Colonization of Alcaligenes faecalis strain JBW4 in natural soils and its detoxification of endosulfan

Applied Microbiology and Biotechnology

Volumn 98, Issue 3, 2014, Pages 1407-1416

  Kong, Lingfen ^a   Zhu, Shaoyuan ^b   Zhu, Lusheng ^a   Xie, Hui ^a   Wei, Kai ^a   Yan, Tongxiang ^a   Wang, Jun ^a   Wang, Jinhua ^a   Wang, Fenghua ^a   Sun, Fengxia ^a  

^a SHANDONG AGRICULTURAL UNIVERSITY   (China)

^b OCEAN UNIVERSITY OF CHINA   (China)

Author keywords

Alcaligenes faecalis; Bacterial biodegradation; Enzymatic activities; PCR DGGE; SCGE; Soil microbial biomass carbon

Indexed keywords

BIODEGRADATION; BIOREMEDIATION; CELL CULTURE; DETOXIFICATION; ELECTROPHORESIS; GAS CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLITES; POLYMERASE CHAIN REACTION; SOIL POLLUTION; SOILS;

ALCALIGENES FAECALIS; ENZYMATIC ACTIVITIES; PCR-DGGE; SCGE; SOIL MICROBIAL BIOMASS CARBONS;

INSECTICIDES;

ENDOSULFAN; ORGANIC MATTER; BACTERIAL RNA; SOIL POLLUTANT;

BACTERIUM; BIODEGRADATION; COLONIZATION; DETOXIFICATION; ELECTROKINESIS; ENDOSULFAN; ENZYME ACTIVITY; GEL; METABOLITE; POLYMERASE CHAIN REACTION; SOIL DEGRADATION; SOIL MICROORGANISM; SOIL REMEDIATION; TOXICOLOGY;

ALCALIGENES FAECALIS; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL STRAIN; BIOREMEDIATION; COMET ASSAY; DENATURING GRADIENT GEL ELECTROPHORESIS; DETOXIFICATION; DNA DAMAGE; DNA FRAGMENTATION; EARTHWORM; ECOTOXICITY; ENZYME ACTIVITY; GENOTOXICITY; MASS FRAGMENTOGRAPHY; MICROBIAL BIOMASS; MICROBIAL DEGRADATION; MICROCOSM; NONHUMAN; POLLUTANT; POLYMERASE CHAIN REACTION; SOIL DEGRADATION; SOIL MICROFLORA; SOIL TREATMENT; BIOTRANSFORMATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; SOIL POLLUTANT;

ALCALIGENES FAECALIS; BACTERIA (MICROORGANISMS);

ALCALIGENES FAECALIS; BIOTRANSFORMATION; DENATURING GRADIENT GEL ELECTROPHORESIS; ENDOSULFAN; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; METABOLIC NETWORKS AND PATHWAYS; POLYMERASE CHAIN REACTION; RNA, BACTERIAL; SOIL MICROBIOLOGY; SOIL POLLUTANTS;

EID: 84898905795     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-013-5033-4     Document Type: Article

References (42)

1. Altenburger A, Ekelund F, Jacobsen CS (2010) Protozoa and their bacterial prey colonize sterile soil fast. Soil Biol Biochem 42:1636-1639
2. Ampe F, Omar BN, Moizan C, Wacher C, Guyot JP (1999) Polyphasic study of the spatial distribution of microorganisms in Mexican pozol, a fermented maize dough, demonstrates the need for cultivation-independent methods to investigate traditional fermentations. Appl Environ Microbiol 65(12):5464-5473
3. Arshad M, Hussain S, Saleem M (2008) Optimization of environmental parameters for biodegradation of alpha and beta endosulfan in soil slurry by Pseudomonas aeruginosa. J Appl Microbiol 104:364-370
4. Awasthi N, Singh AK, Jain RK, Khangarot BS, Kumar A (2003) Degradation and detoxification of endosulfan isomers by a defined co-culture of two Bacillus strains. Appl Microbiol Biotechnol 62:279-283
5. Bajaj A, Pathak A, Mudiam MR, Mayilrajand S, Manickam N (2010) Isolation and characterization of a Pseudomonas sp strain IITR01 capable of degrading α-endosulfan and endosulfansulfate. J Appl Microbiol 109:2135-2143
6. Chakrabarty S, Rajakumar A, Raghuveer K, Sridevi P, Mohanachary A, Prathibha Y, Bashyam L, Dutta-Gupta A, Senthilkumaran B (2012) Endosulfan and flutamide, alone and in combination, target ovarian growth in juvenile catfish, Clarias batrachus. Comp Biochem Physiol Part C 155:491-497
7. Dolci P, Zenato S, Pramotton R, Barmaz A, Alessandria V, Rantsiou K, Cocolin L (2012) Cheese surface microbiota complexity: RT-PCR-DGGE, a tool for a detailed picture? Int J Food Microbiol 162:8-12
8. Goswami S, Singh DK (2009) Biodegradation of α and β endosulfan in broth medium and soil microcosm by bacterial strain Bordetella sp B9. Biodegradation 20:199-207
9. Goswami S, Vig K, Dileep K (2009) Biodegradation of α and β endosulfan by Aspergillus sydoni. Chemosphere 75:883-888
10. Gu Y, Zhang X, Tu S, Lindstro K (2009) Soil microbial biomass, crop yields, and bacterial community structure as affected by long-term fertilizer treatments under wheat-rice cropping. Eur J Soil Biol 45:239-246
11. Horne I, Sutherland TD, Harcourt RL, Russell R, Oakeshott JG (2002) Identification of an opd (Organophosphate Degradation) gene in an Agrobacterium isolate. Appl Microbiol Biotechnol 68:3371-3376
12. Huang H, Zhang S, Wu N, Luo L, Christie P (2009) Influence of Glomus etunicatum/Zea mays mycorrhiza on atrazine degradation, soil phosphatase and dehydrogenase activities, and soil microbial community structure. Soil Biol Biochem 41:726-734
13. Hussain S, Arshad M, Saleem M, Khalid A (2007) Biodegradation of α- and β-endosulfan by soil bacteria. Biodegradation 18:731-740
14. Kalam A, Tah J, Mukherjee AK (2004) Pesticide effects on microbial population and soil enzyme activities during vermicomposting of agricultural waste. J Environ Biol 25(2):201-208
15. Kataoka R, Takagi K, Sakakibara F (2011) Biodegradation of endosulfan by Mortieralla sp strain W8 in soil: influence of different substrates on biodegradation. Chemosphere 85:548-552
16. Kaushik A, Sharma HR, Jain S, Dawra S, Kaushik CP (2010) Pesticide pollution of river Ghaggar in Haryana, India. Environ Monit Assess 160:61-69
17. Końca K, Lankoff A, Banasik A, Lisowska H, Kuszewski T, Gózdz S, Koza Z, Wojcik A (2003) A cross-platform public domain PC image-analysis program for the comet assay. Mutat Res 534:15-20
18. Kong LF, Zhu SY, Zhu LS, Xie H, Su KC, Yan TX, Wang J, Wang JH, Wang FH, Sun FX (2013) Biodegradation of the organochlorine pesticide endosulfan by the bacterial strain Alcaligenes faecalis JBW4. J Environ Sci. doi: 10.1016/S1001-0742(12)60288-5
19. Kumar K, Saravana S, Krishnamurthi K, Kanade GS, Chakrabarti T (2007) Enrichment and isolation of endosulfan degrading and detoxifying bacteria. Chemosphere 68:317-322
20. Kumar M, Lakshmi VC, Khanna S (2008) Biodegradation and bioremediation of endosulfan contaminated soil. Bioresource Technol 99:3116-3122
21. Kumar A, Nayak AK, Shukla AK, Panda BB, Raja R, Shahid M, Tripathi R, Mohanty S, Rath PC (2012) Microbial biomass and carbon mineralization in agricultural soils as affected by pesticide addition. Bull Environ Contam Toxicol 88:538-542
22. Kwon GS, Kim JE, Kim TK, Sohn HY, Koh SC, Shin KS, Kim DG (2002) Klebsiella pneumoniae KE-1 degrades endosulfan without formation of the toxic metabolite, endosulfan sulfate. FEMS Microbiol Lett 215:255-259
23. Kwon GS, Sohn HY, Shin KS, Kim E, Seo BI (2005) Biodegradation of the organochlorine insecticide, endosulfan, and the toxic metabolite, endosulfan sulfate, by Klebsiellaoxytoca KE-8. Appl Microbiol Biotechnol 67:845-850
24. Lecomte J, Arnaud M, Hijri M (2011) Isolation and identification of soil bacteria growing at the expense of arbuscular mycorrhizal fungi. FEMS Microbiol Lett 317:43-51
25. Li W, Dai Y, Xue BB, Li YY, Peng X, Zhangg JS, Yan YC (2009) Biodegradation and detoxification of endosulfan in aqueous medium and soil by Achromobacter xylosoxidans strain CS5. J Hazard Mater 167:209-216
26. Lubick N (2010) Endosulfan's exit: US EPA pesticide review leads to a ban. Science 328:1466
27. OECD (1996) Guideline for testing of chemicals. OECD, Paris, pp 62-76
28. Omar SA, Abdel-Sater MA (2001) Microbial populations and enzyme activities in soil treated with pesticides. Water Air Soil Poll 127:49-63
29. Rao D, Skovhus T, Tujula N, Holmstro C, Dahllo I, Webb JS, Kjelleberg S (2010) Ability of Pseudoalteromonas tunicata to colonize natural biofilms and its effect on microbial community structure. FEMS Microbiol Ecol 73:450-457
30. Sannino F, Gianfreda L (2001) Pesticide influence on soil enzymatic activities. Chemosphere 45:417-425
31. Sheu C, Wu CY, Chen SC, Lo CC (2008) Extraction of DNA from soil for analysis of bacterial diversity in transgenic and nontransgenic papaya sites. J Agric Food Chem 56:11969-11975
32. Shivaramaiah HM, Kennedy IR (2006) Biodegradation of endosulfan by a soil bacterium. J Environ Sci Health B 41:895-905
33. Shivaramaiah HM, Sanchez-Bayo F, Al-Rifai J, Kennedy IR (2005) The fate of endosulfan in water. J Environ Sci Health B 40:711-720
34. Singh NP, McCoy MT, Tice RR, Schneider EL (1988) A simple technique for quantitation of low levels of DNA damage in individual cells. Exp Cell Res 175:184-191
35. Song Y, Zhu LS, Wang J, Wang JH, Liu W, Xie H (2009) DNA damage and effects on antioxidative enzymes in earthworm (Eisenia foetida) induced by atrazine. Soil Biol Biochem 41:905-909
36. Sparling GP (1992) Ratio of microbial biomass carbon to soil organic carbon as a sensitive indicator of changes in soil organic matter. Aust J Soil Res 30(2):195-207
37. Vance ED, Brookes PC, Jenkinson DS (1987) An extraction method for measuring soil microbial biomass C. Soil Biol Biochem 19:703-707
38. Verma A, Ali D, Farooq M, Pant AB, Hans RK (2011) Expression and inducibility of endosulfan metabolizing gene in Rhodococcus strain isolated from earthworm gut microflora for its application in bioremediation. Bioresource Technol 102:2979-2984
39. Weber J, Halsall C, Muir D, Teixeira C, Small J, Solomon K, Hermanson M, Hung H, Bidleman T (2010) Endosulfan, a global pesticide: a review of its fate in the environment and occurrence in the Arctic. Sci Total Environ 408:2966-2984
40. Weir KM, Sutherland TD, Horne I, Russell R, Oakeshott JG (2006) A single monooxygenase, ese, is involved in the metabolism of the organochlorides endosulfan and endosulfate in an Arthrobacter sp Appl Environ Microbiol 72:3524-3530
41. Wu J, Joergensen RG, Pommerening B, Chaussod R, Brookes PC (1990) Measurement of soil microbial biomass C by fumigation-extraction - an automated procedure. Soil Bio Biochem 22:1167-1169
42. Yang C, Sun T, He W, Zhou Q, Chen S (2007) Single and joint effects of pesticides and mercury on soil urease. J Environ Sci 19:210-216