메뉴 건너뛰기




Volumn 406, Issue 11, 2014, Pages 2603-2611

Detecting authorized and unauthorized genetically modified organisms containing vip3A by real-time PCR and next-generation sequencing

Author keywords

GMO; NGS; qPCR; SiteFinding PCR; UGMO; Vegetative insecticidal protein 3A

Indexed keywords

GENE ENCODING; SCREENING;

EID: 84898025946     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-014-7667-1     Document Type: Article
Times cited : (66)

References (24)
  • 1
    • 79955565637 scopus 로고    scopus 로고
    • Development and validation of real-time PCR screening methods for detection of cry1A.105 and cry2Ab2 genes in genetically modified organisms
    • 10.1007/s00216-011-4875-9 1:CAS:528:DC%2BC3MXjvVOhurs%3D 10.1007/s00216-011-4875-9
    • Dinon AZ, Prins TW, Dijk JP, Arisi AM, Scholtens IMJ, Kok EJ (2011) Development and validation of real-time PCR screening methods for detection of cry1A.105 and cry2Ab2 genes in genetically modified organisms. Anal Bioanal Chem 400(5):1433-1442. doi: 10.1007/s00216-011-4875-9
    • (2011) Anal Bioanal Chem , vol.400 , Issue.5 , pp. 1433-1442
    • Dinon, A.Z.1    Prins, T.W.2    Dijk, J.P.3    Arisi, A.M.4    Scholtens, I.M.J.5    Kok, E.J.6
  • 2
    • 84867719581 scopus 로고    scopus 로고
    • Detecting un-authorized genetically modified organisms (GMOs) and derived materials (special issue on ACB 2011)
    • 10.1016/j.biotechadv.2012.01.024 1:CAS:528:DC%2BC38XhsFKgu7%2FK 10.1016/j.biotechadv.2012.01.024
    • Holst-Jensen A, Bertheau Y, de Loose M, Grohmann L, Hamels S, Hougs L, Morisset D, Pecoraro S, Pla M, den Bulcke MV, Wulff D (2012) Detecting un-authorized genetically modified organisms (GMOs) and derived materials (special issue on ACB 2011). Biotechnol Adv 30(6):1318-1335. doi: 10.1016/j.biotechadv.2012.01.024
    • (2012) Biotechnol Adv , vol.30 , Issue.6 , pp. 1318-1335
    • Holst-Jensen, A.1    Bertheau, Y.2    De Loose, M.3    Grohmann, L.4    Hamels, S.5    Hougs, L.6    Morisset, D.7    Pecoraro, S.8    Pla, M.9    Den Bulcke, M.V.10    Wulff, D.11
  • 3
    • 70350675163 scopus 로고    scopus 로고
    • Real-time PCR-based ready-to-use multi-target analytical system for GMO detection
    • 10.1007/s12161-009-9093-0 10.1007/s12161-009-9093-0
    • Querci M, Foti N, Bogni A, Kluga L, Broll H, Eede G (2009) Real-time PCR-based ready-to-use multi-target analytical system for GMO detection. Food Anal Methods 2(4):325-336. doi: 10.1007/s12161-009-9093-0
    • (2009) Food Anal Methods , vol.2 , Issue.4 , pp. 325-336
    • Querci, M.1    Foti, N.2    Bogni, A.3    Kluga, L.4    Broll, H.5    Eede, G.6
  • 4
    • 77951296355 scopus 로고    scopus 로고
    • A practical approach to screen for authorised and unauthorised genetically modified plants
    • 10.1007/s00216-009-3173-2 1:CAS:528:DC%2BD1MXhtlWnt7%2FJ 10.1007/s00216-009-3173-2
    • Waiblinger H-U, Grohmann L, Mankertz J, Engelbert D, Pietsch K (2010) A practical approach to screen for authorised and unauthorised genetically modified plants. Anal Bioanal Chem 396(6):2065-2072. doi: 10.1007/s00216-009- 3173-2
    • (2010) Anal Bioanal Chem , vol.396 , Issue.6 , pp. 2065-2072
    • Waiblinger, H.-U.1    Grohmann, L.2    Mankertz, J.3    Engelbert, D.4    Pietsch, K.5
  • 6
    • 60349125203 scopus 로고    scopus 로고
    • Development of an event-specific real-time PCR detection method for the transgenic Bt rice line KMD1
    • 10.1007/s00217-008-0981-0 1:CAS:528:DC%2BD1MXhvVCmur4%3D 10.1007/s00217-008-0981-0
    • Babekova R, Funk T, Pecoraro S, Engel K-H, Busch U (2009) Development of an event-specific real-time PCR detection method for the transgenic Bt rice line KMD1. Eur Food Res Technol 228(5):707-716. doi: 10.1007/s00217-008-0981-0
    • (2009) Eur Food Res Technol , vol.228 , Issue.5 , pp. 707-716
    • Babekova, R.1    Funk, T.2    Pecoraro, S.3    Engel, K.-H.4    Busch, U.5
  • 7
    • 27144526458 scopus 로고    scopus 로고
    • SiteFinding-PCR: A simple and efficient PCR method for chromosome walking
    • 10.1093/nar/gni124 10.1093/nar/gni124
    • Tan G, Gao Y, Shi M, Zhang X, He S, Chen Z, An C (2005) SiteFinding-PCR: a simple and efficient PCR method for chromosome walking. Nucleic Acids Res 33(13):e122. doi: 10.1093/nar/gni124
    • (2005) Nucleic Acids Res , vol.33 , Issue.13 , pp. 122
    • Tan, G.1    Gao, Y.2    Shi, M.3    Zhang, X.4    He, S.5    Chen, Z.6    An, C.7
  • 8
    • 0032892696 scopus 로고    scopus 로고
    • Specific primers for the detection of vip3A insecticidal gene within a Bacillus thuringiensis collection
    • 10.1046/j.1365-2672.1999.00536.x 1:CAS:528:DyaK1MXjslyjtLY%3D 10.1046/j.1365-2672.1999.00536.x
    • Rice WC (1999) Specific primers for the detection of vip3A insecticidal gene within a Bacillus thuringiensis collection. Lett Appl Microbiol 28(5):378-382. doi: 10.1046/j.1365-2672.1999.00536.x
    • (1999) Lett Appl Microbiol , vol.28 , Issue.5 , pp. 378-382
    • Rice, W.C.1
  • 9
    • 84898044580 scopus 로고    scopus 로고
    • Biosafety Clearing-House Accessed 6 Aug 2013
    • Biosafety Clearing-House (2013) http://bch.cbd.int/database/lmo/ decisions.shtml?documentid=14992. Accessed 6 Aug 2013
    • (2013)
  • 12
    • 77951299065 scopus 로고    scopus 로고
    • Absolute quantification of genetically modified MON810 maize (Zea mays L.) by digital polymerase chain reaction
    • 10.1007/s00216-009-3200-3 1:CAS:528:DC%2BC3cXivFKktbw%3D 10.1007/s00216-009-3200-3
    • Corbisier P, Bhat S, Partis L, Rui Dan Xie V, Emslie K (2010) Absolute quantification of genetically modified MON810 maize (Zea mays L.) by digital polymerase chain reaction. Anal Bioanal Chem 396(6):2143-2150. doi: 10.1007/s00216-009-3200-3
    • (2010) Anal Bioanal Chem , vol.396 , Issue.6 , pp. 2143-2150
    • Corbisier, P.1    Bhat, S.2    Partis, L.3    Rui Dan Xie, V.4    Emslie, K.5
  • 13
    • 77951297555 scopus 로고    scopus 로고
    • Increased efficacy for in-house validation of real-time PCR GMO detection methods
    • 10.1007/s00216-009-3315-6 1:CAS:528:DC%2BD1MXhsFCgsb%2FP 10.1007/s00216-009-3315-6
    • Scholtens IMJ, Kok EJ, Hougs L, Molenaar B, Thissen JTNM, Voet H (2010) Increased efficacy for in-house validation of real-time PCR GMO detection methods. Anal Bioanal Chem 396(6):2213-2227. doi: 10.1007/s00216-009-3315-6
    • (2010) Anal Bioanal Chem , vol.396 , Issue.6 , pp. 2213-2227
    • Scholtens, I.M.J.1    Kok, E.J.2    Hougs, L.3    Molenaar, B.4    Thissen, J.5    Voet, H.6
  • 14
    • 51249171246 scopus 로고
    • Nuclear DNA content of some important plant species
    • 10.1007/bf02672069 1:CAS:528:DyaK38XhslSjurY%3D 10.1007/BF02672069
    • Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Report 9(3):208-218. doi: 10.1007/bf02672069
    • (1991) Plant Mol Biol Report , vol.9 , Issue.3 , pp. 208-218
    • Arumuganathan, K.1    Earle, E.D.2
  • 17
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • 10.1093/bioinformatics/btr026 1:CAS:528:DC%2BC3MXjt1Sksrg%3D 10.1093/bioinformatics/btr026
    • Schmieder R, Edwards R (2011) Quality control and preprocessing of metagenomic datasets. Bioinformatics 27(6):863-864. doi: 10.1093/bioinformatics/ btr026
    • (2011) Bioinformatics , vol.27 , Issue.6 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 18
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • 10.1101/gr.074492.107 1:CAS:528:DC%2BD1cXlslChsLg%3D 10.1101/gr.074492. 107
    • Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18(5):821-829. doi: 10.1101/gr.074492.107
    • (2008) Genome Res , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 19
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • 10.1186/gb-2009-10-3-r25
    • Langmead B, Trapnell C, Pop M, Salzberg S (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10(3):R25
    • (2009) Genome Biol , vol.10 , Issue.3 , pp. 25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.4
  • 20
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • 10.1093/bioinformatics/btq033 1:CAS:528:DC%2BC3cXivFGkurc%3D 10.1093/bioinformatics/btq033
    • Quinlan AR, Hall IM (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26(6):841-842. doi: 10.1093/bioinformatics/btq033
    • (2010) Bioinformatics , vol.26 , Issue.6 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 21
    • 84865591846 scopus 로고    scopus 로고
    • A tale of three next generation sequencing platforms: Comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
    • 1:CAS:528:DC%2BC38Xhslaju7zI 10.1186/1471-2164-13-341
    • Quail M, Smith M, Coupland P, Otto T, Harris S, Connor T, Bertoni A, Swerdlow H, Gu Y (2012) A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics 13(1):341
    • (2012) BMC Genomics , vol.13 , Issue.1 , pp. 341
    • Quail, M.1    Smith, M.2    Coupland, P.3    Otto, T.4    Harris, S.5    Connor, T.6    Bertoni, A.7    Swerdlow, H.8    Gu, Y.9
  • 23
    • 84887320262 scopus 로고    scopus 로고
    • Next-generation sequencing as a tool for detailed molecular characterisation of genomic insertions and flanking regions in genetically modified plants: A pilot study using a rice event unauthorised in the EU
    • 10.1007/s12161-013-9673-x 10.1007/s12161-013-9673-x
    • Wahler D, Schauser L, Bendiek J, Grohmann L (2013) Next-generation sequencing as a tool for detailed molecular characterisation of genomic insertions and flanking regions in genetically modified plants: a pilot study using a rice event unauthorised in the EU. Food Anal Methods 6:1718-1727. doi: 10.1007/s12161-013-9673-x
    • (2013) Food Anal Methods , vol.6 , pp. 1718-1727
    • Wahler, D.1    Schauser, L.2    Bendiek, J.3    Grohmann, L.4
  • 24
    • 84885112397 scopus 로고    scopus 로고
    • Characterization of GM events by insert knowledge adapted re-sequencing approaches
    • 10.1038/srep02839
    • Yang L, Wang C, Holst-Jensen A, Morisset D, Lin Y, Zhang D (2013) Characterization of GM events by insert knowledge adapted re-sequencing approaches. Sci Rep 3:2839. doi: 10.1038/srep02839
    • (2013) Sci Rep , vol.3 , pp. 2839
    • Yang, L.1    Wang, C.2    Holst-Jensen, A.3    Morisset, D.4    Lin, Y.5    Zhang, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.