LPmerge: An R package for merging genetic maps by linear programming

Bioinformatics

Volumn 30, Issue 11, 2014, Pages 1623-1624

  Endelman, Jeffrey B ^a,b,c   Plomion, Christophe ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UMR 1202 BIOGECO   (France)

^c UNIVERSITÉ DE BORDEAUX   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CHROMOSOME MAP; COMPUTER PROGRAM; GENETIC LINKAGE; METHODOLOGY; SYSTEM ANALYSIS;

ALGORITHMS; CHROMOSOME MAPPING; GENETIC LINKAGE; PROGRAMMING, LINEAR; SOFTWARE;

EID: 84898601411     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu091     Document Type: Article

References (10)

1. Amaldi, E. and Kann, V. (1995) The complexity and approximability of finding maximum feasible subsystems of linear relations. Theor. Comput. Sci., 147, 181-210
2. Chinneck, J.W. (2001) Fast heuristics for the maximum feasible subsystem problem. INFORMS J. Comput., 13, 210-223
3. Endelman, J.B. (2011) New algorithm improves fine structure of the barley consensus SNP map. BMC Genomics, 12, 407
4. Gautami, B et al. (2012) An international reference consensus genetic map with 897 marker loci based on 11 mapping populations for tetraploid groundnut (Arachis hypogaea L.). PLoS One, 7, e41213
5. Khan, M.A. et al. (2012) A multi-population consensus genetic map reveals inconsistent marker order among maps likely attributed to structural variations in the apple genome. PLoS One, 7, e47864
6. Munöz-Amatriaín, M. et al. (2011) An improved consensus linkage map of barley based on flow-sorted chromosomes and single nucleotide polymorphism markers. Plant Genome, 4, 238-249
7. Ronin, Y. et al. (2012) Two-phase analysis in consensus genetic mapping. G3 (Bethesda), 2, 537-549
8. Van Ooijen, J.W. (2006) JoinMap 4: Software for the calculation of genetic linkage maps in experimental populations. Kyazma B.V., Wageningen, The Netherlands
9. Wenzl, P. et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC Genomics, 7, 206
10. Wu, Y. et al. (2011) Accurate construction of consensus genetic maps via integer linear programming. IEEE/ACM Trans. Comput. Biol. Bioinform., 8, 381-394