메뉴 건너뛰기




Volumn 9, Issue 3, 2014, Pages

Sequencing and characterisation of rearrangements in three S. pastorianus strains reveals the presence of chimeric genes and gives evidence of breakpoint reuse

Author keywords

[No Author keywords available]

Indexed keywords

TRANSFER RNA; EXORIBONUCLEASE; FUNGAL DNA; HEAT SHOCK PROTEIN 90; HSP82 PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN; XRN1 PROTEIN, S CEREVISIAE;

EID: 84898605087     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0092203     Document Type: Article
Times cited : (57)

References (46)
  • 1
    • 0036224855 scopus 로고    scopus 로고
    • Evidence for multiple interspecific hybridization in Saccharomyces sensu stricto species
    • DOI 10.1016/S1567-1356(01)00051-4, PII S1567135601000514
    • de Barros Lopes M, Bellon JR, Shirley NJ, Ganter PF (2002) Evidence for multiple interspecific hybridization in Saccharomyces sensu stricto species. FE (Pubitemid 34442261)
    • (2002) FEMS Yeast Research , vol.1 , Issue.4 , pp. 323-331
    • De Barros Lopes, M.1    Bellon, J.R.2    Shirley, N.J.3    Ganter, P.F.4
  • 2
    • 28044456330 scopus 로고    scopus 로고
    • Molecular genetic study of introgression between Saccharomyces bayanus and S. Cerevisiae
    • DOI 10.1002/yea.1298
    • Naumova ES, Naumov GI, Masneuf-Pomaräde I, Aigle M, Dubourdieu D (2005) Molecular genetic study of introgression between Saccharomyces bayanus and S. cerevisiae. Yeast (Chichester, England) 22: 1099-1115. (Pubitemid 41684142)
    • (2005) Yeast , vol.22 , Issue.14 , pp. 1099-1115
    • Naumova, E.S.1    Naumov, G.I.2    Masneuf-Pomarede, I.3    Aigle, M.4    Dubourdieu, D.5
  • 4
    • 0011852212 scopus 로고
    • Three newly delimited species of Saccharomyces sensu stricto
    • Martini AV, Martini A (1987) Three newly delimited species of Saccharomyces sensu stricto. Antonie van Leeuwenhoek 53: 77-84.
    • (1987) Antonie Van Leeuwenhoek , vol.53 , pp. 77-84
    • Martini, A.V.1    Martini, A.2
  • 5
    • 0031657475 scopus 로고    scopus 로고
    • New hybrids between Saccharomyces sensu stricto yeast species found among wine and cider production strains
    • Masneuf I, Hansen J, Groth C, Piskur J, Dubourdieu D (1998) New Hybrids between Saccharomyces Sensu Stricto Yeast Species Found among Wine and Cider Production Strains. Applied and Environmental Microbiology 64: 3887-3892. (Pubitemid 28462988)
    • (1998) Applied and Environmental Microbiology , vol.64 , Issue.10 , pp. 3887-3892
    • Masneuf, I.1    Hansen, J.2    Groth, C.3    Piskur, J.4    Dubourdieu, D.5
  • 6
    • 0032704161 scopus 로고    scopus 로고
    • A natural chimeric yeast containing genetic material from three species
    • Groth C, Hansen J, Piškur J (1999) A natural chimeric yeast containing genetic material from three species. International Journal of Systematic and Evolutionary Microbiology 49: 1933-1938. (Pubitemid 29519128)
    • (1999) International Journal of Systematic Bacteriology , vol.49 , Issue.4 , pp. 1933-1938
    • Groth, C.1    Hansen, J.2    Piskur, J.3
  • 7
    • 77952113728 scopus 로고    scopus 로고
    • Natural hybrids of S. Cerevisiae6s. Kudriavzevii share alleles with European wild populations of Saccharomyces kudriavzevii
    • Lopes CA, Barrio E, Querol A (2010) Natural hybrids of S. cerevisiae6S. kudriavzevii share alleles with European wild populations of Saccharomyces kudriavzevii. FEMS Yeast Research 10: 412-421.
    • (2010) FEMS Yeast Research , vol.10 , pp. 412-421
    • Lopes, C.A.1    Barrio, E.2    Querol, A.3
  • 8
    • 0028324520 scopus 로고
    • Saccharomyces carlsbergensis contains two functional MET2 alleles similar to homologues from S. Cerevisiae and S. Monacensis
    • DOI 10.1016/0378-1119(94)90727-7
    • Hansen J, Kielland-Brandt MC (1994) Saccharomyces carlsbergensis contains two functional MET2 alleles similar to homologues from S. cerevisiae and S. monacensis. Gene 140: 33-40. (Pubitemid 24082373)
    • (1994) Gene , vol.140 , Issue.1 , pp. 33-40
    • Hansen, J.1    Kielland-Brandt, M.C.2
  • 9
    • 33745164287 scopus 로고    scopus 로고
    • Pure and mixed genetic lines of Saccharomyces bayanus and Saccharomyces pastorianus and their contribution to the lager brewing strain genome
    • DOI 10.1128/AEM.02769-05
    • Rainieri S, Kodama Y, Kaneko Y, Mikata K, Nakao Y, et al. (2006) Pure and Mixed Genetic Lines of Saccharomyces bayanus and Saccharomyces pastorianus and Their Contribution to the Lager Brewing Strain Genome. Appl Environ Microbiol 72: 3968-3974. (Pubitemid 43894859)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.6 , pp. 3968-3974
    • Rainieri, S.1    Kodama, Y.2    Kaneko, Y.3    Mikata, K.4    Nakao, Y.5    Ashikari, T.6
  • 10
    • 53549098548 scopus 로고    scopus 로고
    • Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus
    • Dunn B, Sherlock G (2008) Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Res 18: 1610-1623.
    • (2008) Genome Res , vol.18 , pp. 1610-1623
    • Dunn, B.1    Sherlock, G.2
  • 12
  • 13
    • 67649602562 scopus 로고    scopus 로고
    • Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid
    • Nakao Y, Kanamori T, Itoh T, Kodama Y, Rainieri S, et al. (2009) Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid. DNA Research 16: 115-129.
    • (2009) DNA Research , vol.16 , pp. 115-129
    • Nakao, Y.1    Kanamori, T.2    Itoh, T.3    Kodama, Y.4    Rainieri, S.5
  • 14
    • 14544290992 scopus 로고    scopus 로고
    • Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex
    • DOI 10.1002/yea.1200
    • Liti G, Peruffo A, James SA, Roberts IN, Louis EJ (2005) Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex. Yeast (Chichester, England) 22: 177-192. (Pubitemid 40298148)
    • (2005) Yeast , vol.22 , Issue.3 , pp. 177-192
    • Liti, G.1    Peruffo, A.2    James, S.A.3    Roberts, I.N.4    Louis, E.J.5
  • 15
    • 3042732668 scopus 로고    scopus 로고
    • Aneuploidy and copy number breakpoints in the genome of lager yeasts mapped by microarray hybridisation
    • DOI 10.1007/s00294-004-0504-x
    • Bond U, Neal C, Donnelly D, James TC (2004) Aneuploidy and copy number breakpoints in the genome of lager yeasts mapped by microarray hybridisation. Current genetics 45: 360-370. (Pubitemid 38878482)
    • (2004) Current Genetics , vol.45 , Issue.6 , pp. 360-370
    • Bond, U.1    Neal, C.2    Donnelly, D.3    James, T.C.4
  • 16
    • 0036353403 scopus 로고    scopus 로고
    • Analysis of an inactivated Lg-FLO1 gene present in bottom-fermenting yeast
    • DOI 10.1016/S1389-1723(02)80073-1
    • Sato M, Maeba H, Watari J, Takashio M (2002) Analysis of an inactivated Lg-FLO1 gene present in bottom-fermenting yeast. Journal of bioscience and bioengineering 93: 395-398. (Pubitemid 34971758)
    • (2002) Journal of Bioscience and Bioengineering , vol.93 , Issue.4 , pp. 395-398
    • Sato, M.1    Maeba, H.2    Watari, J.3    Takashio, M.4
  • 18
    • 0034713383 scopus 로고    scopus 로고
    • Chromosomal evolution in Saccharomyces
    • DOI 10.1038/35013058
    • Fischer G, James SA, Roberts IN, Oliver SG, Louis EJ (2000) Chromosomal evolution in Saccharomyces. Nature 405: 451-454. (Pubitemid 30367420)
    • (2000) Nature , vol.405 , Issue.6785 , pp. 451-454
    • Fischer, G.1    James, S.A.2    Roberts, I.N.3    Oliver, S.G.4    Louis, E.J.5
  • 19
    • 0032992818 scopus 로고    scopus 로고
    • Multiple Ty-mediated chromosomal translocations lead to karyotype changes in a wine strain of Saccharomyces cerevisiae
    • DOI 10.1007/s004380050028
    • Rachidi N, Barre P, Blondin B (1999) Multiple Ty-mediated chromosomal translocations lead to karyotype changes in a wine strain of Saccharomyces cerevisiae. Molecular and General Genetics MGG 261: 841-850. (Pubitemid 29286764)
    • (1999) Molecular and General Genetics , vol.261 , Issue.4-5 , pp. 841-850
    • Rachidi, N.1    Barre, P.2    Blondin, B.3
  • 20
  • 21
    • 39649104571 scopus 로고    scopus 로고
    • Lager yeasts possess dynamic genomes that undergo rearrangements and gene amplification in response to stress
    • James TC, Usher J, Campbell S, Bond U (2008) Lager yeasts possess dynamic genomes that undergo rearrangements and gene amplification in response to stress. Current genetics 53: 139-152.
    • (2008) Current Genetics , vol.53 , pp. 139-152
    • James, T.C.1    Usher, J.2    Campbell, S.3    Bond, U.4
  • 22
    • 0036796474 scopus 로고    scopus 로고
    • Molecular characterization of a chromosomal rearrangement involved in the adaptie evolution of yeast strains
    • DOI 10.1101/gr.436602
    • Perez-Ortin JE, Querol A, Puig S, Barrio E (2002) Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res 12: 1533-1539. (Pubitemid 35175091)
    • (2002) Genome Research , vol.12 , Issue.10 , pp. 1533-1539
    • Perez-Ortin, J.E.1    Querol, A.2    Puig, S.3    Barrio, E.4
  • 23
    • 0347361696 scopus 로고    scopus 로고
    • Genome-Wide Amplifications Caused by Chromosomal Rearrangements Play a Major Role in the Adaptive Evolution of Natural Yeast
    • Infante JJ, Dombek KM, Rebordinos L, Cantoral JM, Young ET (2003) Genome-Wide Amplifications Caused by Chromosomal Rearrangements Play a Major Role in the Adaptive Evolution of Natural Yeast. Genetics 165: 1745-1759. (Pubitemid 38040267)
    • (2003) Genetics , vol.165 , Issue.4 , pp. 1745-1759
    • Infante, J.J.1    Dombek, K.M.2    Rebordinos, L.3    Cantoral, J.M.4    Young, E.T.5
  • 24
    • 84873521620 scopus 로고    scopus 로고
    • Dynamic large-scale chromosomal rearrangements fuel rapid adaptation in yeast populations
    • Chang S-L, Lai H-Y, Tung S-Y, Leu J-Y (2013) Dynamic Large-Scale Chromosomal Rearrangements Fuel Rapid Adaptation in Yeast Populations. PLoS Genet 9: e1003232.
    • (2013) PLoS Genet , vol.9
    • Chang, S.-L.1    Lai, H.-Y.2    Tung, S.-Y.3    Leu, J.-Y.4
  • 26
    • 43549120083 scopus 로고    scopus 로고
    • The inheritance of mtDNA in lager brewing strains
    • DOI 10.1111/j.1567-1364.2008.00363.x
    • Rainieri S, Kodama Y, Nakao Y, Pulvirenti A, Giudici P (2008) The inheritance of mtDNA in lager brewing strains. FEMS Yeast Research 8: 586-596. (Pubitemid 351678646)
    • (2008) FEMS Yeast Research , vol.8 , Issue.4 , pp. 586-596
    • Rainieri, S.1    Kodama, Y.2    Nakao, Y.3    Pulvirenti, A.4    Giudici, P.5
  • 29
    • 77953139551 scopus 로고    scopus 로고
    • Rapid expansion and functional divergence of subtelomeric gene families in yeasts
    • Brown C, Murray A, Verstrepen K (2010) Rapid expansion and functional divergence of subtelomeric gene families in yeasts. Curr Biol 20: 895-903.
    • (2010) Curr Biol , vol.20 , pp. 895-903
    • Brown, C.1    Murray, A.2    Verstrepen, K.3
  • 30
    • 84859513909 scopus 로고    scopus 로고
    • HGT turbulence: Confounding phylogenetic influence of duplicative horizontal transfer and differential gene conversion
    • Hao W, Palmer JD (2011) HGT turbulence: Confounding phylogenetic influence of duplicative horizontal transfer and differential gene conversion. Mob Genet Elements 1: 256-261.
    • (2011) Mob Genet Elements , vol.1 , pp. 256-261
    • Hao, W.1    Palmer, J.D.2
  • 31
    • 84878113118 scopus 로고    scopus 로고
    • Inferring ancient divergences requires genes with strong phylogenetic signals
    • Salichos L, Rokas A (2013) Inferring ancient divergences requires genes with strong phylogenetic signals. Nature 497: 327-331.
    • (2013) Nature , vol.497 , pp. 327-331
    • Salichos, L.1    Rokas, A.2
  • 32
    • 67649615934 scopus 로고    scopus 로고
    • Recombination between homoeologous chromosomes of lager yeasts leads to loss of function of the hybrid GPH1 gene
    • Usher J, Bond U (2009) Recombination between homoeologous chromosomes of lager yeasts leads to loss of function of the hybrid GPH1 gene. Applied and environmental microbiology 75: 4573-4579.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 4573-4579
    • Usher, J.1    Bond, U.2
  • 33
    • 84875989311 scopus 로고    scopus 로고
    • Recurrent Rearrangement during Adaptive Evolution in an Interspecific Yeast Hybrid Suggests a Model for Rapid Introgression
    • Dunn B, Paulish T, Stanbery A, Piotrowski J, Koniges G, et al. (2013) Recurrent Rearrangement during Adaptive Evolution in an Interspecific Yeast Hybrid Suggests a Model for Rapid Introgression. PLoS Genet 9: e1003366.
    • (2013) PLoS Genet , vol.9
    • Dunn, B.1    Paulish, T.2    Stanbery, A.3    Piotrowski, J.4    Koniges, G.5
  • 34
    • 0034028905 scopus 로고    scopus 로고
    • Glucose limitation induces GCN4 translation by activation of Gcn2 protein kinase
    • DOI 10.1128/MCB.20.8.2706-2717.2000
    • Yang R, Wek SA, Wek RC (2000) Glucose limitation induces GCN4 translation by activation of Gcn2 protein kinase. Mol Cell Biol 20: 2706-2717. (Pubitemid 30183489)
    • (2000) Molecular and Cellular Biology , vol.20 , Issue.8 , pp. 2706-2717
    • Yang, R.1    Wek, S.A.2    Wek, R.C.3
  • 37
    • 66049138940 scopus 로고    scopus 로고
    • Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories
    • Larkin DM, Pape G, Donthu R, Auvil L, Welge M, et al. (2009) Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories. Genome Res 19: 770-777.
    • (2009) Genome Res , vol.19 , pp. 770-777
    • Larkin, D.M.1    Pape, G.2    Donthu, R.3    Auvil, L.4    Welge, M.5
  • 40
    • 34249697132 scopus 로고    scopus 로고
    • Is mammalian chromosomal evolution driven by regions of genome fragility?
    • Ruiz-Herrera A, Castresana J, Robinson TJ (2006) Is mammalian chromosomal evolution driven by regions of genome fragility? Genome Biol 7.
    • (2006) Genome Biol , vol.7
    • Ruiz-Herrera, A.1    Castresana, J.2    Robinson, T.J.3
  • 41
    • 77955147087 scopus 로고    scopus 로고
    • Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila
    • von Grotthuss M, Ashburner M, Ranz JM (2010) Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila. Genome Res 20: 1084-1096.
    • (2010) Genome Res , vol.20 , pp. 1084-1096
    • Von Grotthuss, M.1    Ashburner, M.2    Ranz, J.M.3
  • 42
    • 0020541955 scopus 로고
    • The double-strand-break repair model for recombination
    • Szostak JW, Orr-Weaver TL, Rothstein RJ, Stahl FW (1983) The double-strand-break repair model for recombination. Cell 33: 25-35. (Pubitemid 13096431)
    • (1983) Cell , vol.33 , Issue.1 , pp. 25-35
    • Szostak, J.W.1    Orr Weaver, T.L.2    Rothstein, R.J.3
  • 43
    • 78650689283 scopus 로고    scopus 로고
    • Competitive repair by naturally dispersed repetitive dna during non-allelic homologous recombination
    • Hoang ML, Tan FJ, Lai DC, Celniker SE, Hoskins RA, et al. (2010) Competitive Repair by Naturally Dispersed Repetitive DNA during Non-Allelic Homologous Recombination. PLoS Genet 6: e1001228.
    • (2010) PLoS Genet , vol.6
    • Hoang, M.L.1    Tan, F.J.2    Lai, D.C.3    Celniker, S.E.4    Hoskins, R.A.5
  • 45
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • DOI 10.1038/nature01644
    • Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423: 241-254. (Pubitemid 40852689)
    • (2003) Nature , vol.423 , Issue.6937 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.