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Volumn 38, Issue 4, 2014, Pages 310-324

Bayesian latent variable collapsing model for detecting rare variant interaction effect in twin study

Author keywords

Bayesian collapsing model; Genetic association; LDL C; Rare variant; Twin study

Indexed keywords

LOW DENSITY LIPOPROTEIN CHOLESTEROL;

EID: 84899097486     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.21804     Document Type: Article
Times cited : (1)

References (51)
  • 1
    • 84883698565 scopus 로고    scopus 로고
    • Re-sequencing of the APOAI promoter region and the genetic association of the -75G > A polymorphism with increased cholesterol and low density lipoprotein levels among a sample of the Kuwaiti population
    • Al-Bustan SA, Al-Serri AE, Annice BG, Alnaqeeb MA, Ebrahim GA. 2013. Re-sequencing of the APOAI promoter region and the genetic association of the -75G > A polymorphism with increased cholesterol and low density lipoprotein levels among a sample of the Kuwaiti population. BMC Med Genet 14:90.
    • (2013) BMC Med Genet , vol.14 , pp. 90
    • Al-Bustan, S.A.1    Al-Serri, A.E.2    Annice, B.G.3    Alnaqeeb, M.A.4    Ebrahim, G.A.5
  • 2
    • 26844452938 scopus 로고    scopus 로고
    • Practical issues in implementing and understanding Bayesian ideal point estimation
    • Bafumi J, Gelman A, Park DK, Kaplan N. 2005. Practical issues in implementing and understanding Bayesian ideal point estimation. Polit Anal 13:171-187.
    • (2005) Polit Anal , vol.13 , pp. 171-187
    • Bafumi, J.1    Gelman, A.2    Park, D.K.3    Kaplan, N.4
  • 3
    • 80054728031 scopus 로고    scopus 로고
    • Comparison of statistical tests for disease association with rare variants
    • Basu S, Pan W. 2011. Comparison of statistical tests for disease association with rare variants. Genet Epidemiol 35:606-619.
    • (2011) Genet Epidemiol , vol.35 , pp. 606-619
    • Basu, S.1    Pan, W.2
  • 4
    • 1342332173 scopus 로고    scopus 로고
    • The common variants/multiple disease hypothesis of common complex genetic disorders
    • Becker KG. 2004. The common variants/multiple disease hypothesis of common complex genetic disorders. Med Hypotheses 62:309-317.
    • (2004) Med Hypotheses , vol.62 , pp. 309-317
    • Becker, K.G.1
  • 6
    • 1542723754 scopus 로고    scopus 로고
    • Genome-wide linkage scan reveals multiple susceptibility loci influencing lipid and lipoprotein levels in the Quebec Family Study
    • Bossé Y, Chagnon YC, Després J-P, Rice T, Rao DC, Bouchard C, Pérusse L, Vohl M-C. 2004. Genome-wide linkage scan reveals multiple susceptibility loci influencing lipid and lipoprotein levels in the Quebec Family Study. J Lipid Res 45:419-426.
    • (2004) J Lipid Res , vol.45 , pp. 419-426
    • Bossé, Y.1    Chagnon, Y.C.2    Després, J.-P.3    Rice, T.4    Rao, D.C.5    Bouchard, C.6    Pérusse, L.7    Vohl, M.-C.8
  • 7
    • 77954555145 scopus 로고    scopus 로고
    • Significance test and genome selection in Bayesian shrinkage analysis
    • doi:10.1155/2010/893206.
    • Che X, Xu S. 2010. Significance test and genome selection in Bayesian shrinkage analysis. Int J Plant Genomics 2010:893206. doi:10.1155/2010/893206.
    • (2010) Int J Plant Genomics , vol.2010 , pp. 893206
    • Che, X.1    Xu, S.2
  • 9
    • 62549085618 scopus 로고    scopus 로고
    • Human genetic variation and its contribution to complex traits
    • Frazer KA, Murray SS, Schork NJ, Topol EJ. 2009. Human genetic variation and its contribution to complex traits. Nat Rev Genet 10:241-251.
    • (2009) Nat Rev Genet , vol.10 , pp. 241-251
    • Frazer, K.A.1    Murray, S.S.2    Schork, N.J.3    Topol, E.J.4
  • 12
    • 58849139595 scopus 로고    scopus 로고
    • Genetic interactions between transcription factors cause natural variation in yeast
    • Gerke J, Lorenz K, Cohen B. 2009. Genetic interactions between transcription factors cause natural variation in yeast. Science 323:498-501.
    • (2009) Science , vol.323 , pp. 498-501
    • Gerke, J.1    Lorenz, K.2    Cohen, B.3
  • 13
    • 84855925920 scopus 로고    scopus 로고
    • Rare and common variants: twenty arguments
    • Gibson G. 2012. Rare and common variants: twenty arguments. Nat Rev Genet 13:135-145.
    • (2012) Nat Rev Genet , vol.13 , pp. 135-145
    • Gibson, G.1
  • 14
    • 84950429964 scopus 로고
    • The Bayes/non-Bayes compromise: a brief review
    • Good IJ. 1992. The Bayes/non-Bayes compromise: a brief review. J Am Stat Assoc 87(419):597-606.
    • (1992) J Am Stat Assoc , vol.87 , Issue.419 , pp. 597-606
    • Good, I.J.1
  • 15
    • 77951028197 scopus 로고    scopus 로고
    • A data-adaptive sum test for disease association with multiple common or rare variants
    • Han F, Pan W. 2010. A data-adaptive sum test for disease association with multiple common or rare variants. Hum Hered 70:42-54.
    • (2010) Hum Hered , vol.70 , pp. 42-54
    • Han, F.1    Pan, W.2
  • 17
    • 78149479773 scopus 로고    scopus 로고
    • Comprehensive approach to analyzing rare genetic variants
    • Hoffmann TJ, Marini NJ, Witte JS. 2010. Comprehensive approach to analyzing rare genetic variants. PloS One 5:e13584.
    • (2010) PloS One , vol.5
    • Hoffmann, T.J.1    Marini, N.J.2    Witte, J.S.3
  • 18
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • Howie BN, Donnelly P, Marchini J. 2009. A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet 5:e1000529.
    • (2009) PLoS Genet , vol.5
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 19
    • 49449089878 scopus 로고    scopus 로고
    • Effect of formal statistical significance on the credibility of observational associations
    • Ioannidis JPA. 2008. Effect of formal statistical significance on the credibility of observational associations. Am J Epidemiol 168:374-383.
    • (2008) Am J Epidemiol , vol.168 , pp. 374-383
    • Ioannidis, J.P.A.1
  • 20
    • 36549036104 scopus 로고    scopus 로고
    • The genetic basis of complex traits: rare variants or "common gene, common disease"?
    • Iyengar SK, Elston RC. 2007. The genetic basis of complex traits: rare variants or "common gene, common disease"? Methods Mol Biol Clifton NJ 376:71-84.
    • (2007) Methods Mol Biol Clifton NJ , vol.376 , pp. 71-84
    • Iyengar, S.K.1    Elston, R.C.2
  • 21
    • 0003414592 scopus 로고    scopus 로고
    • 3rd ed. New York, NY: Oxford University Press.
    • Jeffreys H. 1998. Theory of Probability, 3rd ed. New York, NY: Oxford University Press.
    • (1998) Theory of Probability
    • Jeffreys, H.1
  • 24
    • 84859171835 scopus 로고    scopus 로고
    • The empirical power of rare variant association methods: results from sanger sequencing in 1,998 individuals
    • Ladouceur M, Dastani Z, Aulchenko YS, Greenwood CMT, Richards JB. 2012. The empirical power of rare variant association methods: results from sanger sequencing in 1, 998 individuals. PLoS Genet 8:e1002496.
    • (2012) PLoS Genet , vol.8
    • Ladouceur, M.1    Dastani, Z.2    Aulchenko, Y.S.3    Greenwood, C.M.T.4    Richards, J.B.5
  • 26
    • 50949095168 scopus 로고    scopus 로고
    • Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data
    • Li B, Leal SM. 2008. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. Am J Hum Genet 83: 311-321.
    • (2008) Am J Hum Genet , vol.83 , pp. 311-321
    • Li, B.1    Leal, S.M.2
  • 28
    • 78449245227 scopus 로고    scopus 로고
    • A novel adaptive method for the analysis of next-generation sequencing data to detect complex trait associations with rare variants due to gene main effects and interactions
    • Liu DJ, Leal SM. 2010. A novel adaptive method for the analysis of next-generation sequencing data to detect complex trait associations with rare variants due to gene main effects and interactions. PLoS Genet 6:e1001156.
    • (2010) PLoS Genet , vol.6
    • Liu, D.J.1    Leal, S.M.2
  • 29
    • 61449168010 scopus 로고    scopus 로고
    • A groupwise association test for rare mutations using a weighted sum statistic
    • Madsen BE, Browning SR. 2009. A groupwise association test for rare mutations using a weighted sum statistic. PLoS Genet 5:e1000384.
    • (2009) PLoS Genet , vol.5
    • Madsen, B.E.1    Browning, S.R.2
  • 31
    • 84857641821 scopus 로고    scopus 로고
    • Differential confounding of rare and common variants in spatially structured populations
    • Mathieson I, McVean G. 2012. Differential confounding of rare and common variants in spatially structured populations. Nat Genet 44:243-246.
    • (2012) Nat Genet , vol.44 , pp. 243-246
    • Mathieson, I.1    McVean, G.2
  • 33
    • 78149257657 scopus 로고    scopus 로고
    • SNP-SNP interactions dominate the genetic architecture of candidate genes associated with left ventricular mass in african-americans of the GENOA study
    • Meyers KJ, Chu J, Mosley TH, Kardia SL. 2010. SNP-SNP interactions dominate the genetic architecture of candidate genes associated with left ventricular mass in african-americans of the GENOA study. BMC Med Genet 11:160.
    • (2010) BMC Med Genet , vol.11 , pp. 160
    • Meyers, K.J.1    Chu, J.2    Mosley, T.H.3    Kardia, S.L.4
  • 34
    • 83755224811 scopus 로고    scopus 로고
    • Bayes factor approaches for testing interval null hypotheses
    • Morey RD, Rouder JN. 2011. Bayes factor approaches for testing interval null hypotheses. Psychol Methods 16:406-419.
    • (2011) Psychol Methods , vol.16 , pp. 406-419
    • Morey, R.D.1    Rouder, J.N.2
  • 35
    • 76649136928 scopus 로고    scopus 로고
    • An evaluation of statistical approaches to rare variant analysis in genetic association studies
    • Morris AP, Zeggini E. 2010. An evaluation of statistical approaches to rare variant analysis in genetic association studies. Genet Epidemiol 34:188-193.
    • (2010) Genet Epidemiol , vol.34 , pp. 188-193
    • Morris, A.P.1    Zeggini, E.2
  • 41
    • 80054758152 scopus 로고    scopus 로고
    • Incorporating model uncertainty in detecting rare variants: the Bayesian risk index
    • Quintana MA, Berstein JL, Thomas DC, Conti DV. 2011. Incorporating model uncertainty in detecting rare variants: the Bayesian risk index. Genet Epidemiol 35:638-649.
    • (2011) Genet Epidemiol , vol.35 , pp. 638-649
    • Quintana, M.A.1    Berstein, J.L.2    Thomas, D.C.3    Conti, D.V.4
  • 42
    • 0001153986 scopus 로고
    • Simulation of truncated normal variables
    • Robert CP. 1995. Simulation of truncated normal variables. Stat Comput 5:121-125.
    • (1995) Stat Comput , vol.5 , pp. 121-125
    • Robert, C.P.1
  • 43
    • 75749107854 scopus 로고    scopus 로고
    • Common disease multiple rare (and distant) variants
    • Robinson R. 2010. Common disease multiple rare (and distant) variants. PLoS Biol 8:e1000293.
    • (2010) PLoS Biol , vol.8
    • Robinson, R.1
  • 44
    • 70349303959 scopus 로고    scopus 로고
    • Bayesian statistical methods for genetic association studies
    • Stephens M, Balding DJ. 2009. Bayesian statistical methods for genetic association studies. Nat Rev Genet 10:681-690.
    • (2009) Nat Rev Genet , vol.10 , pp. 681-690
    • Stephens, M.1    Balding, D.J.2
  • 49
    • 80051499915 scopus 로고    scopus 로고
    • Rare-variant association testing for sequencing data with the sequence kernel association test
    • Wu MC, Lee S, Cai T, Li Y, Boehnke M, Lin X. 2011. Rare-variant association testing for sequencing data with the sequence kernel association test. Am J Hum Genet 89:82-93.
    • (2011) Am J Hum Genet , vol.89 , pp. 82-93
    • Wu, M.C.1    Lee, S.2    Cai, T.3    Li, Y.4    Boehnke, M.5    Lin, X.6
  • 50
    • 84855295482 scopus 로고    scopus 로고
    • Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects
    • Yi N, Liu N, Zhi D, Li J. 2011. Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects. PLoS Genet 7:e1002382.
    • (2011) PLoS Genet , vol.7
    • Yi, N.1    Liu, N.2    Zhi, D.3    Li, J.4
  • 51
    • 78650363812 scopus 로고    scopus 로고
    • Bayesian analysis of rare variants in genetic association studies
    • Yi N, Zhi D. 2011. Bayesian analysis of rare variants in genetic association studies. Genet Epidemiol 35:57-69.
    • (2011) Genet Epidemiol , vol.35 , pp. 57-69
    • Yi, N.1    Zhi, D.2


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