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Volumn 13, Issue 2, 2014, Pages 303-310

Bacterial diversity of gut content in sea cucumber (Apostichopus japonicus) and its habitat surface sediment

Author keywords

Apostichopus japonicus; bacterium; gut content; PCR DGGE; sea cucumber; sediment

Indexed keywords


EID: 84899455671     PISSN: 16725182     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11802-014-2078-7     Document Type: Article
Times cited : (29)

References (44)
  • 1
    • 84857008825 scopus 로고    scopus 로고
    • High prokaryotic biodiversity associated with gut contents of the holothurian Molpadia musculus from the Nazaré Canyon (NE Atlantic)
    • Amaro, T., Luna, G. M., Danovaro, R., Billett, D. S. M., and Cunha, M. R., 2012. High prokaryotic biodiversity associated with gut contents of the holothurian Molpadia musculus from the Nazaré Canyon (NE Atlantic). Deep Sea Research Part I, 63: 82-90.
    • (2012) Deep Sea Research Part I , vol.63 , pp. 82-90
    • Amaro, T.1    Luna, G.M.2    Danovaro, R.3    Billett, D.S.M.4    Cunha, M.R.5
  • 2
    • 67949124620 scopus 로고    scopus 로고
    • Deep-sea bacterial communities in sediments and guts of deposit-feeding holothurians in Portuguese canyons (NE Atlantic)
    • Amaro, T., Witte, H., Herndl, G. J., Cunha, M. R., and Billett, D. S. M., 2009. Deep-sea bacterial communities in sediments and guts of deposit-feeding holothurians in Portuguese canyons (NE Atlantic). Deep Sea Research Part I, 56: 1834-1843.
    • (2009) Deep Sea Research Part I , vol.56 , pp. 1834-1843
    • Amaro, T.1    Witte, H.2    Herndl, G.J.3    Cunha, M.R.4    Billett, D.S.M.5
  • 5
    • 84894825324 scopus 로고    scopus 로고
    • Study of microbial population succession in MBR at different stages
    • Chen, Y., Sun, B., Huang, X., and Zhang, B., 2009. Study of microbial population succession in MBR at different stages. Chinese Journal of Environmental Engineering, 3: 1023-1028 (in Chinese with English abstract).
    • (2009) Chinese Journal of Environmental Engineering , vol.3 , pp. 1023-1028
    • Chen, Y.1    Sun, B.2    Huang, X.3    Zhang, B.4
  • 6
    • 84899432538 scopus 로고    scopus 로고
    • PCR-DGGE analysis of bacterial community composition in the gut contents of Apostichopus japonicus
    • Gao, F., Sun, H., Xu, Q., Tan, J., Yan, J., and Wang, Q., 2010a. PCR-DGGE analysis of bacterial community composition in the gut contents of Apostichopus japonicus. Journal of Fishery Sciences of China, 17: 672-680 (in Chinese with English abstract).
    • (2010) Journal of Fishery Sciences of China , vol.17 , pp. 672-680
    • Gao, F.1    Sun, H.2    Xu, Q.3    Tan, J.4    Yan, J.5    Wang, Q.6
  • 7
    • 84893689981 scopus 로고    scopus 로고
    • Seasonal variations of food sources in Apostichopus japonicus indicated by fatty acid biomarkers analysis
    • Gao, F., Xu, Q., and Yang, H., 2010b. Seasonal variations of food sources in Apostichopus japonicus indicated by fatty acid biomarkers analysis. Journal of Fisheries of China, 34: 760-767 (in Chinese with English abstract).
    • (2010) Journal of Fisheries of China , vol.34 , pp. 760-767
    • Gao, F.1    Xu, Q.2    Yang, H.3
  • 8
    • 0020377184 scopus 로고
    • Patterns of feeding and activity in deposit-feeding holothurians and echinoids (Echinodermata) from a shallow black-reef lagoon, Discovery Bay, Jamaica
    • Hammond, L. S., 1982. Patterns of feeding and activity in deposit-feeding holothurians and echinoids (Echinodermata) from a shallow black-reef lagoon, Discovery Bay, Jamaica. Bulletin of Marine Science, 32(2): 549-571.
    • (1982) Bulletin of Marine Science , vol.32 , Issue.2 , pp. 549-571
    • Hammond, L.S.1
  • 9
    • 0007945760 scopus 로고
    • Feeding biology of Stichopus tremulus, a deposit feeding holothurian
    • Hauksson, E., 1979. Feeding biology of Stichopus tremulus, a deposit feeding holothurian. Sarsia, 64: 155-160.
    • (1979) Sarsia , vol.64 , pp. 155-160
    • Hauksson, E.1
  • 11
    • 83655167428 scopus 로고    scopus 로고
    • Seasonal variations in the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.)
    • Hovda, M. B., Fontanillas, R., McGurk, C., Obach, A., and Rosnes, J. T., 2012. Seasonal variations in the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.). Aquaculture Research, 43(1): 154-159.
    • (2012) Aquaculture Research , vol.43 , Issue.1 , pp. 154-159
    • Hovda, M.B.1    Fontanillas, R.2    McGurk, C.3    Obach, A.4    Rosnes, J.T.5
  • 12
    • 35748972353 scopus 로고    scopus 로고
    • Molecular characterization of the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.)
    • Hovda, M. B., Lunestad, B. T., Fontanillas, R., and Rosnes, J. T., 2007. Molecular characterization of the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.). Aquaculture, 272: 581-588.
    • (2007) Aquaculture , vol.272 , pp. 581-588
    • Hovda, M.B.1    Lunestad, B.T.2    Fontanillas, R.3    Rosnes, J.T.4
  • 13
    • 34250639282 scopus 로고    scopus 로고
    • Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss)
    • Kim, D. H., Brunt, J., and Austin, B., 2007. Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss). Journal of Applied Microbiology, 102: 1654-1664.
    • (2007) Journal of Applied Microbiology , vol.102 , pp. 1654-1664
    • Kim, D.H.1    Brunt, J.2    Austin, B.3
  • 14
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Kuske, C. R., Barns, S. M., and Busch, J. D., 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Applied and Environmental Microbiology, 63(9): 3614-3621.
    • (1997) Applied and Environmental Microbiology , vol.63 , Issue.9 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 15
    • 0036560652 scopus 로고    scopus 로고
    • Genetic diversity of attached bacteria in the hindgut of the deposit-feeding shrimp Neotrypaea (formerly Callianassa) californiensis (Decapoda: Thalassinidae)
    • Lau, W., Jumars, P., and Armbrust, E., 2002. Genetic diversity of attached bacteria in the hindgut of the deposit-feeding shrimp Neotrypaea (formerly Callianassa) californiensis (Decapoda: Thalassinidae). Microbial Ecology, 43: 455-466.
    • (2002) Microbial Ecology , vol.43 , pp. 455-466
    • Lau, W.1    Jumars, P.2    Armbrust, E.3
  • 17
    • 46149112581 scopus 로고    scopus 로고
    • Vertical distribution of bacterial and archaeal communities along discrete layers of a deep-sea cold sediment sample at the East Pacific Rise (∼13°N)
    • Li, Y., Li, F., Zhang, X., Qin, S., Zeng, Z., Dang, H., and Qin, Y., 2008. Vertical distribution of bacterial and archaeal communities along discrete layers of a deep-sea cold sediment sample at the East Pacific Rise (∼13°N). Extremophiles, 12: 573-585.
    • (2008) Extremophiles , vol.12 , pp. 573-585
    • Li, Y.1    Li, F.2    Zhang, X.3    Qin, S.4    Zeng, Z.5    Dang, H.6    Qin, Y.7
  • 18
    • 79952453091 scopus 로고    scopus 로고
    • Analysis of the microbial community and geochemistry of a sediment core from Great Slave Lake, Canada
    • Lim, J., Woodward, J., Tulaczyk, S., Christoffersen, P., and Cummings, S. P., 2011. Analysis of the microbial community and geochemistry of a sediment core from Great Slave Lake, Canada. Antonie van Leeuwenhoek, 99: 423-430.
    • (2011) Antonie Van Leeuwenhoek , vol.99 , pp. 423-430
    • Lim, J.1    Woodward, J.2    Tulaczyk, S.3    Christoffersen, P.4    Cummings, S.P.5
  • 19
    • 42949091794 scopus 로고    scopus 로고
    • Bacterial community composition of the Yellow Sea cold water mass studied by PCR-denaturing gradient gel electrophoresis
    • Liu, M., Zhu, K., Li, H., Zhang, T., and Xiao, T., 2008. Bacterial community composition of the Yellow Sea cold water mass studied by PCR-denaturing gradient gel electrophoresis. Environmental Science, 29: 1082-1091 (in Chinese with English abstract).
    • (2008) Environmental Science , vol.29 , pp. 1082-1091
    • Liu, M.1    Zhu, K.2    Li, H.3    Zhang, T.4    Xiao, T.5
  • 21
    • 70349358223 scopus 로고    scopus 로고
    • PCR-DGGE analysis of bacterial community composition in brackish water Litopenaeus vannamei culture system
    • Luo, P., Hu, C., Xie, Z., Zhang, L., Ren, C., and Xu, Y., 2006. PCR-DGGE analysis of bacterial community composition in brackish water Litopenaeus vannamei culture system. Journal of Tropical Oceanography, 25(2): 49-53 (in Chinese with English abstract).
    • (2006) Journal of Tropical Oceanography , vol.25 , Issue.2 , pp. 49-53
    • Luo, P.1    Hu, C.2    Xie, Z.3    Zhang, L.4    Ren, C.5    Xu, Y.6
  • 22
    • 84899432759 scopus 로고    scopus 로고
    • PCR-DGGE analysis of bacterial communities in marine Litopenaeus vannamei culture system
    • Luo, P., Hu, C., Zhang, L., and Ren, C., 2009. PCR-DGGE analysis of bacterial communities in marine Litopenaeus vannamei culture system. Journal of Fishery Sciences of China, 16(1): 31-38 (in Chinese with English abstract).
    • (2009) Journal of Fishery Sciences of China , vol.16 , Issue.1 , pp. 31-38
    • Luo, P.1    Hu, C.2    Zhang, L.3    Ren, C.4
  • 23
    • 15244358133 scopus 로고    scopus 로고
    • A population survey of members of the phylum Bacteroidetes isolated from salt marsh sediments along the East Coast of the United States
    • Lydell, C., Dowell, L., Sikaroodi, M., Gillevet, P., and Emerson, D., 2004. A population survey of members of the phylum Bacteroidetes isolated from salt marsh sediments along the East Coast of the United States. Microbial Ecology, 48: 263-273.
    • (2004) Microbial Ecology , vol.48 , pp. 263-273
    • Lydell, C.1    Dowell, L.2    Sikaroodi, M.3    Gillevet, P.4    Emerson, D.5
  • 24
    • 84899462397 scopus 로고    scopus 로고
    • Genetic diversity of bacterial from prawn farm sediment
    • Ma, Y., Qian, L., and Wang, Y., 2009. Genetic diversity of bacterial from prawn farm sediment. Natural Science Journal of Hainan University, 27: 369-374 (in Chinese with English abstract).
    • (2009) Natural Science Journal of Hainan University , vol.27 , pp. 369-374
    • Ma, Y.1    Qian, L.2    Wang, Y.3
  • 26
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E. C., and Uitterlinden, A. G., 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology, 59: 695-700.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 27
    • 0036367246 scopus 로고    scopus 로고
    • Bacterial flora from the gut of the wild and cultured banana prawn, Penaeus merguiensis
    • Oxley, A. P. A., Shipton, W., Owens, L., and McKay, D., 2002. Bacterial flora from the gut of the wild and cultured banana prawn, Penaeus merguiensis. Journal of Applied Microbiology, 93: 214-223.
    • (2002) Journal of Applied Microbiology , vol.93 , pp. 214-223
    • Oxley, A.P.A.1    Shipton, W.2    Owens, L.3    McKay, D.4
  • 28
    • 84865726672 scopus 로고    scopus 로고
    • Enzyme-producing bacteria isolated from fish gut: A review
    • Ray, A. K., Ghosh, K., and Ringø, E., 2012. Enzyme-producing bacteria isolated from fish gut: A review. Aquaculture Nutrition, DOI: 10. 1111/j. 1365-2095. 2012. 00943. x.
    • (2012) Aquaculture Nutrition
    • Ray, A.K.1    Ghosh, K.2    Ringø, E.3
  • 29
    • 82555187978 scopus 로고    scopus 로고
    • Organically selective movement and deposit-feeding in juvenile sea cucumber, Australostichopus mollis determined in situ and in the laboratory
    • Slater, M. J., Jeffs, A. G., and Sewell, M. A., 2011. Organically selective movement and deposit-feeding in juvenile sea cucumber, Australostichopus mollis determined in situ and in the laboratory. Journal of Experimental Marine Biology and Ecology, 409(1-2): 315-323.
    • (2011) Journal of Experimental Marine Biology and Ecology , vol.409 , Issue.1-2 , pp. 315-323
    • Slater, M.J.1    Jeffs, A.G.2    Sewell, M.A.3
  • 30
    • 0002321128 scopus 로고
    • Echinoderm fisheries of the world: A review
    • B. F. Keegan, B. D. S. O'Connor (Eds.), Echinodermata, Rotterdam: AA Balkema Publishers
    • Sloan, N. A., 1984. Echinoderm fisheries of the world: A review. In: Proceedings of the Fifth International Echinoderm Conference. Keegan, B. F., and O'Connor, B. D. S., eds., AA Balkema Publishers, Echinodermata, Rotterdam, 109-124.
    • (1984) Proceedings of the Fifth International Echinoderm Conference , pp. 109-124
    • Sloan, N.A.1
  • 31
    • 33645256239 scopus 로고
    • Beijing: China Agriculture Publishing House
    • Sui, X., 1988. Culture and Enhance of Sea Cucumber. China Agriculture Publishing House, Beijing, p33.
    • (1988) Culture and Enhance of Sea Cucumber , pp. 33
    • Sui, X.1
  • 32
    • 0012747402 scopus 로고
    • The microbial composition of Stichopus japonicus and its physiological property
    • Sun, Y., and Chen, D., 1989. The microbial composition of Stichopus japonicus and its physiological property. Oceanologia et Limnologia Sinica, 20: 300-307 (in Chinese with English abstract).
    • (1989) Oceanologia Et Limnologia Sinica , vol.20 , pp. 300-307
    • Sun, Y.1    Chen, D.2
  • 33
    • 46749145764 scopus 로고    scopus 로고
    • The immediate environment during postnatal development has long-term impact on gut community structure in pigs
    • Thompson, C. L., Wang, B., and Holmes, A. J., 2008. The immediate environment during postnatal development has long-term impact on gut community structure in pigs. The ISME Journal, 2: 739-748.
    • (2008) The ISME Journal , vol.2 , pp. 739-748
    • Thompson, C.L.1    Wang, B.2    Holmes, A.J.3
  • 34
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J., 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22(22): 4673-4680.
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 35
    • 33847027667 scopus 로고    scopus 로고
    • Bacterial communities in Great Barrier Reef calcareous sediments: Contrasting 16S rDNA libraries from nearshore and outer shelf reefs
    • Uthicke, S., and McGuire, K., 2007. Bacterial communities in Great Barrier Reef calcareous sediments: Contrasting 16S rDNA libraries from nearshore and outer shelf reefs. Estuarine Coastal and Shelf Science, 72: 188-200.
    • (2007) Estuarine Coastal and Shelf Science , vol.72 , pp. 188-200
    • Uthicke, S.1    McGuire, K.2
  • 39
    • 77952144771 scopus 로고    scopus 로고
    • Analyses on intestinal flora of cultured shrimp and water microbial flora
    • Yang, Y., Li, Z., Lin, L., and Guo, Z., 2006. Analyses on intestinal flora of cultured shrimp and water microbial flora. Journal of Tropical Oceanography. 25: 53-56 (in Chinese with English abstract).
    • (2006) Journal of Tropical Oceanography , vol.25 , pp. 53-56
    • Yang, Y.1    Li, Z.2    Lin, L.3    Guo, Z.4
  • 40
    • 4143101632 scopus 로고    scopus 로고
    • Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis
    • Yu, Z., and Morrison, M., 2004. Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Applied and Environmental Microbiology, 70(8): 4800-4806.
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.8 , pp. 4800-4806
    • Yu, Z.1    Morrison, M.2
  • 41
    • 33645252784 scopus 로고
    • Preliminary analysis on the feeding habit of Apostichopus japonicus in the rocky coastwaters off Lingshan Island
    • Zhang, B., Sun, D., and Wu, Y., 1995. Preliminary analysis on the feeding habit of Apostichopus japonicus in the rocky coastwaters off Lingshan Island. Marine Science, 3: 11-13 (in Chinese with English abstract).
    • (1995) Marine Science , vol.3 , pp. 11-13
    • Zhang, B.1    Sun, D.2    Wu, Y.3
  • 43
    • 79952634123 scopus 로고    scopus 로고
    • DGGE technique and its application in study on microbial diversity in marine environment
    • Zhang, Z., Wang, S., and Cao, Y., 2008. DGGE technique and its application in study on microbial diversity in marine environment. Marine Environmental Science, 27: 297-300 (in Chinese with English abstract).
    • (2008) Marine Environmental Science , vol.27 , pp. 297-300
    • Zhang, Z.1    Wang, S.2    Cao, Y.3
  • 44
    • 57149144363 scopus 로고    scopus 로고
    • Molecular characterization of the autochthonous microbiota in the gastrointestinal tract of adult yellow grouper (Epinephelus awoara) cultured in cages
    • Zhou, Z., Liu, Y., Shi, P., He, S., Yao, B., and Ringø, E., 2009. Molecular characterization of the autochthonous microbiota in the gastrointestinal tract of adult yellow grouper (Epinephelus awoara) cultured in cages. Aquaculture, 286: 184-189.
    • (2009) Aquaculture , vol.286 , pp. 184-189
    • Zhou, Z.1    Liu, Y.2    Shi, P.3    He, S.4    Yao, B.5    Ringø, E.6


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