The sex-linked region in Populus tremuloides Turesson 141 corresponds to a pericentromeric region of about two million base pairs on P. trichocarpa chromosome 19

Plant Biology

Volumn 16, Issue 2, 2014, Pages 411-418

  Kersten, B ^a   Pakull, B ^a   Groppe, K ^a   Lueneburg, J ^a   Fladung, M ^a  

^a Federal Research Centre for Forestry and Forest Products   (Germany)

Author keywords

Aspen; Gender; Genetic map; Populus; Sex

Indexed keywords

CHROMOSOME; DECIDUOUS TREE; DIOECY; FLOWER; GENOME; RECOMBINATION; SEX DETERMINATION;

POPULUS; POPULUS TREMULOIDES; POPULUS TRICHOCARPA;

PLANT DNA; TRANSCRIPTION FACTOR;

ARTICLE; BASE PAIRING; CENTROMERE; CHROMOSOME MAP; FLOWER; GENDER; GENE MAPPING; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GROWTH, DEVELOPMENT AND AGING; PHYSIOLOGY; PLANT CHROMOSOME; PLANT GENE; PLANT GENOME; POPULUS; REPRODUCTION; SEX; SPECIES DIFFERENCE;

ASPEN; GENDER; GENETIC MAP; POPULUS; SEX;

BASE PAIRING; CENTROMERE; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; DNA, PLANT; FLOWERS; GENES, PLANT; GENETIC LINKAGE; GENETIC MARKERS; GENOME, PLANT; POPULUS; REPRODUCTION; SPECIES SPECIFICITY; TRANSCRIPTION FACTORS;

EID: 84897661563     PISSN: 14358603     EISSN: 14388677     Source Type: Journal    
DOI: 10.1111/plb.12048     Document Type: Article

References (49)

1. Boes T.K., Strauss S.H. (1994) Floral phenology and morphology of black cottonwood, Populus trichocarpa (Salicaceae). American Journal of Botany, 81, 562-567.
2. Brunner A.M. (2010) Reproductive development and sex determination. In: Jansson S., Bhalerao R.P., Groover A.T. (Eds), Genetics and genomics of Populus. Springer Science and Business Media, Heidelberg, Germany, pp 155-170.
3. Camacho C., Coulouris G., Avagyan V., Ma N., Papadopoulos J., Bealer K., Madden T.L. (2009) BLAST+: architecture and applications. BMC Bioinformatics, 10, 421.
4. Cervera M.T., Storme V., Ivens B., Gusmao J., Liu B.H., Hostyn V., Van Slycken J., Van Montagu M., Boerjan W. (2001) Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics, 158, 787-809.
5. Charlesworth D. (2002) Plant sex determination and sex chromosomes. Heredity, 88, 94-101.
6. Chen F., Tholl D., Bohlmann J., Pichersky E. (2011) The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom. The Plant Journal, 66, 212-229.
7. Choo K.H.A. (1998) Why is the centromere so cold? Genome Research, 8, 81-82.
8. Conesa A., Gotz S., Garcia-Gomez J.M., Terol J., Talon M., Robles M. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics, 21, 3674-3676.
9. Diggle P.K., Di Stilio V.S., Gschwend A.R., Golenberg E.M., Moore R.C., Russell J.R., Sinclair J.P. (2011) Multiple developmental processes underlie sex differentiation in angiosperms. Trends in Genetics, 27, 368-376.
10. Dumolin S., Demesure B., Petit R.J. (1995) Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method. Theoretical and Applied Genetics, 91, 1253-1256.
11. Eckenwalder J.E. (1996) Systematics and evolution of Populus. In: Stettler R.F., Bradshaw H.D., Heilman P.E., Hinckley T.M. (Eds), Biology of Populus and its implications for management and conservation. NRC Research Press, National Research Council of Canada, Ottawa, ON, Canada, pp 7-32.
12. Ellegren H. (2011) Sex-chromosome evolution: recent progress and the influence of male and female heterogamety. Nature Reviews Genetics, 12, 157-166.
13. Fechter I., Hausmann L., Daum M., Sorensen T.R., Viehover P., Weisshaar B., Topfer R. (2012) Candidate genes within a 143 kb region of the flower sex locus in Vitis. Molecular Genetics and Genomics, 287, 247-259.
14. Fourquin C., Vinauger-Douard M., Fogliani B., Dumas C., Scutt C.P. (2005) Evidence that CRABS CLAW and TOUSLED have conserved their roles in carpel development since the ancestor of the extant angiosperms. Proceedings of the National Academy of Sciences USA, 102, 4649-4654.
15. Frewen B.E., Chen T.H., Howe G.T., Davis J., Rohde A., Boerjan W., Bradshaw H.D. Jr (2000) Quantitative trait loci and candidate gene mapping of bud set and bud flush in Populus. Genetics, 154, 837-845.
16. Gaudet M., Jorge V., Paolucci I., Beritognolo I., Scarascia Mugnozza G., Sabatti M. (2008) Genetic linkage maps of Populus nigra L. including AFLPs, SSRs, SNPs, and sex trait. Tree Genetics and Genomes, 4, 25-36.
17. Gollapudi R., Revanna K.V., Hemmerich C., Schaack S., Dong Q. (2008) BOV - a web-based BLAST output visualization tool. BMC Genomics, 9, 414.
18. Jamilena M., Mariotti B., Manzano S. (2008) Plant sex chromosomes: molecular structure and function. Cytogenetic and Genome Research, 120, 255-264.
19. Kersten B., Pakull B., Fladung M. (2012) Mapping of the sex trait and sequence analysis of two linked genomic regions in Populus tremuloides. ScienceMed, 3, 203-210.
20. Kosambi D.D. (1944) The estimation of map distances from recombination values. Annals of Human Genetics, 12, 172-175.
21. Kotake T., Takada S., Nakahigashi K., Ohto M., Goto K. (2003) Arabidopsis TERMINAL FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWERING LOCUS T to regulate flowering time and several floral homeotic genes. Plant and Cell Physiology, 44, 555-564.
22. Liu Z., Moore P.H., Ma H., Ackerman C.M., Ragiba M., Yu Q., Pearl H.M., Kim M.S., Charlton J.W., Stiles J.I., Zee F.T., Paterson A.H., Ming R. (2004) A primitive Y chromosome in papaya marks incipient sex chromosome evolution. Nature, 427, 348-352.
23. Ma J., Bennetzen J.L. (2006) Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice. Proceedings of the National Academy of Sciences USA, 103, 383-388.
24. Ming R., Bendahmane A., Renner S.S. (2011) Sex chromosomes in land plants. Annual Review of Plant Biology, 62, 485-514.
25. Pakull B., Groppe K., Meyer M., Markussen T., Fladung M. (2009) Genetic linkage mapping in aspen (Populus tremula L. and Populus tremuloides Michx.). Tree Genetics and Genomes, 5, 505-515.
26. Pakull B., Groppe K., Mecucci F., Gaudet M., Sabatti M., Fladung M. (2011) Genetic mapping of linkage group XIX and identification of sex-linked SSR markers in a Populus tremula x Populus tremuloides cross. Canadian Journal of Forest Research, 41, 245-253.
27. Paolucci I., Gaudet M., Jorge V., Beritognolo I., Terzoli S., Kuzminsky E., Muleo R., Scarascia Mugnozza G., Sabatti M. (2010) Genetic linkage maps of Populus alba L. and comparative mapping analysis of sex determination across Populus species. Tree Genetics and Genomes, 6, 863-875.
28. Penin A.A., Budaev R.A., Ezhova T.A. (2007) Interaction of the BRACTEA gene with the TERMINAL FLOWER1, LEAFY, and APETALA1 genes during inflorescence and flower development in Arabidopsis thaliana. Genetika, 43, 370-376.
29. Renner S.S., Ricklefs R.E. (1995) Dioecy and its correlates in the flowering plants. American Journal of Botany, 82, 596-606.
30. Roe J.L., Nemhauser J.L., Zambryski P.C. (1997) TOUSLED participates in apical tissue formation during gynoecium development in Arabidopsis. The Plant Cell, 9, 335-353.
31. Rottmann W.H., Meilan R., Sheppard L.A., Brunner A.M., Skinner J.S., Ma C., Cheng S., Jouanin L., Pilate G., Strauss S.H. (2000) Diverse effects of overexpression of LEAFY and PTLF, a poplar (Populus) homolog of LEAFY/FLORICAULA, in transgenic poplar and Arabidopsis. The Plant Journal, 22, 235-245.
32. Sather D.N., Jovanovic M., Golenberg E.M. (2010) Functional analysis of B and C class floral organ genes in spinach demonstrates their role in sexual dimorphism. BMC Plant Biology, 10, 46.
33. Semerikov V., Lagercrantz U., Tsarouhas V., Ronnberg-Wastljung A., Alstrom-Rapaport C., Lascoux M. (2003) Genetic mapping of sex-linked markers in Salix viminalis L. Heredity, 91, 293-299.
34. Slavov G.T., Zhelev P. (2010) Salient biological features, systematics, and genetic variation of Populus. In: Jansson S., Bhalerao R.P., Groover A.T. (Eds), Genetics and genomics of Populus. Springer Science and Business Media, Heidelberg, Germany, pp 15-38.
35. Stam P. (1993) Construction of integrated genetic-linkage maps by means of a new computer package - Joinmap. The Plant Journal, 3, 739-744.
36. Telgmann-Rauber A., Jamsari A., Kinney M.S., Pires J.C., Jung C. (2007) Genetic and physical maps around the sex-determining M-locus of the dioecious plant asparagus. Molecular Genetics and Genomics, 278, 221-234.
37. Tuskan G.A., DiFazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D. (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science, 313, 1596-1604.
38. Tuskan G.A., DiFazio S., Faivre-Rampant P., Gaudet M., Harfouche A., Jorge V., Labbé J.L., Ranjan P., Sabatti M., Slavov G., Street N., Tschaplinski T.J., Yin T. (2012) The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis. Tree Genetics and Genomes, 8, 559-571.
39. Usadel B., Poree F., Nagel A., Lohse M., Czedik-Eysenberg A., Stitt M. (2009) A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize. Plant, Cell & Environment, 32, 1211-1229.
40. VanBuijtenen J.P., Einspahr D.W. (1959) Note on the presence of sex chromosomes in Populus tremuloides. Botanical Gazette, 121, 60-61.
41. Wang Y.X., Sun X.Y., Tan B.Y., Zhang B., Xu L.A., Huang M.R., Wang M.X. (2010) A genetic linkage map of Populus adenopoda Maxim. x P. alba L. hybrid based on SSR and SRAP markers. Euphytica, 173, 193-205.
42. Wang Y.X., Zhang B., Sun X.Y., Tan B.Y., Xu L.A., Huang M.R., Wang M.X. (2011) Comparative genome mapping among Populus adenopoda, P. alba, P. deltoides, P. euramericana and P. trichocarpa. Genes and Genetic Systems, 86, 257-268.
43. Woolbright S.A., Difazio S.P., Yin T., Martinsen G.D., Zhang X., Allan G.J., Whitham T.G., Keim P. (2008) A dense linkage map of hybrid cottonwood (Populus fremontii x P. angustifolia) contributes to long-term ecological research and comparison mapping in a model forest tree. Heredity, 100, 59-70.
44. Wu J., Yamagata H., Hayashi-Tsugane M., Hijishita S., Fujisawa M., Shibata M., Ito Y., Nakamura M., Sakaguchi M., Yoshihara R., Kobayashi H., Ito K., Karasawa W., Yamamoto M., Saji S., Katagiri S., Kanamori H., Namiki N., Katayose Y., Matsumoto T., Sasaki T. (2004) Composition and structure of the centromeric region of rice chromosome 8. The Plant Cell, 16, 967-976.
45. Yin T.M., DiFazio S.P., Gunter L.E., Riemenschneider D., Tuskan G.A. (2004) Large-scale heterospecific segregation distortion in Populus revealed by a dense genetic map. Theoretical and Applied Genetics, 109, 451-463.
46. Yin T., Difazio S.P., Gunter L.E., Zhang X., Sewell M.M., Woolbright S.A., Allan G.J., Kelleher C.T., Douglas C.J., Wang M., Tuskan G.A. (2008) Genome structure and emerging evidence of an incipient sex chromosome in Populus. Genome Research, 18, 422-430.
47. Zhang W., Wang X., Yu Q., Ming R., Jiang J. (2008) DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya. Genome Research, 18, 1938-1943.
48. Zhang B., Tong C.F., Yin T.M., Zhang X.Y., Zhuge Q.Q., Huang M.R., Wang M.X., Wu R.L. (2009) Detection of quantitative trait loci influencing growth trajectories of adventitious roots in Populus using functional mapping. Tree Genetics and Genomes, 5, 539-552.
49. Zhang H.L., Harry D.E., Ma C., Yuceer C., Hsu C.Y., Vikram V., Shevchenko O., Etherington E., Strauss S.H. (2010) Precocious flowering in trees: the FLOWERING LOCUS T gene as a research and breeding tool in Populus. Journal of Experimental Botany, 61, 2549-2560.