-
1
-
-
84863230177
-
Phylogeny and Molecular Evolution of the Green Algae
-
Leliaert F, Smith DR, Moreau H, Herron MD, Verbruggen H, Delwiche CF, De Clerck O. Phylogeny and Molecular Evolution of the Green Algae. Crit Rev Plant Sci 2012, 31(1):1-46.
-
(2012)
Crit Rev Plant Sci
, vol.31
, Issue.1
, pp. 1-46
-
-
Leliaert, F.1
Smith, D.R.2
Moreau, H.3
Herron, M.D.4
Verbruggen, H.5
Delwiche, C.F.6
De Clerck, O.7
-
2
-
-
33646695266
-
The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured
-
de Koning AP, Keeling PJ. The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured. BMC Biol 2006, 4:12.
-
(2006)
BMC Biol
, vol.4
, pp. 12
-
-
de Koning, A.P.1
Keeling, P.J.2
-
3
-
-
0036845754
-
The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats
-
Maul JE, Lilly JW, Cui L, de Pamphilis CW, Miller W, Harris EH, Stern DB. The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. The Plant cell 2002, 14(11):2659-2679.
-
(2002)
The Plant cell
, vol.14
, Issue.11
, pp. 2659-2679
-
-
Maul, J.E.1
Lilly, J.W.2
Cui, L.3
de Pamphilis, C.W.4
Miller, W.5
Harris, E.H.6
Stern, D.B.7
-
4
-
-
33846849230
-
A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies
-
Lemieux C, Otis C, Turmel M. A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies. BMC Biol 2007, 5:2.
-
(2007)
BMC Biol
, vol.5
, pp. 2
-
-
Lemieux, C.1
Otis, C.2
Turmel, M.3
-
5
-
-
33646890404
-
The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants
-
Turmel M, Otis C, Lemieux C. The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants. Mol Biol Evol 2006, 23(6):1324-1338.
-
(2006)
Mol Biol Evol
, vol.23
, Issue.6
, pp. 1324-1338
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
6
-
-
84986799927
-
Unique chloroplast genome in spirogyra maxima (chlorophyta) revealed by physical and gene mapping1
-
Manhart JR, Hoshaw RW, Palmer JD. Unique chloroplast genome in spirogyra maxima (chlorophyta) revealed by physical and gene mapping1. J Phycol 1990, 26(3):490-494.
-
(1990)
J Phycol
, vol.26
, Issue.3
, pp. 490-494
-
-
Manhart, J.R.1
Hoshaw, R.W.2
Palmer, J.D.3
-
7
-
-
0024653980
-
Unusual characteristics of Codium fragile chloroplast DNA revealed by physical and gene mapping
-
Manhart JR, Kelly K, Dudock BS, Palmer JD. Unusual characteristics of Codium fragile chloroplast DNA revealed by physical and gene mapping. MGG Mol Gen Genet 1989, 216(2-3):417-421.
-
(1989)
MGG Mol Gen Genet
, vol.216
, Issue.2-3
, pp. 417-421
-
-
Manhart, J.R.1
Kelly, K.2
Dudock, B.S.3
Palmer, J.D.4
-
8
-
-
0026359706
-
The putative mitochondrial genome of Plasmodium falciparum
-
Feagin JE, Gardner MJ, Williamson DH, Wilson RJ. The putative mitochondrial genome of Plasmodium falciparum. J protozool 1991, 38(3):243-245.
-
(1991)
J protozool
, vol.38
, Issue.3
, pp. 243-245
-
-
Feagin, J.E.1
Gardner, M.J.2
Williamson, D.H.3
Wilson, R.J.4
-
9
-
-
0019441235
-
The mitochondrial genome is large and variable in a family of plants (cucurbitaceae)
-
Ward BL, Anderson RS, Bendlich AJ. The mitochondrial genome is large and variable in a family of plants (cucurbitaceae). Cell 1981, 25(3):793-803.
-
(1981)
Cell
, vol.25
, Issue.3
, pp. 793-803
-
-
Ward, B.L.1
Anderson, R.S.2
Bendlich, A.J.3
-
10
-
-
10944243685
-
Mitochondria Of Protists
-
vol. 38
-
Gray MW, Lang BF, Burger G. Mitochondria Of Protists. 2004, 477-524. vol. 38.
-
(2004)
, pp. 477-524
-
-
Gray, M.W.1
Lang, B.F.2
Burger, G.3
-
11
-
-
0036409693
-
Following the path of carbon in photosynthesis: a personal story
-
Benson AA. Following the path of carbon in photosynthesis: a personal story. Photosynth Res 2002, 73(1-3):29-49.
-
(2002)
Photosynth Res
, vol.73
, Issue.1-3
, pp. 29-49
-
-
Benson, A.A.1
-
12
-
-
0000099993
-
Inferring taxonomic positions and testing genus level assignments in coccoid green lichen algae: a phylogenetic analysis of 18 s ribosomal rna sequences from dictyochloropsis reticulata and from members of the genus myrmecia (chlorophyta, trebouxiophyceae cl. Nov.)1
-
Friedl T. Inferring taxonomic positions and testing genus level assignments in coccoid green lichen algae: a phylogenetic analysis of 18 s ribosomal rna sequences from dictyochloropsis reticulata and from members of the genus myrmecia (chlorophyta, trebouxiophyceae cl. Nov.)1. J Phycol 1995, 31(4):632-639.
-
(1995)
J Phycol
, vol.31
, Issue.4
, pp. 632-639
-
-
Friedl, T.1
-
13
-
-
84880201514
-
Plastid Genomes of Algae
-
Netherlands: Springer, Bock R, Knoop V, vol. 35
-
Lang BF, Nedelcu A. Plastid Genomes of Algae. Genomics of Chloroplasts and Mitochondria 2012, 59-87. Netherlands: Springer, Bock R, Knoop V, vol. 35.
-
(2012)
Genomics of Chloroplasts and Mitochondria
, pp. 59-87
-
-
Lang, B.F.1
Nedelcu, A.2
-
14
-
-
84868128239
-
Complete mitochondrial and plastid genomes of the green microalga Trebouxiophyceae sp. strain MX-AZ01 isolated from a highly acidic geothermal lake
-
Servín-Garcidueñas LE, Martínez-Romero E. Complete mitochondrial and plastid genomes of the green microalga Trebouxiophyceae sp. strain MX-AZ01 isolated from a highly acidic geothermal lake. Eukaryotic Cell 2012, 11(11):1417-1418.
-
(2012)
Eukaryotic Cell
, vol.11
, Issue.11
, pp. 1417-1418
-
-
Servín-Garcidueñas, L.E.1
Martínez-Romero, E.2
-
15
-
-
12644284525
-
Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division
-
Wakasugi T, Nagai T, Kapoor M, Sugita M, Ito M, Ito S, Tsudzuki J, Nakashima K, Tsudzuki T, Suzuki Y, Hamada A, Ohta T, Inamura A, Yoshinaga K, Sugiura M. Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division. Proc Natl Acad Sci U S A 1997, 94(11):5967-5972.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, Issue.11
, pp. 5967-5972
-
-
Wakasugi, T.1
Nagai, T.2
Kapoor, M.3
Sugita, M.4
Ito, M.5
Ito, S.6
Tsudzuki, J.7
Nakashima, K.8
Tsudzuki, T.9
Suzuki, Y.10
Hamada, A.11
Ohta, T.12
Inamura, A.13
Yoshinaga, K.14
Sugiura, M.15
-
16
-
-
0028330225
-
Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome organization
-
Wolff G, Plante I, Lang BF, Kuck U, Burger G. Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome organization. J Mol Biol 1994, 237(1):75-86.
-
(1994)
J Mol Biol
, vol.237
, Issue.1
, pp. 75-86
-
-
Wolff, G.1
Plante, I.2
Lang, B.F.3
Kuck, U.4
Burger, G.5
-
17
-
-
77749245925
-
The mitochondrial genome of the entomoparasitic green alga helicosporidium
-
Pombert JF, Keeling PJ. The mitochondrial genome of the entomoparasitic green alga helicosporidium. PLoS One 2010, 5(1):e8954.
-
(2010)
PLoS One
, vol.5
, Issue.1
-
-
Pombert, J.F.1
Keeling, P.J.2
-
18
-
-
80052067631
-
The GC-rich mitochondrial and plastid genomes of the green alga coccomyxa give insight into the evolution of organelle DNA nucleotide landscape
-
Smith DR, Burki F, Yamada T, Grimwood J, Grigoriev IV, van Etten JL, Keeling PJ. The GC-rich mitochondrial and plastid genomes of the green alga coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. PLoS One 2011, 6(8):e23624.
-
(2011)
PLoS One
, vol.6
, Issue.8
-
-
Smith, D.R.1
Burki, F.2
Yamada, T.3
Grimwood, J.4
Grigoriev, I.V.5
van Etten, J.L.6
Keeling, P.J.7
-
19
-
-
84868377435
-
A new Arctic Chlorella species for biodiesel production
-
Ahn JW, Hwangbo K, Lee SY, Choi HG, Park YI, Liu JR, Jeong WJ. A new Arctic Chlorella species for biodiesel production. Bioresour Technol 2012, 125:340-343.
-
(2012)
Bioresour Technol
, vol.125
, pp. 340-343
-
-
Ahn, J.W.1
Hwangbo, K.2
Lee, S.Y.3
Choi, H.G.4
Park, Y.I.5
Liu, J.R.6
Jeong, W.J.7
-
20
-
-
3142719794
-
Circular chloroplast chromosomes: the grand illusion
-
Bendich AJ. Circular chloroplast chromosomes: the grand illusion. Plant cell 2004, 16(7):1661-1666.
-
(2004)
Plant cell
, vol.16
, Issue.7
, pp. 1661-1666
-
-
Bendich, A.J.1
-
21
-
-
0347123538
-
Most chloroplast DNA of maize seedlings in linear molecules with defined ends and branched forms
-
Oldenburg DJ, Bendich AJ. Most chloroplast DNA of maize seedlings in linear molecules with defined ends and branched forms. J Mol Biol 2004, 335(4):953-970.
-
(2004)
J Mol Biol
, vol.335
, Issue.4
, pp. 953-970
-
-
Oldenburg, D.J.1
Bendich, A.J.2
-
22
-
-
70349921146
-
The chloroplast genomes of the green algae pedinomonas minor, parachlorella kessleri, and oocystis solitaria reveal a shared ancestry between the pedinomonadales and chlorellales
-
Turmel M, Otis C, Lemieux C. The chloroplast genomes of the green algae pedinomonas minor, parachlorella kessleri, and oocystis solitaria reveal a shared ancestry between the pedinomonadales and chlorellales. Mol Biol Evol 2009, 26(10):2317-2331.
-
(2009)
Mol Biol Evol
, vol.26
, Issue.10
, pp. 2317-2331
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
23
-
-
8744308029
-
Properties of overlapping genes are conserved across microbial genomes
-
Johnson ZI, Chisholm SW. Properties of overlapping genes are conserved across microbial genomes. Genome Res 2004, 14(11):2268-2272.
-
(2004)
Genome Res
, vol.14
, Issue.11
, pp. 2268-2272
-
-
Johnson, Z.I.1
Chisholm, S.W.2
-
24
-
-
0021007202
-
Overlapping genes
-
Normark S, Bergström S, Edlund T, Grundström T, Jaurin B, Lindberg FP, Olsson O. Overlapping genes. Annu Rev Genet 1983, 17:499-525.
-
(1983)
Annu Rev Genet
, vol.17
, pp. 499-525
-
-
Normark, S.1
Bergström, S.2
Edlund, T.3
Grundström, T.4
Jaurin, B.5
Lindberg, F.P.6
Olsson, O.7
-
25
-
-
10744227931
-
Mammalian overlapping genes: the comparative perspective
-
Veeramachaneni V, Makałowski W, Galdzicki M, Sood R, Makałowska I. Mammalian overlapping genes: the comparative perspective. Genome Res 2004, 14(2):280-286.
-
(2004)
Genome Res
, vol.14
, Issue.2
, pp. 280-286
-
-
Veeramachaneni, V.1
Makałowski, W.2
Galdzicki, M.3
Sood, R.4
Makałowska, I.5
-
26
-
-
0034104829
-
The cyanobacterial origin and vertical transmission of the plastid tRNA(Leu) group-I intron
-
Besendahl A, Qiu YL, Lee J, Palmer JD, Bhattacharya D. The cyanobacterial origin and vertical transmission of the plastid tRNA(Leu) group-I intron. Curr Genet 2000, 37(1):12-23.
-
(2000)
Curr Genet
, vol.37
, Issue.1
, pp. 12-23
-
-
Besendahl, A.1
Qiu, Y.L.2
Lee, J.3
Palmer, J.D.4
Bhattacharya, D.5
-
27
-
-
0025707121
-
An ancient group I intron shared by eubacteria and chloroplasts
-
Kuhsel MG, Strickland R, Palmer JD. An ancient group I intron shared by eubacteria and chloroplasts. Science 1990, 250(4987):1570-1573.
-
(1990)
Science
, vol.250
, Issue.4987
, pp. 1570-1573
-
-
Kuhsel, M.G.1
Strickland, R.2
Palmer, J.D.3
-
28
-
-
84899474736
-
Three ORF-Containing Group I Introns in Chloroplast SSU of Caulerpa sertularioides (Ulvophyceae) and Their Evolutionary Implications
-
Lee J, Manhart JR. Three ORF-Containing Group I Introns in Chloroplast SSU of Caulerpa sertularioides (Ulvophyceae) and Their Evolutionary Implications. Algae 2003, 18:183-190.
-
(2003)
Algae
, vol.18
, pp. 183-190
-
-
Lee, J.1
Manhart, J.R.2
-
29
-
-
0030830235
-
Phylogenetic analyses of the rbcL sequences from haptophytes and heterokont algae suggest their chloroplasts are unrelated
-
Daugbjerg N, Andersen RA. Phylogenetic analyses of the rbcL sequences from haptophytes and heterokont algae suggest their chloroplasts are unrelated. Mol Biol Evol 1997, 14(12):1242-1251.
-
(1997)
Mol Biol Evol
, vol.14
, Issue.12
, pp. 1242-1251
-
-
Daugbjerg, N.1
Andersen, R.A.2
-
30
-
-
0028341133
-
A gene phylogeny of the red algae (Rhodophyta) based on plastid rbcL
-
Freshwater DW, Fredericq S, Butler BS, Hommersand MH, Chase MW. A gene phylogeny of the red algae (Rhodophyta) based on plastid rbcL. Proc Natl Acad Sci U S A 1994, 91(15):7281-7285.
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, Issue.15
, pp. 7281-7285
-
-
Freshwater, D.W.1
Fredericq, S.2
Butler, B.S.3
Hommersand, M.H.4
Chase, M.W.5
-
31
-
-
0028456067
-
Phylogenetic analysis of green plant rbcL sequences
-
Manhart JR. Phylogenetic analysis of green plant rbcL sequences. Mol Phylogenet Evol 1994, 3(2):114-127.
-
(1994)
Mol Phylogenet Evol
, vol.3
, Issue.2
, pp. 114-127
-
-
Manhart, J.R.1
-
32
-
-
34249031139
-
Marinichlorella Kaistiae gen. et sp. nov. (Trebouxiophyceae, Chlorophyta) based on polyphasic taxonomy
-
Aslam Z, Shin W, Kim MK, Im WT, Lee ST. Marinichlorella Kaistiae gen. et sp. nov. (Trebouxiophyceae, Chlorophyta) based on polyphasic taxonomy. J Phycol 2007, 43(3):576-584.
-
(2007)
J Phycol
, vol.43
, Issue.3
, pp. 576-584
-
-
Aslam, Z.1
Shin, W.2
Kim, M.K.3
Im, W.T.4
Lee, S.T.5
-
33
-
-
84858706979
-
Selection, breeding and engineering of microalgae for bioenergy and biofuel production
-
Larkum AWD, Ross IL, Kruse O, Hankamer B. Selection, breeding and engineering of microalgae for bioenergy and biofuel production. Trends Biotechnol 2012, 30(4):198-205.
-
(2012)
Trends Biotechnol
, vol.30
, Issue.4
, pp. 198-205
-
-
Larkum, A.W.D.1
Ross, I.L.2
Kruse, O.3
Hankamer, B.4
-
35
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 2007, 23(6):673-679.
-
(2007)
Bioinformatics
, vol.23
, Issue.6
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
36
-
-
1242297827
-
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
-
ARAGORN, tRNA (and tmRNA) detection.
-
Laslett D, Canback B. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res 2004, 32(1):11-16. ARAGORN, tRNA (and tmRNA) detection. http://130.235.46.10/ARAGORN/.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.1
, pp. 11-16
-
-
Laslett, D.1
Canback, B.2
-
37
-
-
0033985046
-
5S ribosomal RNA database Y2K
-
5S RIBOSOMAL RNA DATABASE.
-
Szymanski M, Barciszewska MZ, Barciszewski J, Erdmann VA. 5S ribosomal RNA database Y2K. Nucleic Acids Res 2000, 28(1):166-167. 5S RIBOSOMAL RNA DATABASE. http://rose.man.poznan.pl/5SData/.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 166-167
-
-
Szymanski, M.1
Barciszewska, M.Z.2
Barciszewski, J.3
Erdmann, V.A.4
-
38
-
-
77956193448
-
ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
-
Darling AE, Mau B, Perna NT. ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 2010, 5(6):e11147.
-
(2010)
PLoS One
, vol.5
, Issue.6
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
39
-
-
77956519355
-
GenoPlotR: comparative gene and genome visualization in R
-
Guy L, Kultima JR, Andersson SG. genoPlotR: comparative gene and genome visualization in R. Bioinformatics 2010, 26(18):2334-2335.
-
(2010)
Bioinformatics
, vol.26
, Issue.18
, pp. 2334-2335
-
-
Guy, L.1
Kultima, J.R.2
Andersson, S.G.3
-
40
-
-
0023664964
-
Structural conventions for group I introns
-
Burke JM, Belfort M, Cech TR, Davies RW, Schweyen RJ, Shub DA, Szostak JW, Tabak HF. Structural conventions for group I introns. Nucleic Acids Res 1987, 15(18):7217-7221.
-
(1987)
Nucleic Acids Res
, vol.15
, Issue.18
, pp. 7217-7221
-
-
Burke, J.M.1
Belfort, M.2
Cech, T.R.3
Davies, R.W.4
Schweyen, R.J.5
Shub, D.A.6
Szostak, J.W.7
Tabak, H.F.8
-
41
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel F, Westhof E. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol 1990, 216(3):585-610.
-
(1990)
J Mol Biol
, vol.216
, Issue.3
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
42
-
-
77956489507
-
PtRNAss: Prediction of tRNA secondary structure from nucleotide sequences
-
Chuang LY, Lin YD, Yang CH. PtRNAss: Prediction of tRNA secondary structure from nucleotide sequences. IAENG Int J Comput Sci 2010, 37(3):204-209.
-
(2010)
IAENG Int J Comput Sci
, vol.37
, Issue.3
, pp. 204-209
-
-
Chuang, L.Y.1
Lin, Y.D.2
Yang, C.H.3
|