-
1
-
-
33947273235
-
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
-
DOI 10.1016/j.cell.2007.01.043, PII S0092867407002577
-
Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ, (2007) Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103 (Pubitemid 46427877)
-
(2007)
Cell
, vol.128
, Issue.6
, pp. 1089-1103
-
-
Brennecke, J.1
Aravin, A.A.2
Stark, A.3
Dus, M.4
Kellis, M.5
Sachidanandam, R.6
Hannon, G.J.7
-
2
-
-
0028795178
-
Flamenco, a gene controlling the gypsy retrovirus of Drosophila melanogaster
-
Prud'homme N, Gans M, Masson M, Terzian C, Bucheton A, (1995) Flamenco, a gene controlling the gypsy retrovirus of Drosophila melanogaster. Genetics 139: 697-711
-
(1995)
Genetics
, vol.139
, pp. 697-711
-
-
Prud'Homme, N.1
Gans, M.2
Masson, M.3
Terzian, C.4
Bucheton, A.5
-
3
-
-
0037786824
-
COM, a heterochromatic locus governing the control of independent endogenous retroviruses from Drosophila melanogaster
-
Desset S, Meignin C, Dastugue B, Vaury C, (2003) COM, a heterochromatic locus governing the control of independent endogenous retroviruses from Drosophila melanogaster. Genetics 164: 501-509 (Pubitemid 36773487)
-
(2003)
Genetics
, vol.164
, Issue.2
, pp. 501-509
-
-
Desset, S.1
Meignin, C.2
Dastugue, B.3
Vaury, C.4
-
4
-
-
1942453393
-
Evidence for a piwi-Dependent RNA Silencing of the gypsy Endogenous Retrovirus by the Drosophila melanogaster flamenco Gene
-
DOI 10.1534/genetics.166.3.1313
-
Sarot E, Payen-Groschêne G, Bucheton A, Pelisson A, (2004) Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene. Genetics 166: 1313-1321 (Pubitemid 38507050)
-
(2004)
Genetics
, vol.166
, Issue.3
, pp. 1313-1321
-
-
Sarot, E.1
Payen-Groschene, G.2
Bucheton, A.3
Pelisson, A.4
-
5
-
-
65549105694
-
Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary
-
Malone CD, Brennecke J, Dus M, Stark A, Mccombie WR, Sachidanandam R, Hannon GJ, (2009) Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 137: 522-535
-
(2009)
Cell
, vol.137
, pp. 522-535
-
-
Malone, C.D.1
Brennecke, J.2
Dus, M.3
Stark, A.4
McCombie, W.R.5
Sachidanandam, R.6
Hannon, G.J.7
-
6
-
-
78149478349
-
Roles for the Yb body components Armitage and Yb in primary piRNA biogenesis in Drosophila
-
Saito K, Ishizu H, Komai M, Kotani H, Kawamura Y, Nishida KM, Siomi H, Siomi MC, (2010) Roles for the Yb body components Armitage and Yb in primary piRNA biogenesis in Drosophila. Genes Dev 24: 2493-2498
-
(2010)
Genes Dev
, vol.24
, pp. 2493-2498
-
-
Saito, K.1
Ishizu, H.2
Komai, M.3
Kotani, H.4
Kawamura, Y.5
Nishida, K.M.6
Siomi, H.7
Siomi, M.C.8
-
7
-
-
84883613240
-
'Dot COM', a nuclear transit center for the primary piRNA pathway in Drosophila
-
Dennis C, Zanni V, Brasset E, Zhang L, Eymery A, Jensen S, Rong Y, Vaury C, (2013) 'Dot COM', a nuclear transit center for the primary piRNA pathway in Drosophila. PLoS ONE 8: e72752
-
(2013)
PLoS ONE
, vol.8
-
-
Dennis, C.1
Zanni, V.2
Brasset, E.3
Zhang, L.4
Eymery, A.5
Jensen, S.6
Rong, Y.7
Vaury, C.8
-
8
-
-
69249225196
-
The Drosophila HP1 homolog rhino is required for transposon silencing and piRNA production by dual-strand clusters
-
Klattenhoff C, Xi H, Li C, Lee S, Xu J, Khurana JS, Zhang F, Schultz N, Koppetsch BS, Nowosielska A, et al, (2009) The Drosophila HP1 homolog rhino is required for transposon silencing and piRNA production by dual-strand clusters. Cell 138: 1137-1149
-
(2009)
Cell
, vol.138
, pp. 1137-1149
-
-
Klattenhoff, C.1
Xi, H.2
Li, C.3
Lee, S.4
Xu, J.5
Khurana, J.S.6
Zhang, F.7
Schultz, N.8
Koppetsch, B.S.9
Nowosielska, A.10
-
9
-
-
81255137997
-
The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline
-
Pane A, Jiang P, Zhao DY, Singh M, Schüpbach T, (2011) The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. EMBO J 30: 4601-4615
-
(2011)
EMBO J
, vol.30
, pp. 4601-4615
-
-
Pane, A.1
Jiang, P.2
Zhao, D.Y.3
Singh, M.4
Schüpbach, T.5
-
10
-
-
84876070120
-
An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
-
Li XZ, Roy CK, Dong X, Bolcun-Filas E, Wang J, Han BW, Xu J, Moore MJ, Schimenti JC, Weng Z, et al, (2013) An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes. Mol Cell 50: 67-81
-
(2013)
Mol Cell
, vol.50
, pp. 67-81
-
-
Li, X.Z.1
Roy, C.K.2
Dong, X.3
Bolcun-Filas, E.4
Wang, J.5
Han, B.W.6
Xu, J.7
Moore, M.J.8
Schimenti, J.C.9
Weng, Z.10
-
11
-
-
0030571478
-
Generality of a functional initiator consensus sequence
-
DOI 10.1016/S0378-1119(96)00438-6, PII S0378111996004386
-
Lo K, Smale ST, (1996) Generality of a functional initiator consensus sequence. Gene 182: 13-22 (Pubitemid 27007160)
-
(1996)
Gene
, vol.182
, Issue.1-2
, pp. 13-22
-
-
Lo, K.1
Smale, S.T.2
-
12
-
-
0012253746
-
Computational analysis of core promoters in the Drosophila genome
-
Ohler U, Liao G-C, Niemann H, Rubin GM, (2002) Computational analysis of core promoters in the Drosophila genome. Genome Biol 3: research0087-0087.12
-
(2002)
Genome Biol
, vol.3
-
-
Ohler, U.1
Liao, G.-C.2
Niemann, H.3
Rubin, G.M.4
-
13
-
-
0028899937
-
Promoter elements in Drosophila melanogaster revealed by sequence analysis
-
Arkhipova IR, (1995) Promoter elements in Drosophila melanogaster revealed by sequence analysis. Genetics 139: 1359-1369.
-
(1995)
Genetics
, vol.139
, pp. 1359-1369
-
-
Arkhipova, I.R.1
-
14
-
-
33744805985
-
Genome-wide analysis of mammalian promoter architecture and evolution
-
DOI 10.1038/ng1789, PII N1789
-
Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CAM, Taylor MS, Engström PG, Frith MC, et al, (2006) Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet 38: 626-635 (Pubitemid 43927303)
-
(2006)
Nature Genetics
, vol.38
, Issue.6
, pp. 626-635
-
-
Carninci, P.1
Sandelin, A.2
Lenhard, B.3
Katayama, S.4
Shimokawa, K.5
Ponjavic, J.6
Semple, C.A.M.7
Taylor, M.S.8
Engstrom, P.G.9
Frith, M.C.10
Forrest, A.R.R.11
Alkema, W.B.12
Tan, S.L.13
Plessy, C.14
Kodzius, R.15
Ravasi, T.16
Kasukawa, T.17
Fukuda, S.18
Kanamori-Katayama, M.19
Kitazume, Y.20
Kawaji, H.21
Kai, C.22
Nakamura, M.23
Konno, H.24
Nakano, K.25
Mottagui-Tabar, S.26
Arner, P.27
Chesi, A.28
Gustincich, S.29
Persichetti, F.30
Suzuki, H.31
Grimmond, S.M.32
Wells, C.A.33
Orlando, V.34
Wahlestedt, C.35
Liu, E.T.36
Harbers, M.37
Kawai, J.38
Bajic, V.B.39
Hume, D.A.40
Hayashizaki, Y.41
more..
-
15
-
-
79958701393
-
Inhibiting eukaryotic transcription. Which compound to choose? How to evaluate its activity?
-
Bensaude O, (2011) Inhibiting eukaryotic transcription. Which compound to choose? How to evaluate its activity?. Transcription 2: 103-108.
-
(2011)
Transcription
, vol.2
, pp. 103-108
-
-
Bensaude, O.1
-
16
-
-
84964865993
-
Targeting developmental regulators of zebrafish exocrine pancreas as a therapeutic approach in human pancreatic cancer
-
Yee NS, Zhou W, Chun SG, Liang IC, Yee RK, (2012) Targeting developmental regulators of zebrafish exocrine pancreas as a therapeutic approach in human pancreatic cancer. Biol Open 1: 295-307
-
(2012)
Biol Open
, vol.1
, pp. 295-307
-
-
Yee, N.S.1
Zhou, W.2
Chun, S.G.3
Liang, I.C.4
Yee, R.K.5
-
17
-
-
0029851638
-
The role of segment polarity genes during early oogenesis in Drosophila
-
Forbes AJ, Spradling AC, Ingham PW, Lin H, (1996) The role of segment polarity genes during early oogenesis in Drosophila. Development 122: 3283-3294 (Pubitemid 26371992)
-
(1996)
Development
, vol.122
, Issue.10
, pp. 3283-3294
-
-
Forbes, A.J.1
Spradling, A.C.2
Ingham, P.W.3
Lin, H.4
-
18
-
-
0033582908
-
Hedgehog controls limb development by regulating the activities of distinct transcriptional activator and repressor forms of cubitus interruptus
-
Méthot N, Basler K, (1999) Hedgehog controls limb development by regulating the activities of distinct transcriptional activator and repressor forms of Cubitus interruptus. Cell 96: 819-831 (Pubitemid 29165085)
-
(1999)
Cell
, vol.96
, Issue.6
, pp. 819-831
-
-
Methot, N.1
Basler, K.2
-
19
-
-
3142686745
-
The BDGP gene disruption project: Single transposon insertions associated with 40% of Drosophila genes
-
DOI 10.1534/genetics.104.026427
-
Bellen HJ, (2004) The BDGP gene disruption project: single transposon insertions associated With 40% of Drosophila genes. Genetics 167: 761-781 (Pubitemid 38931863)
-
(2004)
Genetics
, vol.167
, Issue.2
, pp. 761-781
-
-
Bellen, H.J.1
Levis, R.W.2
Liao, G.3
He, Y.4
Carlson, J.W.5
Tsang, G.6
Evans-Holm, M.7
Hiesinger, P.R.8
Schulze, K.L.9
Rubin, G.M.10
Hoskins, R.A.11
Spradling, A.C.12
-
20
-
-
0028910659
-
Molecular phylogeny and divergence times of drosophilid species
-
Russo CA, Takezaki N, Nei M, (1995) Molecular phylogeny and divergence times of drosophilid species. Mol Biol Evol 12: 391-404
-
(1995)
Mol Biol Evol
, vol.12
, pp. 391-404
-
-
Russo, C.A.1
Takezaki, N.2
Nei, M.3
-
21
-
-
1242352089
-
Temporal Patterns of Fruit Fly (Drosophila) Evolution Revealed by Mutation Clocks
-
DOI 10.1093/molbev/msg236
-
Tamura K, (2004) Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol Biol Evol 21: 36-44 (Pubitemid 38233516)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.1
, pp. 36-44
-
-
Tamura, K.1
Subramanian, S.2
Kumar, S.3
-
22
-
-
79952792594
-
The Yb body, a major site for PIWI-associated RNA biogenesis and a gateway for PIWI expression and transport to the nucleus in somatic cells
-
Qi H, Watanabe T, Ku H-Y, Liu N, Zhong M, Lin H, (2011) The Yb body, a major site for PIWI-associated RNA biogenesis and a gateway for PIWI expression and transport to the nucleus in somatic cells. J Biol Chem 286: 3789-3797
-
(2011)
J Biol Chem
, vol.286
, pp. 3789-3797
-
-
Qi, H.1
Watanabe, T.2
Ku, H.-Y.3
Liu, N.4
Zhong, M.5
Lin, H.6
-
23
-
-
84870060785
-
Transcriptional silencing of transposons by PIWI and maelstrom and its impact on chromatin state and gene expression
-
Sienski G, Dönertas D, Brennecke J, (2012) Transcriptional silencing of transposons by PIWI and maelstrom and its impact on chromatin state and gene expression. Cell 151: 964-980
-
(2012)
Cell
, vol.151
, pp. 964-980
-
-
Sienski, G.1
Dönertas, D.2
Brennecke, J.3
-
24
-
-
34249011855
-
The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis
-
DOI 10.1534/genetics.106.068106
-
Mével-Ninio M, Pelisson A, Kinder J, Campos AR, Bucheton A, (2007) The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis. Genetics 175: 1615-1624 (Pubitemid 46789949)
-
(2007)
Genetics
, vol.175
, Issue.4
, pp. 1615-1624
-
-
Mevel-Ninio, M.1
Pelisson, A.2
Kinder, J.3
Campos, A.R.4
Bucheton, A.5
-
25
-
-
84869016142
-
UAP56 Couples piRNA clusters to the perinuclear transposon silencing machinery
-
Zhang F, Wang J, Xu J, Zhang Z, Koppetsch BS, Schultz N, Vreven T, Meignin C, Davis I, Zamore PD, et al, (2012) UAP56 Couples piRNA clusters to the perinuclear transposon silencing machinery. Cell 151: 871-884
-
(2012)
Cell
, vol.151
, pp. 871-884
-
-
Zhang, F.1
Wang, J.2
Xu, J.3
Zhang, Z.4
Koppetsch, B.S.5
Schultz, N.6
Vreven, T.7
Meignin, C.8
Davis, I.9
Zamore, P.D.10
-
26
-
-
62349104354
-
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes
-
Bartolomé C, Bello X, Maside X, (2009) Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes. Genome Biol 10: R22
-
(2009)
Genome Biol
, vol.10
-
-
Bartolomé, C.1
Bello, X.2
Maside, X.3
-
27
-
-
84889667828
-
Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters
-
Zanni V, Eymery A, Coiffet M, Zytnicki M, Luyten I, Quesneville H, Vaury C, Jensen S, (2013) Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters. Proc Natl Acad Sci 110: 19842-19847.
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. 19842-19847
-
-
Zanni, V.1
Eymery, A.2
Coiffet, M.3
Zytnicki, M.4
Luyten, I.5
Quesneville, H.6
Vaury, C.7
Jensen, S.8
-
28
-
-
0035710746
-
-ΔΔCT method
-
DOI 10.1006/meth.2001.1262
-
-ΔΔCT method. Methods 25: 402-408 (Pubitemid 34164012)
-
(2001)
Methods
, vol.25
, Issue.4
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
29
-
-
84873021909
-
NucBase, an easy to use read mapper for small RNAs
-
Dufourt J, Pouchin P, Peyret P, Brasset E, Vaury C, (2013) NucBase, an easy to use read mapper for small RNAs. Mob DNA 4: 1
-
(2013)
Mob DNA
, vol.4
, pp. 1
-
-
Dufourt, J.1
Pouchin, P.2
Peyret, P.3
Brasset, E.4
Vaury, C.5
-
30
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL, (2012) Fast gapped-read alignment with Bowtie 2. Nat Meth 9: 357-359
-
(2012)
Nat Meth
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
|