메뉴 건너뛰기




Volumn 8, Issue 10, 2013, Pages

Genome-wide estimates of coancestry and inbreeding in a closed herd of ancient iberian pigs

Author keywords

[No Author keywords available]

Indexed keywords

ANCIENT IBERIAN PIG; ARTICLE; CONSANGUINITY; CONTROLLED STUDY; FEMALE; GENEALOGY; GENETIC STRAIN; GENETIC VARIABILITY; GENOME; GENOTYPING TECHNIQUE; HERD; INBREEDING; MALE; MICROSATELLITE MARKER; NONHUMAN; PEDIGREE; PIG BREED; POPULATION SIZE; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES EXTINCTION; ANIMAL; GENETIC ASSOCIATION; GENETICS; GENOTYPE; POPULATION DENSITY; POPULATION GENETICS; PROCEDURES; SWINE;

EID: 84898924245     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0078314     Document Type: Article
Times cited : (38)

References (32)
  • 1
    • 33644485183 scopus 로고    scopus 로고
    • Nottingham, UK. Managing genetic resources in commercial breeding populations
    • Simm G, Villanueva B, Sinclair KD, Townsend S, editors. Nottingham University Press
    • Villanueva B, Pong-Wong R, Woolliams JA, Avendano S (2004) Nottingham, UK. Managing genetic resources in commercial breeding populations. In: Simm G, Villanueva B, Sinclair KD, Townsend S, editors. Farm Animal Genetic Resources. Nottingham University Press, pp. 113-132
    • (2004) Farm Animal Genetic Resources , pp. 113-132
    • Villanueva, B.1    Pong-Wong, R.2    Woolliams, J.A.3    Avendano, S.4
  • 2
    • 84856373123 scopus 로고    scopus 로고
    • Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof
    • Esteve-Codina A, Kofler R, Himmelbauer H, Ferretti L, Vivancos AP et al (2011) Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof. Heredity 107: 256-264
    • (2011) Heredity , vol.107 , pp. 256-264
    • Esteve-Codina, A.1    Kofler, R.2    Himmelbauer, H.3    Ferretti, L.4    Vivancos, A.P.5
  • 3
    • 0346997315 scopus 로고    scopus 로고
    • Sustained utilization of the Iberian pig breed
    • Lopez-Bote C (1998) Sustained utilization of the Iberian pig breed. Meat Sci 1: 17-27
    • (1998) Meat Sci , vol.1 , pp. 17-27
    • Lopez-Bote, C.1
  • 4
    • 0034515464 scopus 로고    scopus 로고
    • Genealogical analysis of a closed herd of black hairless Iberian Pigs
    • Toro MA, Rodriganez J, Silio L, Rodr?guez MC (2000) Genealogical analysis of a closed herd of black hairless Iberian Pigs. Conserv Biol 14: 1843-1851
    • (2000) Conserv Biol , vol.14 , pp. 1843-1851
    • Toro, M.A.1    Rodriganez, J.2    Silio, L.3    Rodrguez, M.C.4
  • 5
    • 0036715919 scopus 로고    scopus 로고
    • Inbreeding effects on the parameters of the growth function in three strains of Iberian pigs
    • Fernandez A, Rodriganez J, Toro MA, Rodr?guez MC, Silio L (2002) Inbreeding effects on the parameters of the growth function in three strains of Iberian pigs. J Anim Sci 80: 2267-2275
    • (2002) J Anim Sci , vol.80 , pp. 2267-2275
    • Fernandez, A.1    Rodriganez, J.2    Toro, M.A.3    Rodrguez, M.C.4    Silio, L.5
  • 6
    • 3242816283 scopus 로고    scopus 로고
    • Analysis of genetic diversity and conservation priorities in Iberian pigs based on microsatellite markers
    • Fabuel EC, Barragan C, Silio L, Rodrguez MC, Toro MA (2004) Analysis of genetic diversity and conservation priorities in Iberian pigs based on microsatellite markers. Heredity 93: 104-133
    • (2004) Heredity , vol.93 , pp. 104-133
    • Fabuel, E.C.1    Barragan, C.2    Silio, L.3    Rodrguez, M.C.4    Toro, M.A.5
  • 7
    • 0036775942 scopus 로고    scopus 로고
    • QTL mapping for growth and carcass traits in an Iberian by Landrace pig intercross: Additive, dominant and epistatic effects
    • Varona L, O vilo C, Clop A, Noguera JL, Perez-Enciso M et al. (2002) QTL mapping for growth and carcass traits in an Iberian by Landrace pig intercross: additive, dominant and epistatic effects. Genet Res 80: 145-154
    • (2002) Genet Res , vol.80 , pp. 145-154
    • Varona Ovilo, L.C.1    Clop, A.2    Noguera, J.L.3    Perez-Enciso, M.4
  • 8
    • 33744490520 scopus 로고    scopus 로고
    • QTL mapping for teat number in an Iberian by Meishan pig intercross
    • Rodr?guez C, Tomas A, Alves E, Ram?rez O, Arque M, et al. (2005) QTL mapping for teat number in an Iberian by Meishan pig intercross. Anim Genet 36: 490-496
    • (2005) Anim Genet , vol.36 , pp. 490-496
    • Rodrguez, C.1    Tomas, A.2    Alves, E.3    Ramrez, O.4    Arque, M.5
  • 9
    • 84882652578 scopus 로고    scopus 로고
    • Genome-wide association study for intramuscular fatty acid composition in an Iberian x Landrace cross
    • Ramayo-Caldas Y, Mercade A, Castello , Yang B, Rodr?guez C, et al. (2012). Genome-wide association study for intramuscular fatty acid composition in an Iberian x Landrace cross. J Anim Sci 90: 2883-2893
    • (2012) J Anim Sci , vol.90 , pp. 2883-2893
    • Ramayo-Caldas, Y.1    Mercade, A.2    Castello Yang, B.3    Rodrguez, C.4
  • 11
    • 84869003221 scopus 로고    scopus 로고
    • Analyses of pig genomes provide insight into porcine demography and evolution
    • Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, et al. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature 491: 393-398
    • (2012) Nature , vol.491 , pp. 393-398
    • Groenen, M.A.1    Archibald, A.L.2    Uenishi, H.3    Tuggle, C.K.4    Takeuchi, Y.5
  • 12
    • 23344443984 scopus 로고    scopus 로고
    • Efficiency of the use of pedigree and molecular marker information in conservation programs
    • Fernandez J, Villanueva B, Pong-Wong R, Toro MA (2005) Efficiency of the use of pedigree and molecular marker information in conservation programs. Genetics 170: 1313-1321
    • (2005) Genetics , vol.170 , pp. 1313-1321
    • Fernandez, J.1    Villanueva, B.2    Pong-Wong, R.3    Toro, M.A.4
  • 15
    • 80455127242 scopus 로고    scopus 로고
    • A note on the rationale for estimating genealogical coancestry from molecular markers
    • Toro MA, Garc?a-Cortes LA, Legarra A (2011) A note on the rationale for estimating genealogical coancestry from molecular markers. Gen Sel Evol 43: 27
    • (2011) Gen Sel Evol , vol.43 , pp. 27
    • Toro, M.A.1    Garca-Cortes, L.A.2    Legarra, A.3
  • 17
    • 80755169307 scopus 로고    scopus 로고
    • Using genome-wide information to minimize the loss of diversity in conservation programmes
    • de Cara MA, Fernandez J, Toro MA, Villanueva B (2011) Using genome-wide information to minimize the loss of diversity in conservation programmes. J Anim Breed Genet 128: 456-464
    • (2011) J Anim Breed Genet , vol.128 , pp. 456-464
    • De Cara, M.A.1    Fernandez, J.2    Toro, M.A.3    Villanueva, B.4
  • 18
    • 84865862714 scopus 로고    scopus 로고
    • Molecular tools and analytical approaches for the characterization of farm animal genetic diversity
    • Lenstra JA, Groeneveld LF, Eding H, Kantanen J, Williams JL, et al. (2012) Molecular tools and analytical approaches for the characterization of farm animal genetic diversity. Anim Genet 43: 483-502
    • (2012) Anim Genet , vol.43 , pp. 483-502
    • Lenstra, J.A.1    Groeneveld, L.F.2    Eding, H.3    Kantanen, J.4    Williams, J.L.5
  • 20
    • 0027029808 scopus 로고
    • Computing inbreeding coefficients in large populations
    • Meuwissen T, Z Luo (1992) Computing inbreeding coefficients in large populations. Genet Sel Evol 24: 305-313
    • (1992) Genet Sel Evol , vol.24 , pp. 305-313
    • Meuwissen, T.1    Luo, Z.2
  • 21
    • 0002260099 scopus 로고
    • Variance of gene frequencies
    • Cockerham CC (1969) Variance of gene frequencies. Evolution 23: 72-84
    • (1969) Evolution , vol.23 , pp. 72-84
    • Cockerham, C.C.1
  • 22
    • 34347346021 scopus 로고    scopus 로고
    • Analysis of inbreeding depression in the first litter size of mice in a long-Term selection experiment with respect to the age of the inbreeding
    • Hinrichs D, Meuwissen T, Odegard J, Holt M, Vangen O et al (2007) Analysis of inbreeding depression in the first litter size of mice in a long-Term selection experiment with respect to the age of the inbreeding. Heredity 99: 81-88
    • (2007) Heredity , vol.99 , pp. 81-88
    • Hinrichs, D.1    Meuwissen, T.2    Odegard, J.3    Holt, M.4    Vangen, O.5
  • 23
    • 0036377823 scopus 로고    scopus 로고
    • Analysis of genetic diversity for the management of conserved subdivided populations
    • Caballero A, Toro MA (2002) Analysis of genetic diversity for the management of conserved subdivided populations. Conserv Genet 3: 289-299
    • (2002) Conserv Genet , vol.3 , pp. 289-299
    • Caballero, A.1    Toro, M.A.2
  • 24
    • 8144228651 scopus 로고    scopus 로고
    • Measuring inbreeding depression in the wild: The old ways are the best
    • Pemberton J (2004) Measuring inbreeding depression in the wild: the old ways are the best. Trends Ecol Evol 19: 613-615
    • (2004) Trends Ecol Evol , vol.19 , pp. 613-615
    • Pemberton, J.1
  • 25
    • 2342542150 scopus 로고    scopus 로고
    • Understanding the relationship between the inbreeding coefficient and multilocus heterozygosity: Theoretical expectations and empirical data
    • Slate J, David P, Dodds KG, Veenvliet BA, Glass BC et al (2004) Understanding the relationship between the inbreeding coefficient and multilocus heterozygosity: theoretical expectations and empirical data. Heredity 93: 255-265
    • (2004) Heredity , vol.93 , pp. 255-265
    • Slate, J.1    David, P.2    Dodds, K.G.3    Veenvliet, B.A.4    Glass, B.C.5
  • 26
    • 0028674867 scopus 로고
    • Developments in the prediction of effective population size
    • Caballero A (1994) Developments in the prediction of effective population size. Heredity 73: 657-679
    • (1994) Heredity , vol.73 , pp. 657-679
    • Caballero, A.1
  • 27
    • 58149511951 scopus 로고    scopus 로고
    • Molecular characterization of breeds and its use in conservation
    • Toro MA, Fernandez J, Caballero A (2009) Molecular characterization of breeds and its use in conservation. Livest Sci 120: 174-195
    • (2009) Livest Sci , vol.120 , pp. 174-195
    • Toro, M.A.1    Fernandez, J.2    Caballero, A.3
  • 28
    • 77949778188 scopus 로고    scopus 로고
    • On the use of large marker panels to estimate inbreeding and relatedness: Empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs
    • Santure AW, Stapley J, Ball AD, Birkhead TR, Burke T, et al. (2010) On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs. Mol Ecol 19: 1439-1451
    • (2010) Mol Ecol , vol.19 , pp. 1439-1451
    • Santure, A.W.1    Stapley, J.2    Ball, A.D.3    Birkhead, T.R.4    Burke, T.5
  • 29
    • 84861006379 scopus 로고    scopus 로고
    • Pedigreeand marker-based methods in the estimation of genetic diversity in small groups of Holstein cattle
    • Engelsma KA, Veerkamp RF, Calus MPL, Bijma P, Windig JJ (2012) Pedigreeand marker-based methods in the estimation of genetic diversity in small groups of Holstein cattle. J Anim Breed Genet 129: 195-205
    • (2012) J Anim Breed Genet , vol.129 , pp. 195-205
    • Engelsma, K.A.1    Veerkamp, R.F.2    Mpl, C.3    Bijma, P.4    Windig, J.J.5
  • 30
    • 80655128543 scopus 로고    scopus 로고
    • A comparison of approaches to estimate the inbreeding coefficient and pairwise relatedness using genomic and pedigree data in a sheep population
    • Li M-H, Stranden I, Tiirikka T, Sevon-Aimonen M-L, Kantanen J (2011) A comparison of approaches to estimate the inbreeding coefficient and pairwise relatedness using genomic and pedigree data in a sheep population. PLoS ONE 6: e26256
    • (2011) PLoS ONE , vol.6 , pp. e26256
    • Li, M.-H.1    Stranden, I.2    Tiirikka, T.3    Sevon-Aimonen, M.-L.4    Kantanen, J.5
  • 31
    • 84884728225 scopus 로고    scopus 로고
    • Measuring inbreeding and inbreeding depression on pig growth from pedigree or SNP derived metrics
    • Silio L, Rodr?guez MC, Fernandez A, Barragan C, Ben?tez R et al (2013) Measuring inbreeding and inbreeding depression on pig growth from pedigree or SNP derived metrics. J Anim Breed Genet doi: 10.1111/jbg12031
    • (2013) J Anim Breed Genet
    • Silio, L.1    Rodrguez, M.C.2    Fernandez, A.3    Barragan, C.4    Bentez, R.5
  • 32
    • 0039729381 scopus 로고
    • Seasonal influence on fecundity and litter performance characteristics in Iberian pigs
    • Dobao MT, Rodriganez J, Silio L (1983) Seasonal influence on fecundity and litter performance characteristics in Iberian pigs. Livest Prod Sci 10: 601-610
    • (1983) Livest Prod Sci , vol.10 , pp. 601-610
    • Dobao, M.T.1    Rodriganez, J.2    Silio, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.