Isolation, characterization and immunolocalization of a seed dominant CaM from finger millet (Eleusine coracana L. Gartn.) for studying its functional role in differential accumulation of calcium in developing grains

Applied Biochemistry and Biotechnology

Volumn 172, Issue 6, 2014, Pages 2955-2973

  Kumar, Anil ^a   Mirza, Neelofar ^a   Charan, Tara ^a   Sharma, Netrapal ^a   Gaur, Vikram Singh ^a  

^a G B PANT UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (India)

Author keywords

Calmodulin; EF hands; Finger millet; Immunolocalization; RACE; Southern blotting

Indexed keywords

CALCIUM; CAMS; GENES; GRAIN (AGRICULTURAL PRODUCT); MACHINERY;

EF-HAND; FINGER MILLETS; IMMUNOLOCALIZATION; RACE; SOUTHERN BLOTTING;

CALMODULIN;

CALCIUM; CALMODULIN; COMPLEMENTARY DNA; RNA;

ARTICLE; FINGER MILLET; GENE EXPRESSION; GENE SEQUENCE; GENOME; GENOTYPE; GRAIN; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT SEED; REAL TIME POLYMERASE CHAIN REACTION; SOUTHERN BLOTTING; WESTERN BLOTTING;

ELEUSINE CORACANA;

AMINO ACID MOTIFS; AQUAPORINS; BASE SEQUENCE; CALCIUM; CALMODULIN; CEREALS; ELEUSINE; GENE DOSAGE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; GENOTYPE; ION TRANSPORT; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; ORYZA SATIVA; PHYLOGENY; PLANT PROTEINS; PROTEIN INTERACTION MAPPING; SEEDS;

EID: 84899477892     PISSN: 02732289     EISSN: 15590291     Source Type: Journal    
DOI: 10.1007/s12010-013-0714-0     Document Type: Article

References (58)

1. National Research Council (1996). Lost Crops of Africa (Grains, Vol. I). Washington, D.C: National Academy Press.
2. Vadivoo, A. S., Joseph, R., & Ganesan, N. M. (1998). Genetic variability and diversity for protein and calcium contents in finger millet (Eleusine coracana (L.) Gaertn.) in relation to grain color. Plant Foods Human Nutrition, 52, 353-364. (Pubitemid 29311605)
3. Antony, U., & Chandra, T. S. (1998). Antinutrient reduction and enhancement in protein, starch, and mineral availability in fermented flour of finger millet (Eleusine coracana). Journal of Agricultural and Food Chemistry, 46, 2578-2582. (Pubitemid 128488338)
4. Barbeau, W. E., & Hilu, K. W. (1993). Protein, calcium, iron and amino acid content of selected wild and domesticated cultivars of finger millet. Plant Foods for Human Nutrition, 43, 97-104.
5. Panwar, P., Nath, M., Yadav, V. K., & Kumar, A. (2010). Comparative evaluation of genetic diversity using RAPD, SSR and cytochome P450 gene based markers with respect to calcium content in finger millet (Eleusine coracana L. Gaertn.). Journal of Genetics, 89, 121-133.
6. 2+-activated channel TPC1 regulates germination and stomatal movement. Nature, 434, 404-408.
7. Medvedev, S. S. (2005). Calcium signaling system in plants. Russian Journal Plant Physiology, 52(2), 249-270.
8. McAinsh, M. R., & Pittman, J. K. (2009). Shaping the calcium signature. New Phytologist, 161, 275-294. (Pubitemid 352840372)
9. Babu, Y. S., Sack, J. S., Greenhough, T. J., Bugg, C. E., Means, A. R., & Cook, W. J. (1985). Three-dimensional structure of calmodulin. Nature, 315, 37-40.
10. Zielinski, R. E. (1998). Calmodulin and calmodulin-binding proteins in plants. Annual Review of Plant Physiology and Plant Molecular Biology, 49, 697-725.
11. 2+ signalling pathways in plant cells. New Phytologist, 151, 7-33.
12. Fasano, J. M., Massa, G. D., & Gilroy, S. (2002). Ionic signaling in plant responses to gravity and touch. Journal of Plant Growth Regulation, 21, 71-88. (Pubitemid 34788823)
13. Bouché, N., Scharlat, A., Snedden, W., Bouchez, D., & Fromm, H. (2002). A novel family of calmodulin-binding transcription activators inmulticellular organisms. Journal of Biological Chemistry, 277, 21851-21861. (Pubitemid 34952338)
14. McCormack, E., Tsai, Y. C., & Braam, J. (2005). Handling calcium signaling: Arabidopsis CaMs and CMLs. Trends in Plant Science, 10(8), 383-389. (Pubitemid 41059666)
15. Bouché, N., Yellin, A., Snedden, W. A., & Fromm, H. (2005). Plant specific calmodulin-binding proteins. Annual Review of Plant Biology, 56, 435-466.
16. Galon, Y., Nave, R., Boyce, J. M., Nachmias, D., Knight, M. R., & Fromm, H. (2008). Calmodulin-binding transcription activator (CAMTA) 3 mediates biotic defense responses in Arabidopsis. FEBS Letters, 582, 943-948.
17. Doherty, C. J., Van Buskirk, H. A., Myers, S. J., & Thomashow, M. F. (2009). Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell, 21, 972-984.
18. Wang, Q., Chen, B., Lui, O., Zheng, M., Wang, Y., Sun, D., et al. (2009). Calmodulin binds to extracellular sites on the plasma membrane of plant cells and elicits a rise in intracellular calcium concentration. Journal of Biological Chemistry, 284, 12000-12007.
19. Ikura, M., & Ames, J. B. (2006). Genetic polymorphism and protein conformational plasticity in the calmodulin superfamily: two ways to promote multifunctionality. Proceedings of the National Academy of Sciences of the United States of America, 103, 1159-1164. (Pubitemid 43191135)
20. Amtmann, A., & Blatt, M. R. (2009). Regulation of macronutrient transport. New Phytologist, 181, 35-52.
21. 2+ pump is required for normal pollen tube growth and fertilization. Proceedings of the National Academy of Sciences of the United States of America, 101, 9502-9507.
22. Ali, R., Ma, W., Lemtiri-Chlieh, F., Tsaltas, D., Leng, Q., Von Bodman, S., et al. (2007). Death don't have no mercy and neither does calcium: Arabidopsis Cyclic Nucleotide Gated Channel 2 and innate immunity. Plant Cell, 19, 1081-1095. (Pubitemid 46953248)
23. Allen, G. J., Chu, S. P., Harrington, C. L., Schumacher, K., Hoffmann, T., Tang, Y. Y., et al. (2001). A defined range of guard cell calcium oscillation parameters encodes stomatal movements. Nature, 411, 1053-1057. (Pubitemid 32612330)
24. Harper, J. F. (2001). Dissecting calcium oscillators in plant cells. Trends in Plant Science, 6(9), 395-397.
25. Karley, A. J., & White, P. J. (2009). Moving cationic minerals to edible tissues: potassium, magnesium, calcium. Current Opinion in Plant Biology, 12, 291-298.
26. Nath, M., Goel, A., Taj, G., & Kumar, A. (2010). Molecular Cloning and Comparative In silico Analysis of Calmodulin Genes from Cereals and Millets for Understanding the Mechanism of Differential Calcium Accumulation. Journal of Proteomics Bioinformatics, 3, 294-301.
27. Livak, K. J., & Schmittgen, T. D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2-DDCT method. Methods, 25, 402-408. (Pubitemid 34164012)
28. Finn, R. D., Mistry, J., Schuster-Bockler, B., Griffiths- Jones, S., Hollich, V., Lassmann, T., et al. (2006). Pfam: Clans, web tools and services. Nucleic Acids Research, 34, D247-D2451.
29. Castro, E. D., Sigrist, C. J., Gattiker, A., Bulliard, V., Langendijk-Genevaux, P. S., Gasteiger, E., et al. (2006). ScanProsite: Detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Research, 34, W362-W365. (Pubitemid 44538121)
30. Quevillon, E., Silventoinen, V., Pillai, S., Harte, N., Mulder, N., Apweiler, R., et al. (2005). InterProScan: Protein domains identifier. Nucleic Acids Research, 33, W116-W120. (Pubitemid 44529891)
31. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and maximum Parsimony Methods. Molecular Biology and Evolution, 28, 2731-2739.
32. Murray, M. G., & Thompson, W. F. (1980). Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research, 8(19), 4321-4326.
33. Sambrook, J., Fristch, E. F, & Maniartis, T. (1989). Molecular Cloning: A Laboratory Manual. Cold Spring Harbour Laboratory Press.
34. Weiss, C. A., Huang, H., & Má, H. (1993). lmmunolocalization of the G Protein α Subunit Encoded by the GPA1 Gene in Arabidopsis. The Plant Cell, 5, 1513-1528. (Pubitemid 2021765)
35. Jackson, D. P. (1992). In situ hybridization in plants. In D. J. Bowles, S. J. Gurr, & M. McPhereson (Eds.), Molecular Plant Pathology: A Practical Approach (pp. 163-174). Oxford: Oxford University Press.
36. Ling, V., Perera, I., & Zielinski, R. E. (1991). Primary Structures of Arabidopsis Calmodulin Isoforms Deduced from the Sequences of cDNA Clones. Plant Physiology, 96, 1196-1202. (Pubitemid 21914148)
37. Lee, S. H., Kim, J. C., Lee, M. S., Heo, W. D., & Hae, Y. S. (1995). Identification of a Novel Divergent Calmodulin Isoform from Soybean Which Has Differential Ability to Activate Calmodulin-dependent Enzymes. Journal of Biological Chemistry, 270(37), 21806-21812.
38. McCormack, E., & Braam, J. (2003). Calmodulins and related potential calcium sensors of Arabidopsis. New Phytologist, 159, 585-598. (Pubitemid 37024063)
39. 2+ sensors in plant signaling. Biochemical Journal, 425, 27-40.
40. Srinivasachary Mathews, M., Dida Mike, D., Gale Katrien, M., & Devos. (2007). Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes. Theoretical and Applied Genetics, 115, 489-499.
41. Nath, M., Roy, P., Shukla, A., & Kumar, A. (2013). Spatial distribution and accumulation of calcium in different tissues, developing spikes and seeds of finger millet genotypes. Journal of Plant Nutrition, 36(4), 539-550. doi:10.1080/01904167.2012.748072.
42. Heinen, R. B., Ye, Q., & Chaumont, F. (2009). Role of aquaporins in leaf physiology. Journal of Experimental Botany, 60(11), 2971-2985.
43. Barber, S. A. (1995). Soil Nutrient Bioavailability: A Mechanistic Approach (IIth ed., pp. 268-272). New York: Wiley.
44. Gilliham, M., Dayod, M., Hocking, B. J., Xu, B., Conn, S. J., Kaiser, B. N., et al. (2011). Calcium delivery and storage in plant leaves: exploring the link with water flow. Journal of Experimental Botany, 62, 2233-2250.
45. Park, C. Y., Lee, J. H., Yoo, J. H., Moon, B. C., Choi, M. S., Kang, Y. H., et al. (2005). WRKY group II transcription factors interact with calmodulin. FEBS Letters, 579, 1545-1550. (Pubitemid 40289210)
46. +-ATPase activity. Planta, 227, 659-669.
47. 2+/calmodulin-dependent protein kinase. Plant Physiology, 145, 1619-1628.
48. Chung, W.S., Lee, S.H., Kim, J.C., Heo, W.D., Kim, M.C., Park, C.Y., Park, H.C., Lim, C.O., Kim, W.B., Harper, J.F., & Cho, M.J. (2000). Identification of a Calmodulin-Regulated Soybean Ca2+-ATPase (SCA1) That Is Located in the Plasma Membrane. The Plant Cell 12, 1393-1407. Cold Spring Harbor Laboratory Press, New York.
49. Bailey, T. L., Williams, N., Misleh, C., & Li, W. W. (2006). MEME: Discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Research, 34, W369-W373. (Pubitemid 44529795)
50. Langdale, J. A. (1993). In situ hybridization. In V. Walbot & M. Freeling (Eds.), The Maize Handbook (pp. 165-180). New York: Springer-Verlag.
51. Boonburapong, B., & Buaboocha, T. (2007). Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins. BMC Plant Biology, 7, 4.
52. Yang, T., & Poovaiah, B. W. (2002). A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. Journal of Biological Chemistry, 277, 45049-45058. (Pubitemid 36159105)
53. Yang, T., & Poovaiah, B. W. (2003). Calcium/calmodulin-mediated signal network in plants. Trends in Plant Science, 8, 505-512. (Pubitemid 37325561)
54. Yang, T., & Poovaiah, B. W. (2000). An early ethylene up-regulated gene encoding a calmodulin-binding protein involved in plant senescence and death. Journal of Biological Chemistry, 275, 38467-38473. (Pubitemid 32009172)
55. Godfroy, O., Debelle, F., Timmers, T., & Rosenberg, C. (2006). A rice calcium-and calmodulin-dependent protein kinase restores nodulation to a legume mutant. Molecular Plant-Microbe Interactions, 19, 495-501. (Pubitemid 43668273)
56. 2+ and calmodulin-dependent protein kinase required for bacterial and fungal symbioses. Science, 303, 1361-1364.
57. 2+/calmodulin- dependent kinase leads to spontaneous nodule development. Nature, 441, 1153-1156.
58. Studier, F. W., Rosenberg, A. H., Dunn, J. J., & Dubendorff, J. W. (1990). Use of T7 RNA polymerase to direct expression of cloned genes. Methods in Enzymology, 185, 60-89. (Pubitemid 20219811)