Differential host cell gene expression and regulation of cell cycle progression by nonstructural protein 11 of porcine reproductive and respiratory syndrome virus

BioMed Research International

Volumn 2014, Issue , 2014, Pages

  Sun, Yan ^a,b   Li, Dong ^a   Giri, Sumanprava ^c   Prasanth, Supriya G ^c   Yoo, Dongwan ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

^c UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BETA INTERFERON; CELL DNA; COMPLEMENT; ENHANCEOSOME; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; INTERFERON; INTERFERON REGULATORY FACTOR 3; MITOGEN ACTIVATED PROTEIN KINASE; NONSTRUCTURAL PROTEIN 11; TRANSCRIPTION FACTOR AP 1; TRANSCRIPTOME; UBIQUITIN; UNCLASSIFIED DRUG; VIRUS PROTEIN; CELL CYCLE PROTEIN;

ANIMAL CELL; ARTERIVIRUS; ARTICLE; CELL CYCLE G1 PHASE; CELL CYCLE PROGRESSION; CELL CYCLE S PHASE; COMPLEMENT SYSTEM; CONTROLLED STUDY; DNA REPLICATION; DNA SYNTHESIS; DOWN REGULATION; ENZYME ACTIVITY; EXON; FLOW CYTOMETRY; GENE CONTROL; GENE EXPRESSION; GENETIC TRANSFECTION; HOST CELL; IMMUNOPRECIPITATION; IN VITRO STUDY; LYSOSOME; NONHUMAN; PROTEIN EXPRESSION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; S PHASE CELL CYCLE CHECKPOINT; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION; VIRUS CELL INTERACTION; ANIMAL; BIOSYNTHESIS; CELL CYCLE; CELL LINE; GENE EXPRESSION REGULATION; GENETICS; PATHOGENICITY; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME; SWINE; VIROLOGY; VIRUS REPLICATION;

ANIMALS; CELL CYCLE; CELL CYCLE PROTEINS; CELL LINE; GENE EXPRESSION REGULATION, VIRAL; INTERFERON-BETA; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME; PORCINE RESPIRATORY AND REPRODUCTIVE SYNDROME VIRUS; SWINE; VIRAL NONSTRUCTURAL PROTEINS; VIRUS REPLICATION;

EID: 84897846737     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2014/430508     Document Type: Article

References (49)

1. Neumann E. J., Kliebenstein J. B., Johnson C. D., Mabry J. W., Bush E. J., Seitzinger A. H., Green A. L., Zimmerman J. J., Assessment of the economic impact of porcine reproductive and respiratory syndrome on swine production in the United States. Journal of the American Veterinary Medical Association 2005 227 3 385 392 2-s2.0-23244461281 10.2460/javma.2005.227.385 (Pubitemid 41098522)
2. King A. M. Q., Adams M. J., Carstens E. B., Lefkovitz E. J., Virus Taxonomy Ninth International Report of the International Committee on Taxonomy of Viruses 2012 Elsevier Academic Press
3. Conzelmann K. K., Visser N., van Woensel P., Thiel H. J., Molecular characterization of porcine reproductive and respiratory syndrome virus, a member of the arterivirus group. Virology 1993 193 1 329 339 2-s2.0-0027254342 10.1006/viro.1993.1129
4. Gorbalenya A. E., Enjuanes L., Ziebuhr J., Snijder E. J., Nidovirales: evolving the largest RNA virus genome. Virus Research 2006 117 1 17 37 2-s2.0-33645093947 10.1016/j.virusres.2006.01.017
5. Meulenberg J. J. M., Hulst M. M., de Meijer E. J., Moonen P. L. J. M., den Besten A., de Kluyver E. P., Wensvoort G., Moormann R. J. M., Lelystad virus, the causative agent of porcine epidemic abortion and respiratory syndrome (PEARS), is related to LDV and EAV. Virology 1993 192 1 62 72 2-s2.0-0027249901 10.1006/viro.1993.1008
6. Snijder E. J., The arterivirus replicase: the road from RNA to protein(s), and back again. Advances in Experimental Medicine and Biology 1998 440 97 108 2-s2.0-0031754151 (Pubitemid 28405878)
7. Allende R., Lewis T. L., Lu Z., Rock D. L., Kutish G. F., Ali A., Doster A. R., Osorio F. A., North American and European porcine reproductive and respiratory syndrome viruses differ in non-structural protein coding regions. Journal of General Virology 1999 80 2 307 315 2-s2.0-0033008414 (Pubitemid 29095189)
8. Nelsen C. J., Murtaugh M. P., Faaberg K. S., Porcine reproductive and respiratory syndrome virus comparison: divergent evolution on two continents. Journal of Virology 1999 73 1 270 280 2-s2.0-0032889516 (Pubitemid 28565369)
9. Firth A. E., Zevenhoven-Dobbe J. C., Wills N. M., Go Y. Y., Balasuriya U. B. R., Atkins J. F., Snijder E. J., Posthuma C. C., Discovery of a small arterivirus gene that overlaps the gp5 coding sequence and is important for virus production. Journal of General Virology 2011 92 5 1097 1106 2-s2.0-79955571593 10.1099/vir.0.029264-0
10. Johnson C. R., Griggs T. F., Gnanandarajah J., Murtaugh M. P., Novel structural protein in porcine reproductive and respiratory syndrome virus encoded by an alternative orf5 present in all arteriviruses. Journal of General Virology 2011 92 5 1107 1116 2-s2.0-79955574664 10.1099/vir.0.030213-0
11. den Boon J. A., Snijder E. J., Chirnside E. D., de Vries A. A. F., Horzinek M. C., Spaan W. J. M., Equine arteritis virus is not a togavirus but belongs to the coronaviruslike superfamily. Journal of Virology 1991 65 6 2910 2920 2-s2.0-0026040484
12. Fang Y., Snijder E. J., The PRRSV replicase: exploring the multifunctionality of an intriguing set of nonstructural proteins. Virus Research 2010 154 1-2 61 76 2-s2.0-78649322018 10.1016/j.virusres.2010.07.030
13. Wootton S., Yoo D., Rogan D., Full-length sequence of a Canadian porcine reproductive and respiratory syndrome virus (PRRSV) isolate. Archives of Virology 2000 145 11 2297 2323 2-s2.0-0034520364 10.1007/s007050070022 (Pubitemid 32040090)
14. Ivanov K. A., Hertzig T., Rozanov M., Bayer S., Thiel V., Gorbalenya A. E., Ziebuhr J., Major genetic marker of nidoviruses encodes a replicative endoribonuclease. Proceedings of the National Academy of Sciences of the United States of America 2004 101 34 12694 12699 2-s2.0-4344592314 10.1073/pnas. 0403127101 (Pubitemid 39122085)
15. Nedialkova D. D., Ulferts R., van den Born E., Lauber C., Gorbalenya A. E., Ziebuhr J., Snijder E. J., Biochemical characterization of arterivirus nonstructural protein 11 reveals the nidovirus-wide conservation of a replicative endoribonuclease. Journal of Virology 2009 83 11 5671 5682 2-s2.0-66149091584 10.1128/JVI.00261-09
16. Posthuma C. C., Nedialkova D. D., Zevenhoven-Dobbe J. C., Blokhuis J. H., Gorbalenya A. E., Snijder E. J., Site-directed mutagenesis of the nidovirus replicative endoribonuclease NendoU exerts pleiotropic effects on the arterivirus life cycle. Journal of Virology 2006 80 4 1653 1661 2-s2.0-32444450251 10.1128/JVI.80.4.1653-1661.2006 (Pubitemid 43228707)
17. Yoo D., Song C., Sun Y., Du Y., Kim O., Liu H. C., Modulation of host cell responses and evasion strategies for porcine reproductive and respiratory syndrome virus. Virus Research 2010 154 1-2 48 60 2-s2.0-78649288595 10.1016/j.virusres.2010.07.019
18. Beura L. K., Sarkar S. N., Kwon B., Subramaniam S., Jones C., Pattnaik A. K., Osorio F. A., Porcine reproductive and respiratory syndrome virus nonstructural protein 1 β modulates host innate immune response by antagonizing IRF3 activation. Journal of Virology 2010 84 3 1574 1584 2-s2.0-73949087536 10.1128/JVI.01326-09
19. Xiao S., Mo D., Wang Q., Jia J., Qin L., Yu X., Niu Y., Zhao X., Liu X., Chen Y., Aberrant host immune response induced by highly virulent PRRSV identified by digital gene expression tag profiling. BMC Genomics 2010 11 1, article 544 2-s2.0-77957356729 10.1186/1471-2164-11-544
20. Zhou P., Zhai S., Zhou X., Lin P., Jiang T., Hu X., Jiang Y., Wu B., Zhang Q., Xu X., Li J. P., Liu B., Molecular characterization of transcriptome-wide interactions between highly pathogenic porcine reproductive and respiratory syndrome virus and porcine alveolar macrophages in vivo. International Journal of Biological Sciences 2011 7 7 947 959 2-s2.0-80052765126
21. Kim H. S., Kwang J., Yoon I. J., Joo H. S., Frey M. L., Enhanced replication of porcine reproductive and respiratory syndrome (PRRS) virus in a homogeneous subpopulation of MA-104 [MA104] cell line. Archives of Virology 1993 133 3-4 477 483 2-s2.0-0027130980 (Pubitemid 2016462)
22. Gentleman R. C., Carey V. J., Bates D. M., Bolstad B., Dettling M., Dudoit S., Ellis B., Gautier L., Ge Y., Gentry J., Hornik K., Hothorn T., Huber W., Iacus S., Irizarry R., Leisch F., Li C., Maechler M., Rossini A. J., Sawitzki G., Smith C., Smyth G., Tierney L., Yang J. Y. H., Zhang J., Bioconductor: open software development for computational biology and bioinformatics. Genome Biology 2004 5 10, article R80 2-s2.0-28744458859
23. Irizarry R. A., Hobbs B., Collin F., Beazer-Barclay Y. D., Antonellis K. J., Scherf U., Speed T. P., Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003 4 2 249 264 2-s2.0-0142121516
24. Smyth G. K., Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 2004 3 1, article 3 2-s2.0-4544341015
25. Smyth G. K., Gentleman R., Carey V., Dudoit S., Irizarry R., Huber W., Limma: linear models for microarray data. Bioinformatics and Computational Biology Solutions Using R and Bioconductor 2005 New York, NY, USA Springer 397 420
26. Benjamini Y., Hochberg Y., Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society B 1995 57 289 300
27. Bhardwaj K., Guarino L., Kao C. C., The severe acute respiratory syndrome coronavirus Nsp15 protein is an endoribonuclease that prefers manganese as a cofactor. Journal of Virology 2004 78 22 12218 12224 2-s2.0-7644238616 10.1128/JVI.78.22.12218-12224.2004 (Pubitemid 39458741)
28. Gál P., Dobó J., Závodszky P., Sim R. B. M., Early complement proteases: C1r, C1s and MASPs. A structural insight into activation and functions. Molecular Immunology 2009 46 14 2745 2752 2-s2.0-68049129553 10.1016/j.molimm.2009.04.026
29. Sahu A., Lambris J. D., Structure and biology of complement protein C3, a connecting link between innate and acquired immunity. Immunological Reviews 2001 180 35 48 2-s2.0-0035006284 10.1034/j.1600-065X.2001.1800103.x (Pubitemid 32472850)
30. Jeffrey K. L., Camps M., Rommel C., Mackay C. R., Targeting dual-specificity phosphatases: manipulating MAP kinase signalling and immune responses. Nature Reviews Drug Discovery 2007 6 5 391 403 2-s2.0-34248210189 10.1038/nrd2289 (Pubitemid 46705202)
31. Caunt C. J., Rivers C. A., Conway-Campbell B. L., Norman M. R., McArdle C. A., Epidermal growth factor receptor and protein kinase C signaling to ERK2: spatiotemporal regulation of ERK2 by dual specificity phosphatases. The Journal of Biological Chemistry 2008 283 10 6241 6252 2-s2.0-44349122182 10.1074/jbc.M706624200
32. Silvers A. L., Bachelor M. A., Bowden G. T., The role of JNK and p38 MAPK activities in UVA-induced signaling pathways leading to AP-1 activation and c-Fos expression. Neoplasia 2003 5 4 319 329 2-s2.0-0041854253 (Pubitemid 37048609)
33. Shuai K., Liu B., Regulation of gene-activation pathways by pias proteins in the immune system. Nature Reviews Immunology 2005 5 8 593 605 2-s2.0-23444461182 10.1038/nri1667 (Pubitemid 41113191)
34. Wilkinson K. A., Henley J. M., Mechanisms, regulation and consequences of protein SUMOylation. Biochemical Journal 2010 428 2 133 145 2-s2.0-77952566949 10.1042/BJ20100158
35. Lim D., Jocelyn K. M., Yip G. W., Bay B. H., Silencing the Metallothionein-2A gene inhibits cell cycle progression from G1- to S-phase involving ATM and cdc25A signaling in breast cancer cells. Cancer Letters 2009 276 1 109 117 2-s2.0-60549107294 10.1016/j.canlet.2008.10.038
36. Liu P., Barkley L. R., Day T., Bi X., Slater D. M., Alexandrow M. G., Nasheuer H., Vaziri C., The Chk1-mediated S-phase checkpoint targets initiation factor Cdc45 via a Cdc25A/Cdk2-independent mechanism. The Journal of Biological Chemistry 2006 281 41 30631 30644 2-s2.0-33750053273 10.1074/jbc.M602982200 (Pubitemid 44582091)
37. Moss A. J., Sharma S., Brindle N. P. J., Rational design and protein engineering of growth factors for regenerative medicine and tissue engineering. Biochemical Society Transactions 2009 37 4 717 721 2-s2.0-70349308148 10.1042/BST0370717
38. Labib K., Kearsey S. E., Diffley J. F. X., MCM2-7 proteins are essential components of prereplicative complexes that accumulate cooperatively in the nucleus during G1-phase and are required to establish, but not maintain, the S-phase checkpoint. Molecular Biology of the Cell 2001 12 11 3658 3667 2-s2.0-0035201229 (Pubitemid 33108494)
39. Takahashi T. S., Wigley D. B., Walter J. C., Pumps, paradoxes and ploughshares: mechanism of the MCM2-7 DNA helicase. Trends in Biochemical Sciences 2005 30 8 437 444 2-s2.0-22744445013 10.1016/j.tibs.2005.06.007 (Pubitemid 41033239)
40. Lee Y. J., Lee C., Stress-activated protein kinases are involved in porcine reproductive and respiratory syndrome virus infection and modulate virus-induced cytokine production. Virology 2012 427 2 80 89 2-s2.0-84858753164 10.1016/j.virol.2012.02.017
41. Bhardwaj K., Liu P., Leibowitz J. L., Kao C. C., The coronavirus endoribonuclease nsp15 interacts with retinoblastoma tumor suppressor protein. Journal of Virology 2012 86 8 4294 4304 10.1128/JVI.07012-11
42. Friedrich T. D., Bedner E., Darzynkiewicz Z., Lehman J. M., Distinct patterns of MCM protein binding in nuclei of S phase and rereplicating SV40-infected monkey kidney cells. Cytometry A 2005 68 1 10 18 2-s2.0-27644448547 10.1002/cyto.a.20185 (Pubitemid 41572057)
43. Nash K., Chen W., Muzyczka N., Complete in vitro reconstitution of adeno-associated virus DNA replication requires the minichromosome maintenance complex proteins. Journal of Virology 2008 82 3 1458 1464 2-s2.0-38349096769 10.1128/JVI.01968-07
44. Stedman W., Deng Z., Lu F., Lieberman P. M., ORC, MCM, and histone hyperacetylation at the Kaposi's sarcoma-associated herpesvirus latent replication origin. Journal of Virology 2004 78 22 12566 12575 2-s2.0-7644241815 10.1128/JVI.78.22.12566-12575.2004 (Pubitemid 39458775)
45. Kawaguchi A., Nagata K., De novo replication of the influenza virus RNA genome is regulated by DNA replicative helicase, MCM. EMBO Journal 2007 26 21 4566 4575 2-s2.0-35648936553 10.1038/sj.emboj.7601881 (Pubitemid 350036637)
46. Yoo D., Wootton S. K., Li G., Song C., Rowland R. R., Colocalization and interaction of the porcine arterivirus nucleocapsid protein with the small nucleolar RNA-associated protein fibrillarin. Journal of Virology 2003 77 22 12173 12183 2-s2.0-0242363238 10.1128/JVI.77.22.12173-12183.2003 (Pubitemid 37339870)
47. Song C., Lu R., Bienzle D., Liu H. C., Yoo D., Interaction of the porcine reproductive and respiratory syndrome virus nucleocapsid protein with the inhibitor of MyoD family-a domain-containing protein. Biological Chemistry 2009 390 3 215 223 2-s2.0-62249223573 10.1515/BC.2009.028
48. Young T. M., Wang Q., Pe'ery T., Mathews M. B., The human I-mfa domain-containing protein, HIC, interacts with cyclin T1 and modulates P-TEFb-dependent transcription. Molecular and Cellular Biology 2003 23 18 6373 6384 2-s2.0-0042692788 10.1128/MCB.23.18.6373-6384.2003 (Pubitemid 37075751)
49. Sun Y., Chen N., Yoo D., Inhibition of type I IFN by nsp11 of PRRSV. Proceedings of the 30th Annual Meeting July 2011 Twin City, Minn, USA American Society of Virology