Molecular phylogeny analysis and species identification of Dendrobium (Orchidaceae) in China

Biochemical Genetics

Volumn 52, Issue 3-4, 2014, Pages 127-136

  Feng, Shang Guo ^a   Lu, Jiang Jie ^a   Gao, Ling ^a   Liu, Jun Jun ^a   Wang, Hui Zhong ^a  

^a HANGZHOU NORMAL UNIVERSITY   (China)

Author keywords

Dendrobium; Genetic diversity; Phylogeny; Sequence related amplified polymorphism (SRAP)

Indexed keywords

ARTICLE; CHINA; DENDROBIUM; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GERMPLASM; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; SEQUENCE RELATED AMPLIFIED POLYMORPHISM; SPECIES IDENTIFICATION;

DENDROBIUM; ORCHIDACEAE;

CHINA; DENDROBIUM; DNA, PLANT; GENETIC MARKERS; GENETIC VARIATION; PHYLOGENY; PLANT LEAVES; POLYMORPHISM, GENETIC; SPECIES SPECIFICITY;

EID: 84898770903     PISSN: 00062928     EISSN: 15734927     Source Type: Journal    
DOI: 10.1007/s10528-013-9633-6     Document Type: Article

References (27)

1. Aneja B, Yadav N, Chawla V, Yadav R (2012) Sequence-related amplified polymorphism (SRAP) molecular marker system and its applications in crop improvement. Mol Breed 30(4):1635-1648
2. Bao X, Shun Q, Chen L (2001) The medicinal plants of Dendrobium (Shi-hu) in China. Shanghai Medicinal University Press and Fudan University Press, Shanghai
3. Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32(3):314-331 (Pubitemid 11105557)
4. Budak H, Shearman RC, Parmaksiz I, Gaussoin RE, Riordan TP, Dweikat I (2004) Molecular characterization of Buffalo grass germplasm using sequence-related amplified polymorphism markers. Theor Appl Genet 108(2):328-334 (Pubitemid 38162216)
5. Cai XY, Feng ZY, Zhang XX, Xu W, Hou BW, Ding XY (2011) Genetic diversity and population structure of an endangered Orchid (Dendrobium loddigesii Rolfe) from China revealed by SRAP markers. Sci Hortic 129(4):877-881
6. Carlsward BS, Stern WL, Judd WS, Lucansky TW (1997) Comparative leaf anatomy and systematics in Dendrobium, sections Aporum and Rhizobium (Orchidaceae). Int J Plant Sci 158(3):332-342 (Pubitemid 27471668)
7. Ding G, Zhang DZ, Ding XY, Zhou Q, Zhang WC, Li XX (2008) Genetic variation and conservation of the endangered Chinese endemic herb Dendrobium officinale based on SRAP analysis. Plant Syst Evol 276(3-4):149-156
8. Ferriol M, Pico B, Nuez F (2003) Genetic diversity of a germplasm collection of Cucurbita pepo using SRAP and AFLP markers. Theor Appl Genet 107(2):271-282 (Pubitemid 36922305)
9. Ferriol M, Pico B, de P, Nuez F (2004) Molecular diversity of a germplasm collection of squash (Cucurbita moschata) determined by SRAP and AFLP markers. Crop Sci 4:653-664 (Pubitemid 38318979)
10. Huang LK, Bughrara S, Zhang XQ, Bales-Arcelo C, Bin X (2011) Genetic diversity of switchgrass and its relative species in Panicum genus using molecular markers. Biochem Syst Ecol 39(4):685-693
11. Lau DTW, Shaw PC, Wang J, But PPH (2001) Authentication of medicinal Dendrobium species by the internal transcribed spacer of ribosomal DNA. Planta Med 67(5):456-460 (Pubitemid 32652584)
12. Li G, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103(2-3):455-461 (Pubitemid 32770199)
13. Lu JJ, Wang S, Zhao HY, Liu JJ, Wang HZ (2012a) Genetic linkage map of EST-SSR and SRAP markers in the endangered Chinese endemic herb Dendrobium (Orchidaceae). Genet Mol Res 11(4):4654-4667
14. Lu JJ, Zhao HY, Suo NN, Wang S, Shen B, Wang HZ, Liu JJ (2012b) Genetic linkage maps of Dendrobium moniliforme and D. officinale based on EST-SSR, SRAP, ISSR and RAPD markers. Sci Hortic 137:1-10
15. Morris MW, Stern WL, Judd WS (1996) Vegetative anatomy and systematics of subtribe Dendrobiinae (Orchidaceae). Bot J Linn Soc 120(2):89-144 (Pubitemid 26310477)
16. Mutlu N, Boyaci FH, Gocmen M, Abak K (2008) Development of SRAP, SRAP-RGA, RAPD and SCAR markers linked with a Fusarium wilt resistance gene in eggplant. Theor Appl Genet 117(8):1303-1312
17. Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76(10):5269-5273 (Pubitemid 10236121)
18. Rahman M, McVetty PB, Li G (2007) Development of SRAP, SNP and multiplexed SCAR molecular markers for the major seed coat color gene in Brassica rapa L. Theor Appl Genet 115(8):1101-1107 (Pubitemid 350043565)
19. Rogers SO, Bendich AJ (1985) Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Mol Biol 5(2):69-76
20. Rohlf F (1997) NTSYS-pc: numerical taxonomy and multivariate analysis system, version 2.2. Applied Biostatistics, New York
21. Stern WL, Morris MW, Judd WS (1994) Anatomy of the thick leaves in Dendrobium section Rhizobium (Orchidaceae). Int J Plant Sci 155(6):716-729
22. Suman A, Kimbeng CA, Edmé SJ, Veremis J (2008) Sequence-related amplified polymorphism (SRAP) markers for assessing genetic relationships and diversity in sugarcane germplasm collections. Plant Genet Res 6(03):222
23. Tsi ZH, Chen SC, Luo YB, Zhu GH (1999) Orchidaceae (3). Flora Republicae Popularis Sinicae. Science Press, Beijing
24. Wang H-Z, Feng S-G, Lu J-J, Shi N-N, Liu J-J (2009) Phylogenetic study and molecular identification of 31 Dendrobium species using inter-simple sequence repeat (ISSR) markers. Sci Hortic 122(3):440-447
25. Weir BS (1990) Genetic data analysis. Methods for discrete population genetic data. Sinauer Associates, Sunderland, p 377
26. Xue D, Feng S, Zhao H, Jiang H, Shen B, Shi N, Lu J, Liu J, Wang H (2010) The linkage maps of Dendrobium species based on RAPD and SRAP markers. J Genet Genomics (Yi chuan xue bao) 37(3):197-204
27. Yue GH, Lam-Chan LT, Hong Y (2006) Development of simple sequence repeat (SSR) markers and their use in identification of Dendrobium varieties. Mol Ecol Notes 6(3):832-834 (Pubitemid 44252621)