarts, M.G.5    Schat, H.6
  • 14
    • 58249117748 scopus 로고    scopus 로고
    • Cadmium sorption, influx, and efflux at the mesophyll layer of leaves from ecotypes of the Zn/Cd hyperaccumulator Thlaspi caerulescens
    • Ebbs, S.D., Clemencia Zambrano, M., Spiller, S., and, Newville, M., (2009) Cadmium sorption, influx, and efflux at the mesophyll layer of leaves from ecotypes of the Zn/Cd hyperaccumulator Thlaspi caerulescens. New Phytol. 181, 626-636.
    • (2009) New Phytol. , vol.181 , pp. 626-636
    • Ebbs, S.D.1    Clemencia Zambrano, M.2    Spiller, S.3    Newville, M.4
  • 15
    • 1342288026 scopus 로고    scopus 로고
    • Affy - Analysis of Affymetrix GeneChip data at the probe level
    • Gautier, L., Cope, L., Bolstad, B.M., and, Irizarry, R.A., (2004) Affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics, 20, 307-315.
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 17
    • 70349510789 scopus 로고    scopus 로고
    • Reciprocal grafting separates the roles of the root and shoot in zinc hyperaccumulation in Thlaspi caerulescens
    • de Guimarães, M.A., Gustin, J.L., and, Salt, D.E., (2009) Reciprocal grafting separates the roles of the root and shoot in zinc hyperaccumulation in Thlaspi caerulescens. New Phytol. 184, 323-329.
    • (2009) New Phytol. , vol.184 , pp. 323-329
    • De Guimarães, M.A.1    Gustin, J.L.2    Salt, D.E.3
  • 21
    • 77952497470 scopus 로고    scopus 로고
    • Metal hyperaccumulation in plants
    • Kramer, U., (2010) Metal hyperaccumulation in plants. Annu. Rev. Plant Biol. 61, 517-534.
    • (2010) Annu. Rev. Plant Biol. , vol.61 , pp. 517-534
    • Kramer, U.1
  • 22
    • 0345425785 scopus 로고    scopus 로고
    • Cellular compartmentation of zinc in leaves of the hyperaccumulator Thlaspi caerulescens
    • Küpper, H., Jie Zhao, F., and, McGrath, S.P., (1999) Cellular compartmentation of zinc in leaves of the hyperaccumulator Thlaspi caerulescens. Plant Physiol. 119, 305-312.
    • (1999) Plant Physiol. , vol.119 , pp. 305-312
    • Küpper, H.1    Jie Zhao, F.2    McGrath, S.P.3
  • 23
    • 1342308499 scopus 로고    scopus 로고
    • Tissue- and age- dependent differences in the complexation of cadmium and zinc in the cadmium/zinc hyperaccumulator Thlaspi caerulescens (Ganges ecotype) revealed by x-ray absorption spectroscopy
    • Küpper, H., Mijovilovich, A., Meyer-Klaucke, W., and, Kronneck, P.M., (2004) Tissue- and age- dependent differences in the complexation of cadmium and zinc in the cadmium/zinc hyperaccumulator Thlaspi caerulescens (Ganges ecotype) revealed by x-ray absorption spectroscopy. Plant Physiol. 134, 748-757.
    • (2004) Plant Physiol. , vol.134 , pp. 748-757
    • Küpper, H.1    Mijovilovich, A.2    Meyer-Klaucke, W.3    Kronneck, P.M.4
  • 24
    • 33947659471 scopus 로고    scopus 로고
    • A method for cellular localization of gene expression via quantitative in situ hybridization in plants
    • Küpper, H., Sieb, L.O., Sivaguru, M., Hoekenga, O.A., and, Kochian, L.V., (2007) A method for cellular localization of gene expression via quantitative in situ hybridization in plants. Plant J. 50, 159-175.
    • (2007) Plant J. , vol.50 , pp. 159-175
    • Küpper, H.1    Sieb, L.O.2    Sivaguru, M.3    Hoekenga, O.A.4    Kochian, L.V.5
  • 25
    • 0030476545 scopus 로고    scopus 로고
    • 2+ absorption and translocation to shoots in Zn hyperaccumulator and nonaccumulator species of Thlaspi
    • 2+ absorption and translocation to shoots in Zn hyperaccumulator and nonaccumulator species of Thlaspi. Plant Physiol. 112, 1715-1722.
    • (1996) Plant Physiol. , vol.112 , pp. 1715-1722
    • Lasat, M.M.1    Baker, A.J.M.2    Kochian, L.V.3
  • 26
    • 14944378043 scopus 로고    scopus 로고
    • 2+ absorption in to the leaf as mechanisms involved in zinc hyperaccumulation in Thlaspi caerulescens
    • 2+ absorption in to the leaf as mechanisms involved in zinc hyperaccumulation in Thlaspi caerulescens. Plant Physiol. 118, 875-883.
    • (1998) Plant Physiol. , vol.118 , pp. 875-883
    • Lasat, M.M.1    Baker, A.J.M.2    Kochian, L.V.3
  • 27
    • 0033969269 scopus 로고    scopus 로고
    • Molecular physiology of zinc transport in the Zn hyperaccumulator Thlaspi caerulescens
    • Lasat, M.M., Pence, N.S., Garvin, D.F., Ebbs, S.D., and, Kochian, L.V., (2000) Molecular physiology of zinc transport in the Zn hyperaccumulator Thlaspi caerulescens. J. Exp. Bot. 51, 71-79.
    • (2000) J. Exp. Bot. , vol.51 , pp. 71-79
    • Lasat, M.M.1    Pence, N.S.2    Garvin, D.F.3    Ebbs, S.D.4    Kochian, L.V.5
  • 28
    • 0035138095 scopus 로고    scopus 로고
    • Physiological evidence for a high affinity cadmium transporter in a Thlaspi caerulescens ecotype
    • Lombi, E., Zhao, F.J., McGrath, S.P., Young, S., and, Sacchi, G.A., (2001) Physiological evidence for a high affinity cadmium transporter in a Thlaspi caerulescens ecotype. New Phytol. 149, 53-60.
    • (2001) New Phytol. , vol.149 , pp. 53-60
    • Lombi, E.1    Zhao, F.J.2    McGrath, S.P.3    Young, S.4    Sacchi, G.A.5
  • 29
    • 0036010658 scopus 로고    scopus 로고
    • Influence of iron status on cadmium and zinc uptake by different ecotypes of the hyperaccumulator Thlaspi caerulescens
    • Lombi, E., Tearall, K.L., Howarth, J.R., Zhao, F.J., Hawkesford, M.J., and, McGrath, S.P., (2002) Influence of iron status on cadmium and zinc uptake by different ecotypes of the hyperaccumulator Thlaspi caerulescens. Plant Physiol. 128, 1359-1367.
    • (2002) Plant Physiol. , vol.128 , pp. 1359-1367
    • Lombi, E.1    Tearall, K.L.2    Howarth, J.R.3    Zhao, F.J.4    Hawkesford, M.J.5    McGrath, S.P.6
  • 30
    • 15444371012 scopus 로고    scopus 로고
    • Subcellular localisation of Cd and Zn in the leaves of a Cd-hyperaccumulating ecotype of Thlaspi caerulescens
    • Ma, J.F., Ueno, D., Zhao, F.J., and, McGrath, S.P., (2005) Subcellular localisation of Cd and Zn in the leaves of a Cd-hyperaccumulating ecotype of Thlaspi caerulescens. Planta, 220, 731-736.
    • (2005) Planta , vol.220 , pp. 731-736
    • Ma, J.F.1    Ueno, D.2    Zhao, F.J.3    McGrath, S.P.4
  • 31
    • 84861481607 scopus 로고    scopus 로고
    • Characterization of the high affinity Zn transporter from Noccaea caerulescens, NcZNT1, and dissection of its promoter for its role in Zn uptake and hyperaccumulation
    • doi: 10.1111/j.1469-8137.2012.04144.x.
    • Milner, M.J., Craft, E., Yamaji, N., Koyama, E., Ma, J.F., and, Kochian, L.V., (2012) Characterization of the high affinity Zn transporter from Noccaea caerulescens, NcZNT1, and dissection of its promoter for its role in Zn uptake and hyperaccumulation. New Phytol. 195, 113-123. doi: 10.1111/j.1469-8137.2012. 04144.x.
    • (2012) New Phytol. , vol.195 , pp. 113-123
    • Milner, M.J.1    Craft, E.2    Yamaji, N.3    Koyama, E.4    Ma, J.F.5    Kochian, L.V.6
  • 33
    • 79952505086 scopus 로고    scopus 로고
    • Tandem quadruplication of HMA4 in the zinc (Zn) and cadmium (Cd) hyperaccumulator Noccaea caerulescens
    • doi: 10.1371/journal.pone.0017814
    • Ó Lochlainn, S., Bowen, H.C., Fray, R.G., Hammond, J.P., King, G.J., White, P.J., Graham, N.S., and, Broadley, M.R., (2011) Tandem quadruplication of HMA4 in the zinc (Zn) and cadmium (Cd) hyperaccumulator Noccaea caerulescens. PLoS ONE, 6 (3), e17814. doi: 10.1371/journal.pone.0017814
    • (2011) PLoS ONE , vol.6 , Issue.3
    • Lochlainn S, Ó.1    Bowen, H.C.2    Fray, R.G.3    Hammond, J.P.4    King, G.J.5    White, P.J.6    Graham, N.S.7    Broadley, M.R.8
  • 34
    • 0042964866 scopus 로고    scopus 로고
    • Identifying model metal hyperaccumulating plants: Germplasm analysis of 20 Brassicaceae accessions from a wide geographical area
    • Peer, W. A., Mamoudian, M., Lahner, B., Reeves, R. D., Murphy, A. S., and, Salt, D. E., (2003) Identifying model metal hyperaccumulating plants: germplasm analysis of 20 Brassicaceae accessions from a wide geographical area. New Phytol., 159, 421-430.
    • (2003) New Phytol. , vol.159 , pp. 421-430
    • Peer, W.A.1    Mamoudian, M.2    Lahner, B.3    Reeves, R.D.4    Murphy, A.S.5    Salt, D.E.6
  • 36
    • 34547464246 scopus 로고    scopus 로고
    • Expression and functional analysis of metal transporter genes in two contrasting ecotypes of the hyperaccumulator Thlaspi caerulescens
    • Plaza, S., Tearall, K.L., Zhao, F.J., Buchner, P., McGrath, S.P., and, Hawkesford, M.J., (2007) Expression and functional analysis of metal transporter genes in two contrasting ecotypes of the hyperaccumulator Thlaspi caerulescens. J. Exp. Bot. 58, 1717-1728.
    • (2007) J. Exp. Bot. , vol.58 , pp. 1717-1728
    • Plaza, S.1    Tearall, K.L.2    Zhao, F.J.3    Buchner, P.4    McGrath, S.P.5    Hawkesford, M.J.6
  • 37
    • 0000505745 scopus 로고
    • Are phytochelatins involved in differential metal tolerance or do they merely reflect metal-imposed strain?
    • Schat, A., and, Kalff, M. A., (1992) Are phytochelatins involved in differential metal tolerance or do they merely reflect metal-imposed strain? Plant Physiol., 99, 1475-1480.
    • (1992) Plant Physiol. , vol.99 , pp. 1475-1480
    • Schat, A.1    Kalff, M.A.2
  • 38
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Article.
    • Smyth, G.K., (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3 (1), Article 3.
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3 , Issue.1 , pp. 3
    • Smyth, G.K.1
  • 39
    • 34547904667 scopus 로고    scopus 로고
    • Involvement of a soybean ATP-binding cassette-type transporter in the secretion of genistein, a signal flavonoid in legume-Rhizobium symbiosis
    • Sugiyama, A., Shitan, N., and, Yazaki, K., (2007) Involvement of a soybean ATP-binding cassette-type transporter in the secretion of genistein, a signal flavonoid in legume-Rhizobium symbiosis. Plant Physiol. 144, 2000-2008.
    • (2007) Plant Physiol. , vol.144 , pp. 2000-2008
    • Sugiyama, A.1    Shitan, N.2    Yazaki, K.3
  • 41
    • 79957621132 scopus 로고    scopus 로고
    • Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating ecotype of Noccaea caerulescens
    • Ueno, D., Milner, M., Yamaji, N., Yokosho, K., Koyama, E., Zambrano, C., Kaskie, M., Ebbs, S., Kochian, L., and, Ma, J.F., (2011) Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating ecotype of Noccaea caerulescens. Plant J. 66, 852-862.
    • (2011) Plant J. , vol.66 , pp. 852-862
    • Ueno, D.1    Milner, M.2    Yamaji, N.3    Yokosho, K.4    Koyama, E.5    Zambrano, C.6    Kaskie, M.7    Ebbs, S.8    Kochian, L.9    Ma, J.F.10
  • 42
    • 3543046198 scopus 로고    scopus 로고
    • Co-segregation analysis of cadmium and zinc accumulation in Thlaspi caerulescens interecotypic crosses
    • Zha, H.G., Jiang, R.F., Zhao, F.J., Vooijs, R., Schat, H., Barker, J.H.A., and, McGrath, S.P., (2004) Co-segregation analysis of cadmium and zinc accumulation in Thlaspi caerulescens interecotypic crosses. New Phytol. 163, 299-312.
    • (2004) New Phytol. , vol.163 , pp. 299-312
    • Zha, H.G.1    Jiang, R.F.2    Zhao, F.J.3    Vooijs, R.4    Schat, H.5    Barker, J.H.A.6    McGrath, S.P.7
  • 43
    • 0036008870 scopus 로고    scopus 로고
    • Characteristics of cadmium uptake in two contrasting ecotypes of the hyperaccumulator Thlaspi caerulescens
    • Zhao, F.J., Hamon, R.E., Lombi, E., McLaughlin, M.J., and, McGrath, S.P., (2002) Characteristics of cadmium uptake in two contrasting ecotypes of the hyperaccumulator Thlaspi caerulescens. J. Exp. Bot. 53, 535-543.
    • (2002) J. Exp. Bot. , vol.53 , pp. 535-543
    • Zhao, F.J.1    Hamon, R.E.2    Lombi, E.3    McLaughlin, M.J.4    McGrath, S.P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.