Celeribacter marinus sp. nov., isolated from coastal seawater

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 4, 2014, Pages 1323-1327

  Baek, Kiwoon ^a   Choi, Ahyoung ^a   Kang, Ilnam ^a   Cho, Jang Cheon ^a  

^a Inha University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ALKALINE PHOSPHATASE; ALPHA LEVO FUCOSIDASE; AMPICILLIN; ARBUTIN; ARGININE DEIMINASE; ARYL ACYLAMIDASE; BETA GALACTOSIDASE; CARDIOLIPIN; CATALASE; CELLULOSE; CHLORAMPHENICOL; ESCULIN; ESTERASE; FERRIC CITRATE; GENTAMICIN; GLYCEROL; KANAMYCIN; NALIDIXIC ACID; OXIDOREDUCTASE; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLGLYCEROL; RIFAMPICIN; RNA 16S; SEA WATER; SUCROSE; TETRACYCLINE; TREHALOSE; TRIACYLGLYCEROL LIPASE; UBIDECARENONE; VANCOMYCIN;

ANAEROBIC GROWTH; ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATE; CELERIBACTER BAEKDONENSIS; CELERIBACTER MARINUS; CELERIBACTER NEPTUNIUS; CELL SIZE; CELL STRUCTURE; DNA DNA HYBRIDIZATION; ENZYME ACTIVITY; GENE SEQUENCE; HYDROLYSIS; KOREA; LIPID COMPOSITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RHODOBACTERACEAE;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHOSPHOLIPIDS; PHYLOGENY; REPUBLIC OF KOREA; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; UBIQUINONE;

EID: 84897945643     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.060673-0     Document Type: Article

References (21)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Cho, J.-C. & Giovannoni, S. J. (2004). Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria. Appl Environ Microbiol 70, 432-440.
3. Choo, Y.-J., Lee, K., Song, J. & Cho, J.-C. (2007). Puniceicoccus vermicola gen. nov., sp. nov., a novel marine bacterium, and description of Puniceicoccaceae fam. nov., Puniceicoccales ord. nov., Opitutaceae fam. nov., Opitutales ord. nov. and Opitutae classis nov. in the phylum 'Verrucomicrobia'. Int J Syst Evol Microbiol 57, 532-537.
4. Collins, M. (1985). Analysis of isoprenoid quinones. Methods Microbiol 18, 329-366.
5. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
6. Fitch, W. M. (1971). Toward defining the course of evolution: Minimum change for a specific tree topology. Syst Biol 20, 406-416.
7. Giovannoni, S. J. & Rappé, M. S. (2000). Evolution, diversity and molecular ecology of marine prokaryotes. In Microbial Ecology of the Oceans, pp. 47-84. Edited by D. L. Kirchman. New York: Wiley.
8. Ivanova, E. P., Webb, H., Christen, R., Zhukova, N. V., Kurilenko, V. V., Kalinovskaya, N. I. & Crawford, R. J. (2010). Celeribacter neptunius gen. nov., sp. nov., a new member of the class Alphaproteobacteria. Int J Syst Evol Microbiol 60, 1620-1625.
9. Jorgensen, J. H., Turnidge, J. D. & Washington, J. A. (1999). Antibacterial susceptibility tests: dilution and disk diffusion methods. In Manual of Clinical Microbiology, pp. 1526-1543. Edited by P. R. Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover & R. H. Yolken. Washington, DC: American Society for Microbiology.
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-32. Edited by H. N. Munro. New York: Academic Press.
11. Kang, I., Jang, H., Oh, H.-M. & Cho, J.-C. (2012). Complete genome sequence of Celeribacter bacteriophage P12053L. J Virol 86, 8339-8340.
12. Kim, O. S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S., Lee, J.-H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
13. Lee, S.-Y., Park, S., Oh, T. K. & Yoon, J. H. (2012). Celeribacter baekdonensis sp. nov., isolated from seawater, and emended description of the genus Celeribacter Ivanova et al. 2010. Int J Syst Evol Microbiol 62, 1359-1364.
14. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
15. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
17. Pruesse, E., Peplies, J. & Glöckner, F. O. (2012). SINA: accurate highthroughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28, 1823-1829.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
20. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
21. Tindall, B. J., Sikorski, J., Smibert, R. A. & Krieg, N. R. (2007). Phenotypic characterization and the principles of comparative systematics. In Methods for General and Molecular Microbiology, pp. 330-393. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. A. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology.