메뉴 건너뛰기




Volumn 9, Issue 3, 2014, Pages

Deep sequencing-based identification of small regulatory RNAs in Synechocystis sp. PCC 6803

Author keywords

[No Author keywords available]

Indexed keywords

RNA; SMALL REGULATORY RNA; UNCLASSIFIED DRUG;

EID: 84898625279     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0092711     Document Type: Article
Times cited : (21)

References (68)
  • 1
    • 0023163693 scopus 로고
    • Early Archean (3.3-billion to 3.5-billion-year-old) microfossils from Warrawoona Group, Australia.
    • Schopf JW, Packer BM (1987) Early Archean (3.3-billion to 3.5-billion-year-old) microfossils from Warrawoona Group, Australia. Science 237: 70-73. (Pubitemid 17264400)
    • (1987) Science , vol.237 , Issue.4810 , pp. 70-73
    • Schopf, J.W.1    Packer, B.M.2
  • 2
    • 0030329862 scopus 로고    scopus 로고
    • Complete genome sequence of a cyanobacterium Synechocystis sp. PCC 6803, the oxygenic photosynthetic prokaryote
    • Ikeuchi M (1996) Complete genome sequence of a cyanobacterium Synechocystis sp. PCC 6803, the oxygenic photosynthetic prokaryote. Tanpakushitsu Kakusan Koso 41: 2579-2583.
    • (1996) Tanpakushitsu Kakusan Koso , vol.41 , pp. 2579-2583
    • Ikeuchi, M.1
  • 3
    • 71849086611 scopus 로고    scopus 로고
    • Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde
    • Atsumi S, Higashide W, Liao JC (2009) Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde. Nature Biotechnology 27: 1177-1180.
    • (2009) Nature Biotechnology , vol.27 , pp. 1177-1180
    • Atsumi, S.1    Higashide, W.2    Liao, J.C.3
  • 4
    • 78751638661 scopus 로고    scopus 로고
    • Engineering cyanobacteria to generate high-value products
    • Ducat DC, Way JC, Silver PA (2011) Engineering cyanobacteria to generate high-value products. Trends In Biotechnology 29: 95-103.
    • (2011) Trends in Biotechnology , vol.29 , pp. 95-103
    • Ducat, D.C.1    Way, J.C.2    Silver, P.A.3
  • 6
    • 58149177178 scopus 로고    scopus 로고
    • sRNAMap: Genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes
    • Huang HY, Chang HY, Chou CH, Tseng CP, Ho SY, et al. (2009) sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. Nucleic Acids Research 37: D150-154.
    • (2009) Nucleic Acids Research , vol.37
    • Huang, H.Y.1    Chang, H.Y.2    Chou, C.H.3    Tseng, C.P.4    Ho, S.Y.5
  • 7
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters LS, Storz G (2009) Regulatory RNAs in bacteria. Cell 136: 615-628.
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 8
    • 77956148437 scopus 로고    scopus 로고
    • A bacterial mRNA leader that employs different mechanisms to sense disparate intracellular signals
    • Park SY, Cromie MJ, Lee EJ, Groisman EA (2010) A bacterial mRNA leader that employs different mechanisms to sense disparate intracellular signals. Cell 142: 737-748.
    • (2010) Cell , vol.142 , pp. 737-748
    • Park, S.Y.1    Cromie, M.J.2    Lee, E.J.3    Groisman, E.A.4
  • 10
    • 77952128269 scopus 로고    scopus 로고
    • An antisense RNA that governs the expression kinetics of a multifunctional virulence gene
    • Lee EJ, Groisman EA (2010) An antisense RNA that governs the expression kinetics of a multifunctional virulence gene. Molecular Microbiology 76: 1020-1033.
    • (2010) Molecular Microbiology , vol.76 , pp. 1020-1033
    • Lee, E.J.1    Groisman, E.A.2
  • 11
    • 77649179438 scopus 로고    scopus 로고
    • Mutants of Anabaena sp. PCC 7120 lacking alr1690 and alpha-furA antisense RNA show a pleiotropic phenotype and altered photosynthetic machinery
    • Hernandez JA, Alonso I, Pellicer S, Luisa Peleato M, Cases R, et al. (2010) Mutants of Anabaena sp. PCC 7120 lacking alr1690 and alpha-furA antisense RNA show a pleiotropic phenotype and altered photosynthetic machinery. Journal Of Plant Physiology 167: 430-437.
    • (2010) Journal of Plant Physiology , vol.167 , pp. 430-437
    • Hernandez, J.A.1    Alonso, I.2    Pellicer, S.3    Luisa Peleato, M.4    Cases, R.5
  • 12
    • 77956879952 scopus 로고    scopus 로고
    • Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA
    • Mandin P, Gottesman S (2010) Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA. Embo Journal 29: 3094-3107.
    • (2010) Embo Journal , vol.29 , pp. 3094-3107
    • Mandin, P.1    Gottesman, S.2
  • 14
    • 80052526246 scopus 로고    scopus 로고
    • Genome-wide detection of novel regulatory RNAs in E. Coli
    • Raghavan R, Groisman EA, Ochman H (2011) Genome-wide detection of novel regulatory RNAs in E. coli. Genome Research 21: 1487-1497.
    • (2011) Genome Research , vol.21 , pp. 1487-1497
    • Raghavan, R.1    Groisman, E.A.2    Ochman, H.3
  • 15
    • 84859037548 scopus 로고    scopus 로고
    • A genome-wide identification analysis of small regulatory RNAs in Mycobacterium tuberculosis by RNA-Seq and conservation analysis
    • Pellin D, Miotto P, Ambrosi A, Cirillo DM, Di Serio C (2012) A genome-wide identification analysis of small regulatory RNAs in Mycobacterium tuberculosis by RNA-Seq and conservation analysis. PLoS One 7: e32723.
    • (2012) PLoS One , vol.7
    • Pellin, D.1    Miotto, P.2    Ambrosi, A.3    Cirillo, D.M.4    Di Serio, C.5
  • 16
    • 84857386433 scopus 로고    scopus 로고
    • Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae
    • Acebo P, Martin-Galiano AJ, Navarro S, Zaballos A, Amblar M (2012) Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae. RNA 18: 530-546.
    • (2012) RNA , vol.18 , pp. 530-546
    • Acebo, P.1    Martin-Galiano, A.J.2    Navarro, S.3    Zaballos, A.4    Amblar, M.5
  • 18
    • 77949425194 scopus 로고    scopus 로고
    • The primary transcriptome of the major human pathogen Helicobacter pylori
    • Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, et al. (2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464: 250-255.
    • (2010) Nature , vol.464 , pp. 250-255
    • Sharma, C.M.1    Hoffmann, S.2    Darfeuille, F.3    Reignier, J.4    Findeiss, S.5
  • 19
    • 84875521277 scopus 로고    scopus 로고
    • Insights into the physiology and ecology of the brackish-water-adapted Cyanobacterium Nodularia spumigena CCY9414 based on a genome-transcriptome analysis
    • Voss B, Bolhuis H, Fewer DP, Kopf M, Moke F, et al. (2013) Insights into the physiology and ecology of the brackish-water-adapted Cyanobacterium Nodularia spumigena CCY9414 based on a genome-transcriptome analysis. PLoS One 8: e60224.
    • (2013) PLoS One , vol.8
    • Voss, B.1    Bolhuis, H.2    Fewer, D.P.3    Kopf, M.4    Moke, F.5
  • 20
    • 79959584995 scopus 로고    scopus 로고
    • Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. Strain PCC 7120 to combined-nitrogen deprivation
    • Flaherty BL, Van Nieuwerburgh F, Head SR, Golden JW (2011) Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation. BMC Genomics 12: 332.
    • (2011) BMC Genomics , vol.12 , pp. 332
    • Flaherty, B.L.1    Van Nieuwerburgh, F.2    Head, S.R.3    Golden, J.W.4
  • 21
    • 79951700321 scopus 로고    scopus 로고
    • Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage
    • Prevost K, Desnoyers G, Jacques JF, Lavoie F, Masse E (2011) Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage. Genes & Development 25: 385-396.
    • (2011) Genes & Development , vol.25 , pp. 385-396
    • Prevost, K.1    Desnoyers, G.2    Jacques, J.F.3    Lavoie, F.4    Masse, E.5
  • 22
    • 84858866772 scopus 로고    scopus 로고
    • A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli
    • Thomason MK, Fontaine F, De Lay N, Storz G (2012) A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli. Molecular Microbiology 84: 17-35.
    • (2012) Molecular Microbiology , vol.84 , pp. 17-35
    • Thomason, M.K.1    Fontaine, F.2    De Lay, N.3    Storz, G.4
  • 27
    • 0023555634 scopus 로고
    • Transcriptional analysis of the cyanobacterial gvpABC operon in differentiated cells: Occurrence of an antisense RNA complementary to three overlapping transcripts
    • DOI 10.1016/0378-1119(87)90210-1
    • Csiszar K, Houmard J, Damerval T, Tandeau de Marsac N (1987) Transcriptional analysis of the cyanobacterial gvpABC operon in differentiated cells: occurrence of an antisense RNA complementary to three overlapping transcripts. Gene 60: 29-37. (Pubitemid 18026826)
    • (1987) Gene , vol.60 , Issue.1 , pp. 29-37
    • Csiszar, K.1    Houmard, J.2    Damerval, T.3    Tandeau De, M.N.4
  • 28
    • 0030695907 scopus 로고    scopus 로고
    • A novel small stable RNA, 6Sa RNA, from the cyanobacterium Synechococcus sp. strain PCC6301
    • DOI 10.1016/S0014-5793(97)01237-4, PII S0014579397012374
    • Watanabe T, Sugiura M, Sugita M (1997) A novel small stable RNA, 6Sa RNA, from the cyanobacterium Synechococcus sp. strain PCC6301. Febs Letters 416: 302-306. (Pubitemid 27475386)
    • (1997) FEBS Letters , vol.416 , Issue.3 , pp. 302-306
    • Watanabe, T.1    Sugiura, M.2    Sugita, M.3
  • 29
    • 17844379221 scopus 로고    scopus 로고
    • 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter
    • DOI 10.1261/rna.7286705
    • Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, Breaker RR (2005) 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter. RNA 11: 774-784. (Pubitemid 40594342)
    • (2005) RNA , vol.11 , Issue.5 , pp. 774-784
    • Barrick, J.E.1    Sudarsan, N.2    Weinberg, Z.3    Ruzzo, W.L.4    Breaker, R.R.5
  • 30
    • 0027053219 scopus 로고
    • Analysis of the gene encoding the RNA subunit of ribonuclease P from cyanobacteria
    • Vioque A (1992) Analysis of the gene encoding the RNA subunit of ribonuclease P from cyanobacteria. Nucleic Acids Research 20: 6331-6337.
    • (1992) Nucleic Acids Research , vol.20 , pp. 6331-6337
    • Vioque, A.1
  • 31
    • 0035800807 scopus 로고    scopus 로고
    • Conditional expression of RNase P in the cyanobacterium Synechocystis sp. PCC6803 allows detection of precursor RNAs. Insight in the in vivo maturation pathway of transfer and other stable RNAs
    • Tous C, Vega-Palas MA, Vioque A (2001) Conditional expression of RNase P in the cyanobacterium Synechocystis sp. PCC6803 allows detection of precursor RNAs. Insight in the in vivo maturation pathway of transfer and other stable RNAs. Journal Of Biological Chemistry 276: 29059-29066.
    • (2001) Journal of Biological Chemistry , vol.276 , pp. 29059-29066
    • Tous, C.1    Vega-Palas, M.A.2    Vioque, A.3
  • 32
    • 0032540939 scopus 로고    scopus 로고
    • RNase P RNA from Prochloroccus marinus: Contribution of substrate domains to recognition by a cyanobacterial ribozyme
    • DOI 10.1016/S0014-5793(98)00729-7, PII S0014579398007297
    • Hess WR, Fingerhut C, Schon A (1998) RNase P RNA from Prochlorococcus marinus: contribution of substrate domains to recognition by a cyanobacterial ribozyme. Febs Letters 431: 138-142. (Pubitemid 28334204)
    • (1998) FEBS Letters , vol.431 , Issue.2 , pp. 138-142
    • Hess, W.R.1    Fingerhut, C.2    Schon, A.3
  • 33
    • 0036022492 scopus 로고    scopus 로고
    • Conserved and variable domains within divergent RNase P RNA gene sequences of Prochlorococcus strains
    • DOI 10.1099/ijs.0.01983-0
    • Schon A, Fingerhut C, Hess WR (2002) Conserved and variable domains within divergent rnase P RNA gene sequences of Prochlorococcus strains. International Journal Of Systematic And Evolutionary Microbiology 52: 1383-1389. (Pubitemid 34846439)
    • (2002) International Journal of Systematic and Evolutionary Microbiology , vol.52 , Issue.4 , pp. 1383-1389
    • Schon, A.1    Fingerhut, C.2    Hess, W.R.3
  • 34
    • 29044436786 scopus 로고    scopus 로고
    • Identification of cyanobacterial non-coding RNAs by comparative genome analysis
    • Axmann IM, Kensche P, Vogel J, Kohl S, Herzel H, et al. (2005) Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biology 6: R73.
    • (2005) Genome Biology , vol.6
    • Axmann, I.M.1    Kensche, P.2    Vogel, J.3    Kohl, S.4    Herzel, H.5
  • 35
    • 36849045243 scopus 로고    scopus 로고
    • Two distinct types of 6S RNA in Prochlorococcus
    • DOI 10.1016/j.gene.2007.06.011, PII S0378111907003034, Marine Genomics
    • Axmann IM, Holtzendorff J, Voss B, Kensche P, Hess WR (2007) Two distinct types of 6S RNA in Prochlorococcus. Gene 406: 69-78. (Pubitemid 350225636)
    • (2007) Gene , vol.406 , Issue.1-2 , pp. 69-78
    • Axmann, I.M.1    Holtzendorff, J.2    Voss, B.3    Kensche, P.4    Hess, W.R.5
  • 36
    • 34548348934 scopus 로고    scopus 로고
    • 6S RNA: A regulator of transcription
    • Wassarman KM (2007) 6S RNA: a regulator of transcription. Molecular Microbiology 65: 1425-1431.
    • (2007) Molecular Microbiology , vol.65 , pp. 1425-1431
    • Wassarman, K.M.1
  • 37
    • 63749124071 scopus 로고    scopus 로고
    • Biocomputational prediction of non-coding RNAs in model cyanobacteria
    • Voss B, Georg J, Schon V, Ude S, Hess WR (2009) Biocomputational prediction of non-coding RNAs in model cyanobacteria. BMC Genomics 10: 123.
    • (2009) BMC Genomics , vol.10 , pp. 123
    • Voss, B.1    Georg, J.2    Schon, V.3    Ude, S.4    Hess, W.R.5
  • 38
    • 50849096398 scopus 로고    scopus 로고
    • The challenge of regulation in a minimal photoautotroph: Non-coding RNAs in Prochlorococcus
    • Steglich C, Futschik ME, Lindell D, Voss B, Chisholm SW, et al. (2008) The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus. PLoS Genetics 4: e1000173.
    • (2008) PLoS Genetics , vol.4
    • Steglich, C.1    Futschik, M.E.2    Lindell, D.3    Voss, B.4    Chisholm, S.W.5
  • 39
    • 70349462763 scopus 로고    scopus 로고
    • Evidence for a major role of antisense RNAs in cyanobacterial gene regulation
    • Georg J, Voss B, Scholz I, Mitschke J, Wilde A, et al. (2009) Evidence for a major role of antisense RNAs in cyanobacterial gene regulation. Molecular Systems Biology 5: 305.
    • (2009) Molecular Systems Biology , vol.5 , pp. 305
    • Georg, J.1    Voss, B.2    Scholz, I.3    Mitschke, J.4    Wilde, A.5
  • 41
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 42
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols 4: 44-57.
    • (2009) Nature Protocols , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 46
    • 84867135315 scopus 로고    scopus 로고
    • Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803
    • Sakurai I, Stazic D, Eisenhut M, Vuorio E, Steglich C, et al. (2012) Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803. Plant Physiology 160: 1000-1010.
    • (2012) Plant Physiology , vol.160 , pp. 1000-1010
    • Sakurai, I.1    Stazic, D.2    Eisenhut, M.3    Vuorio, E.4    Steglich, C.5
  • 47
    • 84866931878 scopus 로고    scopus 로고
    • The antisense RNA As1-flv4 in the Cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply
    • Eisenhut M, Georg J, Klahn S, Sakurai I, Mustila H, et al. (2012) The antisense RNA As1-flv4 in the Cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply. Journal Of Biological Chemistry 287: 33153-33162.
    • (2012) Journal of Biological Chemistry , vol.287 , pp. 33153-33162
    • Eisenhut, M.1    Georg, J.2    Klahn, S.3    Sakurai, I.4    Mustila, H.5
  • 48
    • 20444478991 scopus 로고    scopus 로고
    • Riboswitches as versatile gene control elements
    • DOI 10.1016/j.sbi.2005.05.003, PII S0959440X05000874
    • Tucker BJ, Breaker RR (2005) Riboswitches as versatile gene control elements. Current Opinion In Structural Biology 15: 342-348. (Pubitemid 40826454)
    • (2005) Current Opinion in Structural Biology , vol.15 , Issue.3 SPEC. ISS. , pp. 342-348
    • Tucker, B.J.1    Breaker, R.R.2
  • 49
    • 84872543206 scopus 로고    scopus 로고
    • A decade of riboswitches
    • Serganov A, Nudler E (2013) A decade of riboswitches. Cell 152: 17-24.
    • (2013) Cell , vol.152 , pp. 17-24
    • Serganov, A.1    Nudler, E.2
  • 50
    • 57249083988 scopus 로고    scopus 로고
    • IntaRNA: Efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
    • Busch A, Richter AS, Backofen R (2008) IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions. Bioinformatics 24: 2849-2856.
    • (2008) Bioinformatics , vol.24 , pp. 2849-2856
    • Busch, A.1    Richter, A.S.2    Backofen, R.3
  • 52
    • 12444311793 scopus 로고    scopus 로고
    • PSII-Tc protein plays an important role in dimerization of photosystem II
    • Iwai M, Katoh H, Katayama M, Ikeuchi M (2004) PSII-Tc protein plays an important role in dimerization of photosystem II. Plant And Cell Physiology 45: 1809-1816.
    • (2004) Plant and Cell Physiology , vol.45 , pp. 1809-1816
    • Iwai, M.1    Katoh, H.2    Katayama, M.3    Ikeuchi, M.4
  • 53
    • 20444495680 scopus 로고    scopus 로고
    • PsaK2 subunit in photosystem I is involved in state transition under high light condition in the cyanobacterium Synechocystis sp. PCC 6803
    • DOI 10.1074/jbc.M500369200
    • Fujimori T, Hihara Y, Sonoike K (2005) PsaK2 subunit in photosystem I is involved in state transition under high light condition in the cyanobacterium Synechocystis sp. PCC 6803. Journal Of Biological Chemistry 280: 22191-22197. (Pubitemid 40827875)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.23 , pp. 22191-22197
    • Fujimori, T.1    Hihara, Y.2    Sonoike, K.3
  • 54
    • 51549095034 scopus 로고    scopus 로고
    • The high light-inducible polypeptides stabilize trimeric photosystem I complex under high light conditions in Synechocystis PCC 6803
    • DOI 10.1104/pp.108.121087
    • Wang Q, Jantaro S, Lu B, Majeed W, Bailey M, et al. (2008) The High Light-Inducible Polypeptides Stabilize Trimeric Photosystem I Complex under High Light Conditions in Synechocystis PCC 6803. Plant Physiology 147: 1239-1250. (Pubitemid 352844282)
    • (2008) Plant Physiology , vol.147 , Issue.3 , pp. 1239-1250
    • Wang, Q.1    Jantaro, S.2    Lu, B.3    Majeed, W.4    Bailey, M.5    He, Q.6
  • 55
    • 84866931878 scopus 로고    scopus 로고
    • The antisense RNA As1-flv4 in the Cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply
    • Eisenhut M, Georg J, Klahn S, Sakurai I, Mustila H, et al. (2012) The antisense RNA As1-flv4 in the Cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply. J Biol Chem 287: 33153-33162.
    • (2012) J Biol Chem , vol.287 , pp. 33153-33162
    • Eisenhut, M.1    Georg, J.2    Klahn, S.3    Sakurai, I.4    Mustila, H.5
  • 56
    • 38049182828 scopus 로고    scopus 로고
    • A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria
    • Voss B, Gierga G, Axmann IM, Hess WR (2007) A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria. BMC Genomics 8: 375.
    • (2007) BMC Genomics , vol.8 , pp. 375
    • Voss, B.1    Gierga, G.2    Axmann, I.M.3    Hess, W.R.4
  • 58
    • 77950914774 scopus 로고    scopus 로고
    • A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
    • Schluter JP, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, et al. (2010) A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics 11: 245.
    • (2010) BMC Genomics , vol.11 , pp. 245
    • Schluter, J.P.1    Reinkensmeier, J.2    Daschkey, S.3    Evguenieva-Hackenberg, E.4    Janssen, S.5
  • 59
    • 34247123592 scopus 로고    scopus 로고
    • Emerging plasmid-encoded antisense RNA regulated systems
    • Weaver KE (2007) Emerging plasmid-encoded antisense RNA regulated systems. Current Opinion In Microbiology 10: 110-116.
    • (2007) Current Opinion in Microbiology , vol.10 , pp. 110-116
    • Weaver, K.E.1
  • 60
    • 84855846008 scopus 로고    scopus 로고
    • Point mutations in the inc antisense RNA gene are associated with increased plasmid copy number, expression of blaCMY-2 and resistance to piperacillin/tazobactam in Escherichia coli
    • Kurpiel PM, Hanson ND (2012) Point mutations in the inc antisense RNA gene are associated with increased plasmid copy number, expression of blaCMY-2 and resistance to piperacillin/tazobactam in Escherichia coli. Journal Of Antimicrobial Chemotherapy 67: 339-345.
    • (2012) Journal of Antimicrobial Chemotherapy , vol.67 , pp. 339-345
    • Kurpiel, P.M.1    Hanson, N.D.2
  • 61
    • 78650066340 scopus 로고    scopus 로고
    • Antisense-RNA-mediated plasmid copy number control in pCG1-family plasmids, pCGR2 and pCG1, in Corynebacterium glutamicum
    • Okibe N, Suzuki N, Inui M, Yukawa H (2010) Antisense-RNA-mediated plasmid copy number control in pCG1-family plasmids, pCGR2 and pCG1, in Corynebacterium glutamicum. Microbiology 156: 3609-3623.
    • (2010) Microbiology , vol.156 , pp. 3609-3623
    • Okibe, N.1    Suzuki, N.2    Inui, M.3    Yukawa, H.4
  • 62
    • 46249094239 scopus 로고    scopus 로고
    • The Chlamydia trachomatis plasmid is a transcriptional regulator of chromosomal genes and a virulence factor
    • Carlson JH, Whitmire WM, Crane DD, Wicke L, Virtaneva K, et al. (2008) The Chlamydia trachomatis plasmid is a transcriptional regulator of chromosomal genes and a virulence factor. Infection And Immunity 76: 2273-2283.
    • (2008) Infection and Immunity , vol.76 , pp. 2273-2283
    • Carlson, J.H.1    Whitmire, W.M.2    Crane, D.D.3    Wicke, L.4    Virtaneva, K.5
  • 63
    • 34250709662 scopus 로고    scopus 로고
    • Target identification of small noncoding RNAs in bacteria
    • DOI 10.1016/j.mib.2007.06.001, PII S1369527407000616
    • Vogel J, Wagner EG (2007) Target identification of small noncoding RNAs in bacteria. Current Opinion In Microbiology 10: 262-270. (Pubitemid 46963091)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.3 , pp. 262-270
    • Vogel, J.1    Wagner, E.G.H.2
  • 64
    • 80053019485 scopus 로고    scopus 로고
    • Regulation by small RNAs in bacteria: Expanding frontiers
    • Storz G, Vogel J, Wassarman KM (2011) Regulation by small RNAs in bacteria: expanding frontiers. Molecular Cell 43: 880-891.
    • (2011) Molecular Cell , vol.43 , pp. 880-891
    • Storz, G.1    Vogel, J.2    Wassarman, K.M.3
  • 65
    • 84873504430 scopus 로고    scopus 로고
    • Post-transcriptional control of the Escherichia coli PhoQ-PhoP two-component system by multiple sRNAs involves a novel pairing region of GcvB
    • Coornaert A, Chiaruttini C, Springer M, Guillier M (2013) Post-transcriptional control of the Escherichia coli PhoQ-PhoP two-component system by multiple sRNAs involves a novel pairing region of GcvB. PLoS Genetics 9: e1003156.
    • (2013) PLoS Genetics , vol.9
    • Coornaert, A.1    Chiaruttini, C.2    Springer, M.3    Guillier, M.4
  • 66
    • 3142564584 scopus 로고    scopus 로고
    • The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
    • DOI 10.1016/j.cell.2004.06.009, PII S0092867404005732
    • Lenz DH, Mok KC, Lilley BN, Kulkarni RV, Wingreen NS, et al. (2004) The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 118: 69-82. (Pubitemid 38902815)
    • (2004) Cell , vol.118 , Issue.1 , pp. 69-82
    • Lenz, D.H.1    Mok, K.C.2    Lilley, B.N.3    Kulkarni, R.V.4    Wingreen, N.S.5    Bassler, B.L.6
  • 67
    • 0037133946 scopus 로고    scopus 로고
    • Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes
    • Wassarman KM (2002) Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes. Cell 109: 141-144.
    • (2002) Cell , vol.109 , pp. 141-144
    • Wassarman, K.M.1
  • 68
    • 52049089226 scopus 로고    scopus 로고
    • Down-regulation of outer membrane proteins by noncoding RNAs: Unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case
    • Johansen J, Eriksen M, Kallipolitis B, Valentin-Hansen P (2008) Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case. Journal Of Molecular Biology 383: 1-9.
    • (2008) Journal of Molecular Biology , vol.383 , pp. 1-9
    • Johansen, J.1    Eriksen, M.2    Kallipolitis, B.3    Valentin-Hansen, P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.