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Volumn 164, Issue 3, 2014, Pages 1365-1377

Alterations in the transcriptome of soybean in response to enhanced somatic embryogenesis promoted by orthologs of AGAMOUS-Like15 and AGAMOUS-Like18

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; TRANSCRIPTOME; VEGETABLE PROTEIN;

EID: 84897611158     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.113.234062     Document Type: Article
Times cited : (42)

References (59)
  • 1
    • 34250181732 scopus 로고    scopus 로고
    • The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis
    • Adamczyk BJ, Lehti-Shiu MD, Fernandez DE (2007) The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis. Plant J 50: 1007-1019
    • (2007) Plant J , vol.50 , pp. 1007-1019
    • Adamczyk, B.J.1    Lehti-Shiu, M.D.2    Fernandez, D.E.3
  • 2
    • 33747884345 scopus 로고    scopus 로고
    • Gene Expression Omnibus: Microarray data storage, submission, retrieval, and analysis
    • Barrett T, Edgar R (2006) Gene Expression Omnibus: microarray data storage, submission, retrieval, and analysis. Methods Enzymol 411: 352-369
    • (2006) Methods Enzymol , vol.411 , pp. 352-369
    • Barrett, T.1    Edgar, R.2
  • 5
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743
    • (1998) Plant J , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 6
    • 0032033557 scopus 로고    scopus 로고
    • Abscisic acid, polyamines and phenolic acids in sessile oak somatic embryos in relation to their conversion potential
    • Cvikrova M, Mala J, Eder J, Hrubcova M, Vagner M (1998) Abscisic acid, polyamines and phenolic acids in sessile oak somatic embryos in relation to their conversion potential. Plant Physiol Biochem 36: 247-255
    • (1998) Plant Physiol Biochem , vol.36 , pp. 247-255
    • Cvikrova, M.1    Mala, J.2    Eder, J.3    Hrubcova, M.4    Vagner, M.5
  • 7
    • 0038814792 scopus 로고    scopus 로고
    • Effect of inhibition of biosynthesis of phenylpropanoids on sessile oak somatic embryogenesis
    • Cvikrova M, Mala J, Hrubcova M, Eder J, Zon J, Machackova I (2003) Effect of inhibition of biosynthesis of phenylpropanoids on sessile oak somatic embryogenesis. Plant Physiol Biochem 41: 251-259
    • (2003) Plant Physiol Biochem , vol.41 , pp. 251-259
    • Cvikrova, M.1    Mala, J.2    Hrubcova, M.3    Eder, J.4    Zon, J.5    McHackova, I.6
  • 9
    • 78650978418 scopus 로고    scopus 로고
    • Glutathione transferases
    • doi/10. 1199/tab. 0131
    • Dixon DP, Edwards R (2010) Glutathione transferases. The Arabidopsis Book 8: e0131, doi/10. 1199/tab. 0131
    • (2010) The Arabidopsis Book , vol.8
    • Dixon, D.P.1    Edwards, R.2
  • 10
    • 77954299992 scopus 로고    scopus 로고
    • AgriGO: A GO analysis toolkit for the agricultural community
    • Du Z, Zhou X, Ling Y, Zhang ZH, Su Z (2010) agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 38: W64-W70
    • (2010) Nucleic Acids Res , vol.38
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.H.4    Su, Z.5
  • 12
    • 4544314621 scopus 로고    scopus 로고
    • The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid
    • Gazzarrini S, Tsuchiya Y, Lumba S, Okamoto M, McCourt P (2004) The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid. Dev Cell 7: 373-385
    • (2004) Dev Cell , vol.7 , pp. 373-385
    • Gazzarrini, S.1    Tsuchiya, Y.2    Lumba, S.3    Okamoto, M.4    McCourt, P.5
  • 13
    • 67849116896 scopus 로고    scopus 로고
    • PathExpress update: The enzyme neighbourhood method of associating gene-expression data with metabolic pathways
    • Goffard N, Frickey T, Weiller G (2009) PathExpress update: the enzyme neighbourhood method of associating gene-expression data with metabolic pathways. Nucleic Acids Res 37: W335-W339
    • (2009) Nucleic Acids Res , vol.37
    • Goffard, N.1    Frickey, T.2    Weiller, G.3
  • 14
    • 34547572234 scopus 로고    scopus 로고
    • PathExpress: A web-based tool to identify relevant pathways in gene expression data
    • Goffard N, Weiller G (2007) PathExpress: a web-based tool to identify relevant pathways in gene expression data. Nucleic Acids Res 35: W176-W181
    • (2007) Nucleic Acids Res , vol.35
    • Goffard, N.1    Weiller, G.2
  • 15
    • 0142214657 scopus 로고    scopus 로고
    • Expression and maintenance of embryogenic potential is enhanced through constitutive expression of AGAMOUS-Like 15
    • Harding EW, Tang W, Nichols KW, Fernandez DE, Perry SE (2003) Expression and maintenance of embryogenic potential is enhanced through constitutive expression of AGAMOUS-Like 15. Plant Physiol 133: 653-663
    • (2003) Plant Physiol , vol.133 , pp. 653-663
    • Harding, E.W.1    Tang, W.2    Nichols, K.W.3    Fernandez, D.E.4    Perry, S.E.5
  • 16
    • 0029347051 scopus 로고
    • AGL15, a MADS domain protein expressed in developing embryos
    • Heck GR, Perry SE, Nichols KW, Fernandez DE (1995) AGL15, a MADS domain protein expressed in developing embryos. Plant Cell 7: 1271-1282
    • (1995) Plant Cell , vol.7 , pp. 1271-1282
    • Heck, G.R.1    Perry, S.E.2    Nichols, K.W.3    Fernandez, D.E.4
  • 17
    • 37249087892 scopus 로고    scopus 로고
    • A transcriptional repression motif in the MADS factor AGL15 is involved in recruitment of histone deacetylase complex components
    • Hill K, Wang H, Perry SE (2008) A transcriptional repression motif in the MADS factor AGL15 is involved in recruitment of histone deacetylase complex components. Plant J 53: 172-185
    • (2008) Plant J , vol.53 , pp. 172-185
    • Hill, K.1    Wang, H.2    Perry, S.E.3
  • 18
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 19
    • 0035983768 scopus 로고    scopus 로고
    • Establishment of a reproducible tissue culture system for the induction of Arabidopsis somatic embryos
    • Ikeda-Iwai M, Satoh S, Kamada H (2002) Establishment of a reproducible tissue culture system for the induction of Arabidopsis somatic embryos. J Exp Bot 53: 1575-1580
    • (2002) J Exp Bot , vol.53 , pp. 1575-1580
    • Ikeda-Iwai, M.1    Satoh, S.2    Kamada, H.3
  • 20
    • 57849098867 scopus 로고    scopus 로고
    • Genome-wide transcriptional analysis of super-embryogenic Medicago truncatula explant cultures
    • Imin N, Goffard N, Nizamidin M, Rolfe BG (2008) Genome-wide transcriptional analysis of super-embryogenic Medicago truncatula explant cultures. BMC Plant Biol 8: 110
    • (2008) BMC Plant Biol , vol.8 , pp. 110
    • Imin, N.1    Goffard, N.2    Nizamidin, M.3    Rolfe, B.G.4
  • 21
  • 22
    • 70350223642 scopus 로고    scopus 로고
    • Molecular aspects of somatic-to-embryogenic transition in plants
    • Karami O, Aghavaisi B, Mahmoudi Pour A (2009) Molecular aspects of somatic-to-embryogenic transition in plants. J Chem Biol 2: 177-190
    • (2009) J Chem Biol , vol.2 , pp. 177-190
    • Karami, O.1    Aghavaisi, B.2    Mahmoudi Pour, A.3
  • 23
    • 77955658190 scopus 로고    scopus 로고
    • The molecular basis for stress-induced acquisition of somatic embryogenesis
    • Karami O, Saidi A (2010) The molecular basis for stress-induced acquisition of somatic embryogenesis. Mol Biol Rep 37: 2493-2507
    • (2010) Mol Biol Rep , vol.37 , pp. 2493-2507
    • Karami, O.1    Saidi, A.2
  • 24
    • 33947498951 scopus 로고    scopus 로고
    • Genetic improvement of the somatic embryogenesis and regeneration in soybean and transformation of the improved breeding lines
    • Kita Y, Nishizawa K, Takahashi M, Kitayama M, Ishimoto M (2007) Genetic improvement of the somatic embryogenesis and regeneration in soybean and transformation of the improved breeding lines. Plant Cell Rep 26: 439-447
    • (2007) Plant Cell Rep , vol.26 , pp. 439-447
    • Kita, Y.1    Nishizawa, K.2    Takahashi, M.3    Kitayama, M.4    Ishimoto, M.5
  • 26
    • 4444260482 scopus 로고    scopus 로고
    • Screening multiple soybean cultivars (MG 00 to MG VIII) for somatic embryogenesis following Agrobacteriummediated transformation of immature cotyledons
    • Ko TS, Nelson RL, Korban SS (2004) Screening multiple soybean cultivars (MG 00 to MG VIII) for somatic embryogenesis following Agrobacteriummediated transformation of immature cotyledons. Crop Sci 44: 1825-1831
    • (2004) Crop Sci , vol.44 , pp. 1825-1831
    • Ko, T.S.1    Nelson, R.L.2    Korban, S.S.3
  • 29
  • 31
    • 0031777941 scopus 로고    scopus 로고
    • Somatic embryogenesis in Arabidopsis thaliana is facilitated by mutations in genes repressing meristematic cell divisions
    • Mordhorst AP, Voerman KJ, Hartog MV, Meijer EA, van Went J, Koornneef M, de Vries SC (1998) Somatic embryogenesis in Arabidopsis thaliana is facilitated by mutations in genes repressing meristematic cell divisions. Genetics 149: 549-563
    • (1998) Genetics , vol.149 , pp. 549-563
    • Mordhorst, A.P.1    Voerman, K.J.2    Hartog, M.V.3    Meijer, E.A.4    van Went, J.5    Koornneef, M.6    de Vries, S.C.7
  • 32
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bioassays with tobacco tissue cultures
    • Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15: 473-497
    • (1962) Physiol Plant , vol.15 , pp. 473-497
    • Murashige, T.1    Skoog, F.2
  • 34
    • 0024206625 scopus 로고
    • Isolation and properties of cDNA clones encoding SRF, a transcription factor that binds to the c-fos serum response element
    • Norman C, Runswick M, Pollock R, Treisman R (1988) Isolation and properties of cDNA clones encoding SRF, a transcription factor that binds to the c-fos serum response element. Cell 55: 989-1003
    • (1988) Cell , vol.55 , pp. 989-1003
    • Norman, C.1    Runswick, M.2    Pollock, R.3    Treisman, R.4
  • 35
    • 51349158234 scopus 로고    scopus 로고
    • A tale of plant glutathione S-transferases: Since 1970
    • Oztetik E (2008) A tale of plant glutathione S-transferases: since 1970. Bot Rev 74: 419-437
    • (2008) Bot Rev , vol.74 , pp. 419-437
    • Oztetik, E.1
  • 38
    • 0035081501 scopus 로고    scopus 로고
    • Expression pattern of the Arabidopsis thaliana AtEP3/AtchitIV endochitinase gene
    • Passarinho PA, Van Hengel AJ, Fransz PF, de Vries SC (2001) Expression pattern of the Arabidopsis thaliana AtEP3/AtchitIV endochitinase gene. Planta 212: 556-567
    • (2001) Planta , vol.212 , pp. 556-567
    • Passarinho, P.A.1    Van Hengel, A.J.2    Fransz, P.F.3    de Vries, S.C.4
  • 39
    • 0033134128 scopus 로고    scopus 로고
    • The MADS-domain protein AGAMOUS-Like 15 accumulates in embryonic tissues with diverse origins
    • Perry SE, Lehti MD, Fernandez DE (1999) The MADS-domain protein AGAMOUS-Like 15 accumulates in embryonic tissues with diverse origins. Plant Physiol 120: 121-130
    • (1999) Plant Physiol , vol.120 , pp. 121-130
    • Perry, S.E.1    Lehti, M.D.2    Fernandez, D.E.3
  • 40
    • 0030292876 scopus 로고    scopus 로고
    • The MADS domain protein AGL15 localizes to the nucleus during early stages of seed development
    • Perry SE, Nichols KW, Fernandez DE (1996) The MADS domain protein AGL15 localizes to the nucleus during early stages of seed development. Plant Cell 8: 1977-1989
    • (1996) Plant Cell , vol.8 , pp. 1977-1989
    • Perry, S.E.1    Nichols, K.W.2    Fernandez, D.E.3
  • 41
    • 0036581160 scopus 로고    scopus 로고
    • Relative Expression Software Tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
    • Pfaffl MW, Horgan GW, Dempfle L (2002) Relative Expression Software Tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res 30: e36
    • (2002) Nucleic Acids Res , vol.30
    • Pfaffl, M.W.1    Horgan, G.W.2    Dempfle, L.3
  • 42
    • 0029346927 scopus 로고
    • Diverse roles for MADS box genes in Arabidopsis development
    • Rounsley SD, Ditta GS, Yanofsky MF (1995) Diverse roles for MADS box genes in Arabidopsis development. Plant Cell 7: 1259-1269
    • (1995) Plant Cell , vol.7 , pp. 1259-1269
    • Rounsley, S.D.1    Ditta, G.S.2    Yanofsky, M.F.3
  • 43
    • 0031420770 scopus 로고    scopus 로고
    • Effect of explant orientation, p H, solidifying agent and wounding on initiation of soybean somatic embryos
    • Santarem ER, Pelissier B, Finer JJ (1997) Effect of explant orientation, p H, solidifying agent and wounding on initiation of soybean somatic embryos. In Vitro Cell Dev Biol Plant 33: 13-19
    • (1997) In Vitro Cell Dev Biol Plant , vol.33 , pp. 13-19
    • Santarem, E.R.1    Pelissier, B.2    Finer, J.J.3
  • 45
    • 0025091858 scopus 로고
    • Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: The protein shows homology to transcription factors
    • Sommer H, Beltrán JP, Huijser P, Pape H, Lönnig WE, Saedler H, Schwarz-Sommer Z (1990) Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. EMBO J 9: 605-613
    • (1990) EMBO J , vol.9 , pp. 605-613
    • Sommer, H.1    Beltrán, J.P.2    Huijser, P.3    Pape, H.4    Lönnig, W.E.5    Saedler, H.6    Schwarz-Sommer, Z.7
  • 47
    • 0035125120 scopus 로고    scopus 로고
    • Ectopic expression of ABI3 gene enhances freezing tolerance in response to abscisic acid and low temperature in Arabidopsis thaliana
    • Tamminen I, Mäkelä P, Heino P, Palva ET (2001) Ectopic expression of ABI3 gene enhances freezing tolerance in response to abscisic acid and low temperature in Arabidopsis thaliana. Plant J 25: 1-8
    • (2001) Plant J , vol.25 , pp. 1-8
    • Tamminen, I.1    Mäkelä, P.2    Heino, P.3    Palva, E.T.4
  • 48
    • 28444496724 scopus 로고    scopus 로고
    • Secretion of a chitinase-like protein in embryogenic suspension cultures of Dactylis glomerata L
    • Tchorbadjieva MI, Pantchev IY (2006) Secretion of a chitinase-like protein in embryogenic suspension cultures of Dactylis glomerata L. Biol Plant 50: 142-145
    • (2006) Biol Plant , vol.50 , pp. 142-145
    • Tchorbadjieva, M.I.1    Pantchev, I.Y.2
  • 49
    • 48549107892 scopus 로고    scopus 로고
    • The MADS-domain transcriptional regulator AGAMOUS-LIKE15 promotes somatic embryo development in Arabidopsis and soybean
    • Thakare D, Tang W, Hill K, Perry SE (2008) The MADS-domain transcriptional regulator AGAMOUS-LIKE15 promotes somatic embryo development in Arabidopsis and soybean. Plant Physiol 146: 1663-1672
    • (2008) Plant Physiol , vol.146 , pp. 1663-1672
    • Thakare, D.1    Tang, W.2    Hill, K.3    Perry, S.E.4
  • 50
    • 0037507700 scopus 로고    scopus 로고
    • Clustering of microarray data reveals transcript patterns associated with somatic embryogenesis in soybean
    • Thibaud-Nissen FO, Shealy RT, Khanna A, Vodkin LO (2003) Clustering of microarray data reveals transcript patterns associated with somatic embryogenesis in soybean. Plant Physiol 132: 118-136
    • (2003) Plant Physiol , vol.132 , pp. 118-136
    • Thibaud-Nissen, F.O.1    Shealy, R.T.2    Khanna, A.3    Vodkin, L.O.4
  • 51
    • 33745768586 scopus 로고    scopus 로고
    • A network of local and redundant gene regulation governs Arabidopsis seed maturation
    • To A, Valon C, Savino G, Guilleminot J, Devic M, Giraudat J, Parcy F (2006) A network of local and redundant gene regulation governs Arabidopsis seed maturation. Plant Cell 18: 1642-1651
    • (2006) Plant Cell , vol.18 , pp. 1642-1651
    • To, A.1    Valon, C.2    Savino, G.3    Guilleminot, J.4    Devic, M.5    Giraudat, J.6    Parcy, F.7
  • 52
    • 0030694774 scopus 로고    scopus 로고
    • Promotive and inhibitory effects of diverse arabinogalactan proteins on Daucus carota L. somatic embryogenesis
    • Toonen MAJ, Schmidt EDL, van Kammen A, de Vries SC (1997) Promotive and inhibitory effects of diverse arabinogalactan proteins on Daucus carota L. somatic embryogenesis. Planta 203: 188-195
    • (1997) Planta , vol.203 , pp. 188-195
    • Toonen, M.A.J.1    Schmidt, E.D.L.2    van Kammen, A.3    de Vries, S.C.4
  • 53
    • 2242440177 scopus 로고    scopus 로고
    • Expression pattern of the carrot EP3 endochitinase genes in suspension cultures and in developing seeds
    • van Hengel AJ, Guzzo F, van Kammen A, de Vries SC (1998) Expression pattern of the carrot EP3 endochitinase genes in suspension cultures and in developing seeds. Plant Physiol 117: 43-53
    • (1998) Plant Physiol , vol.117 , pp. 43-53
    • van Hengel, A.J.1    Guzzo, F.2    van Kammen, A.3    de Vries, S.C.4
  • 54
    • 0035028330 scopus 로고    scopus 로고
    • N-Acetylglucosamine and glucosamine-containing arabinogalactan proteins control somatic embryogenesis
    • van Hengel AJ, Tadesse Z, Immerzeel P, Schols H, van Kammen A, de Vries SC (2001) N-Acetylglucosamine and glucosamine-containing arabinogalactan proteins control somatic embryogenesis. Plant Physiol 125: 1880-1890
    • (2001) Plant Physiol , vol.125 , pp. 1880-1890
    • van Hengel, A.J.1    Tadesse, Z.2    Immerzeel, P.3    Schols, H.4    van Kammen, A.5    de Vries, S.C.6
  • 55
    • 77449094384 scopus 로고    scopus 로고
    • Regulation of somatic embryogenesis in higher plants
    • Yang XY, Zhang XL (2010) Regulation of somatic embryogenesis in higher plants. Crit Rev Plant Sci 29: 36-57
    • (2010) Crit Rev Plant Sci , vol.29 , pp. 36-57
    • Yang, X.Y.1    Zhang, X.L.2
  • 56
    • 84875751832 scopus 로고    scopus 로고
    • AGAMOUS-Like15 promotes somatic embryogenesis in Arabidopsis and soybean in part by the control of ethylene biosynthesis and response
    • Zheng Q, Zheng Y, Perry SE (2013) AGAMOUS-Like15 promotes somatic embryogenesis in Arabidopsis and soybean in part by the control of ethylene biosynthesis and response. Plant Physiol 161: 2113-2127
    • (2013) Plant Physiol , vol.161 , pp. 2113-2127
    • Zheng, Q.1    Zheng, Y.2    Perry, S.E.3
  • 57
    • 79960719180 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation to verify or to identify in vivo protein-DNA interactions
    • Zheng Y, Perry SE (2011) Chromatin immunoprecipitation to verify or to identify in vivo protein-DNA interactions. Methods Mol Biol 754: 277-291
    • (2011) Methods Mol Biol , vol.754 , pp. 277-291
    • Zheng, Y.1    Perry, S.E.2
  • 58
    • 70849092086 scopus 로고    scopus 로고
    • Global identification of targets of the Arabidopsis MADS domain protein AGAMOUSLike15
    • Zheng Y, Ren N, Wang H, Stromberg AJ, Perry SE (2009) Global identification of targets of the Arabidopsis MADS domain protein AGAMOUSLike15. Plant Cell 21: 2563-2577
    • (2009) Plant Cell , vol.21 , pp. 2563-2577
    • Zheng, Y.1    Ren, N.2    Wang, H.3    Stromberg, A.J.4    Perry, S.E.5
  • 59
    • 14644424683 scopus 로고    scopus 로고
    • Control of expression and autoregulation of AGL15, a member of the MADS-box family
    • Zhu C, Perry SE (2005) Control of expression and autoregulation of AGL15, a member of the MADS-box family. Plant J 41: 583-594
    • (2005) Plant J , vol.41 , pp. 583-594
    • Zhu, C.1    Perry, S.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.