-
1
-
-
79952600759
-
Cython: The best of both worlds
-
Behnel, S. et al. (2011) Cython: the best of both worlds. Comput. Sci. Eng., 13, 31-39.
-
(2011)
Comput. Sci. Eng.
, vol.13
, pp. 31-39
-
-
Behnel, S.1
-
2
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium et al. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 7414, 57-74.
-
(2012)
Nature
, vol.7414
, pp. 57-74
-
-
Project Consortium, E.1
-
3
-
-
84866127830
-
Identifying ChIP-seq enrichment using MACS
-
Feng, J. et al. (2012) Identifying ChIP-seq enrichment using MACS. Nat. Protoc., 7, 1728-1740.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 1728-1740
-
-
Feng, J.1
-
4
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks, J. et al. (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
-
(2010)
Genome Biol.
, vol.11
-
-
Goecks, J.1
-
5
-
-
84865760395
-
GENCODE: The reference human genome annotation for the ENCODE Project
-
Harrow, J. et al. (2012) GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res., 22, 1760-1774.
-
(2012)
Genome Res.
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
-
6
-
-
84880968176
-
GAT: A simulation framework for testing the association of genomic intervals
-
Heger, A. et al. (2013) GAT: a simulation framework for testing the association of genomic intervals. Bioinformatics, 29, 2046-2048.
-
(2013)
Bioinformatics
, vol.29
, pp. 2046-2048
-
-
Heger, A.1
-
7
-
-
84875608234
-
The UCSC genome browser and associated tools
-
Kuhn, R.M. et al. (2013) The UCSC genome browser and associated tools. Brief. Bioinform., 14, 144-161.
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 144-161
-
-
Kuhn, R.M.1
-
8
-
-
84879049092
-
Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates
-
doi: 10.7554/eLife.00348
-
Long, H.K. et al. (2013) Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates. Elife, 2, e00348. doi: 10.7554/eLife.00348.
-
(2013)
Elife
, vol.2
-
-
Long, H.K.1
-
9
-
-
84902073371
-
Next-generation sequencing of advanced prostate cancer treated with androgen-deprivation therapy
-
[Epub ahead of print, doi: 10.1016/j.eururo.2013.08.011]
-
Rajan, P. et al. (2013) Next-generation Sequencing of Advanced Prostate Cancer Treated with Androgen-deprivation Therapy. Eur. Urol., [Epub ahead of print, doi: 10.1016/j.eururo.2013.08.011].
-
(2013)
Eur. Urol.
-
-
Rajan, P.1
-
10
-
-
84863304598
-
-
R Core Team. ISBN 3-900051-07-0. R Foundation for Statistical Computing, Vienna, Austria.
-
R Core Team. (2012) R: a language and environment for statistical computing. ISBN 3-900051-07-0. R Foundation for Statistical Computing, Vienna, Austria.
-
(2012)
R: A Language and Environment for Statistical Computing
-
-
-
11
-
-
77956885532
-
A ChIP-seq defined genome-wide map of vitamin D receptor binding: Associations with disease and evolution
-
Ramagopalan, S.V. et al. (2010) A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution. Genome Res., 20, 1352-1360.
-
(2010)
Genome Res.
, vol.20
, pp. 1352-1360
-
-
Ramagopalan, S.V.1
-
12
-
-
0013232044
-
-
Technical Report CS-R9526. Centrum voor Wiskunde en Informatica, Amsterdam
-
van Rossum, G. (1995) Python tutorial, Technical Report CS-R9526. Centrum voor Wiskunde en Informatica, Amsterdam.
-
(1995)
Python Tutorial
-
-
Van Rossum, G.1
-
13
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
14
-
-
84859899467
-
CLI-mate: An interface generator for command line programs
-
ACM, New York, NY, USA
-
Tatum, Z. et al. (2011) CLI-mate: an interface generator for command line programs. In: Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences. ACM, New York, NY, USA, pp. 114-115.
-
(2011)
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences
, pp. 114-115
-
-
Tatum, Z.1
-
15
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell, C. et al. (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc., 7, 562-567.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-567
-
-
Trapnell, C.1
|