Diversity and dynamics of microbial communities at each step of treatment plant for potable water generation

Water Research

Volumn 52, Issue , 2014, Pages 218-230

  Lin, Wenfang ^a   Yu, Zhisheng ^a,b   Zhang, Hongxun ^a   Thompson, Ian P ^b  

^a UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^b UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

454 pyrosequencing; Biofilm; Drinking water treatment process; Microbial diversity; QPCR

Indexed keywords

MICROORGANISMS; POLYMERASE CHAIN REACTION; POTABLE WATER; WATER FILTRATION; WATER TREATMENT; WATER TREATMENT PLANTS;

454-PYROSEQUENCING; COMMUNITY IS; DRINKING WATER TREATMENT PROCESS; EUKARYOTICS; MICROBIAL COMMUNITIES; MICROBIAL DIVERSITY; QPCR; SAND-FILTRATION; WATER SAMPLES; WATER TREATMENT PROCESS;

BIOFILMS;

DRINKING WATER; RNA 16S; RNA 18S;

BACTERIUM; BIOFILM; CHLORINATION; FILTRATION; MICROBIAL COMMUNITY; POLYMERASE CHAIN REACTION; PURIFICATION; SPECIES DIVERSITY; WATER TREATMENT;

ACINETOBACTER; ARTICLE; ASPERGILLUS; BIOFILM; CHLORINATION; CLOSTRIDIUM; FUNGUS; LEGIONELLA; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MYCOBACTERIUM; NAEGLERIA; NONHUMAN; PATHOGENESIS; PENICILLIUM; PRIORITY JOURNAL; PROTOZOON; PYROSEQUENCING; WATER ANALYSIS; WATER TREATMENT; BACTERIUM; BIODIVERSITY; CHINA; DNA SEQUENCE; EUKARYOTIC CELL; FILTRATION; GENETICS; ISOLATION AND PURIFICATION; MICROBIAL CONSORTIUM; MICROBIOLOGY; PATHOGENICITY; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; WATER MANAGEMENT;

CHINA;

ACINETOBACTER; ASPERGILLUS; BACTERIA (MICROORGANISMS); CLOSTRIDIUM; EUKARYOTA; FUNGI; HARTMANNELLIDAE; LEGIONELLA; MYCOBACTERIUM; NAEGLERIA; PENICILLIUM; PROTOZOA; RHIZOPODA;

BACTERIA; BIODIVERSITY; CHINA; DRINKING WATER; EUKARYOTIC CELLS; FILTRATION; LEGIONELLA; MICROBIAL CONSORTIA; MYCOBACTERIUM; REAL-TIME POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 18S; SEQUENCE ANALYSIS, DNA; WATER MICROBIOLOGY; WATER PURIFICATION;

EID: 84897602103     PISSN: 00431354     EISSN: 18792448     Source Type: Journal    
DOI: 10.1016/j.watres.2013.10.071     Document Type: Article

References (60)

1. Abbaszadegan M., Hasan M.N., Gerba C.P., Roessler P.F., Wilson B.R., Kuennen R., Van Dellen E. The disinfection efficacy of a point-of-use water treatment system against bacterial, viral and protozoan waterborne pathogens. Water Res. 1997, 31(3):574-582.
2. Aizenberg-Gershtein Y., Vaizel-Ohayon D., Halpern M. Structure of bacterial communities in diverse freshwater habitats. Canad. J. Microbiol. 2012, 58(3):326-335.
3. Andersson A.F., Riemann L., Bertilsson S. Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities. Isme Journal 2010, 4(2):171-181.
4. Aw T.G., Rose J.B. Detection of pathogens in water: from phylochips to qPCR to pyrosequencing. Curr. Opin. Biotechnol. 2012, 23(3):422-430.
5. Berry D., Xi C., Raskin L. Microbial ecology of drinking water distribution systems. Current Opinion in Biotechnology 2006, 17(3):297-302.
6. Besemer K., Peter H., Logue J.B., Langenheder S., Lindstrom E.S., Tranvik L.J., Battin T.J. Unraveling assembly of stream biofilm communities. Isme Journal 2012, 6(8):1459-1468.
7. Bonadonna L., Briancesco R., Libera S.D., Lacchetti I., Paradiso R., Semproni M. Microbial characterization of water and biofilms in drinking water distribution systems at sport facilities. Central Eur. J. Public Health 2009, 17(2):99-102.
8. Brinkman N.E., Haugland R.A., Wymer L.J., Byappanahalli M., Whitman R.L., Vesper S.J. Evaluation of a rapid, quantitative real-time PCR method for enumeration of pathogenic Candida cells in water. Appl. Environ. Microbiol. 2003, 69(3):1775-1782.
9. Buesing N., Filippini M., Burgmann H., Gessner M.O. Microbial communities in contrasting freshwater marsh microhabitats. FEMS Microbiol. Ecol. 2009, 69(1):84-97.
10. Declerck P., Behets J., van Hoef V., Ollevier F. Detection of Legionella spp. and some of their amoeba hosts in floating biofilms from anthropogenic and natural aquatic environments. Water Res. 2007, 41(14):3159-3167.
11. Douterelo I., Sharpe R.L., Boxall J.B. Influence of hydraulic regimes on bacterial community structure and composition in an experimental drinking water distribution system. Water Research 2013, 47(2):503-516.
12. Eichler S., Christen R., Holtje C., Westphal P., Botel J., Brettar I., Mehling A., Hofle M.G. Composition and dynamics of bacterial communities of a drinking water supply system as assessed by RNA- and DNA-based 16S rRNA gene fingerprinting. Appl. Environ. Microbiol. 2006, 72(3):1858-1872.
13. Elhariry H., Gherbawy Y., El-Deeb B., Altalhi A. Molecular Identification and Biofilm-Forming Ability of Culturable Aquatic Bacteria In Microbial Biofilms Formed in Drinking Water Distribution Networks. Geomicrobiology Journal 2012, 29(6):561-569.
14. Feazel L.M., Baumgartner L.K., Peterson K.L., Frank D.N., Harris J.K., Pace N.R. Opportunistic pathogens enriched in showerhead biofilms. Proceedings of the National Academy of Sciences of the United States of America 2009, 106(38):16393-16398.
15. Felföldi T., Heger Z., Vargha M., Mcrialigeti K. Detection of potentially pathogenic bacteria in the drinking water distribution system of a hospital in Hungary. Clinical Microbiology and Infection 2010, 16(1):89-92.
16. Flemming H.C., Ridgway H. Biofilm control: conventional and alternative approaches. Mar. Ind. Biofoul. 2009, 4(1):103-117.
17. Garcia P.R., Nandini S., Sarma S., Valderrama E.R., Cuesta I., Hurtado M.D. Seasonal variations of zooplankton abundance in the freshwater reservoir Valle de Bravo (Mexico). Hydrobiologia 2002, 467(1):99-108.
18. Gobet A., Boer S.I., Huse S.M., Van Beusekom J.E.E., Quince C., Sogin M.L., Boetius A., Ramette A. Diversity and dynamics of rare and of resident bacterial populations in coastal sands. Isme Journal 2012, 6(3):542-553.
19. Hageskal G., Lima N., Skaar I. The study of fungi in drinking water. Mycol. Res. 2009, 113(2):165-172.
20. Hammes F., Berney M., Wang Y., Vital M., Koster O., Egli T. Flow-cytometric total bacterial cell counts as a descriptive microbiological parameter for drinking water treatment processes. Water Res. 2008, 42(1-2):269-277.
21. Henne K., Kahlisch L., Brettar I., Hofle M.G. Comparison of structure and composition of bacterial core communities in mature drinking water biofilms and bulk water of a local network. Applied and Environmental Microbiology 2012, 78(10):3530-3538.
22. Hsu B.M., Lin C.L., Shih F.C. Survey of pathogenic free-living amoebae and Legionella spp. in mud spring recreation area. Water Res. 2009, 43(11):2817-2828.
23. ® of Systematic Bacteriology 2005, 119-132. Springer.
24. Joh G., Lee J. Cyanobacterial biofilms on sedimentation basins in a water treatment plant in South Korea. J. Appl. Phycol. 2011, 24(2):285-293.
25. Kasuga I., Shimazaki D., Kunikane S. Influence of backwashing on the microbial community in a biofilm developed on biological activated carbon used in a drinking water treatment plant. Water Sci. Technol. 2007, 55(8):173-180.
26. Kormas K.A., Neofitou C., Pachiadaki M., Koufostathi E. Changes of the bacterial assemblages throughout an urban drinking water distribution system. Environmental Monitoring and Assessment 2010, 165(1):27-38.
27. Koubar M., Rodier M.H., Garduno R.A., Frere J. Passage through Tetrahymena tropicalis enhances the resistance to stress and the infectivity of Legionella pneumophila. FEMS Microbiology Letters 2011, 325(2):10-15.
28. Kuiper M.W., Valster R.M., Wullings B.A., Boonstra H., Smidt H., Van Der Kooij D. Quantitative detection of the free-living amoeba Hartmannella vermiformis in surface water by using real-time PCR. Appl. Environ. Microbiol. 2006, 72(9):5750-5756.
29. Kwon S., Moon E., Kim T.S., Hong S., Park H.D. Pyrosequencing Demonstrated Complex Microbial Communities in a Membrane Filtration System for a Drinking Water Treatment Plant. Microbes and Environments 2009, 26(10):149-155.
30. Lehtola M.J., Torvinen E., Kusnetsov J., Pitkanen T., Maunula L., Von Bonsdorff C.H., Martikainen P.J., Wilks S.A., Keevil C.W., Miettinen I.T. Survival of Mycobacterium avium, Legionella pneumophila, Escherichia coli, and Caliciviruses in drinking water-associated biofilms grown under high-shear turbulent flow. Appl. Environ. Microbiol. 2007, 73(9):2854-2859.
31. Le Dantec C., Duguet J.P., Montiel A., Dumoutier N., Dubrou S., Vincent V. Occurrence of mycobacteria in water treatment lines and in water distribution systems. Applied and Environmental Microbiology 2002, 68(11):5318-5325.
32. Lin W., Yu Z., Chen X., Liu R., Zhang H. Molecular characterization of natural biofilms from household taps with different materials: PVC, stainless steel, and cast iron in drinking water distribution system. Appl. Microbiol. Biotechnol. 2013, 97(18):8393-8401.
33. Lundberg D.S., Lebeis S.L., Paredes S.H., Yourstone S., Gehring J., Malfatti S., Tremblay J., Engelbrektson A., Kunin V., del Rio T.G. Defining the core Arabidopsis thaliana root microbiome. Nature 2012, 488(7409):86-90.
34. Marciano-Cabral F., Jamerson M., Kaneshiro E.S. Free-living amoebae, Legionella and Mycobacterium in tap water supplied by a municipal drinking water utility in the USA. Journal of Water and Health 2010, 8(1):71-82.
35. Martiny A.C., Albrechtsen H.J., Arvin E., Molin S. Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp. Appl. Environ. Microbiol. 2005, 71(12):8611-8617.
36. Mathieu L., Bouteleux C., Fass S., Angel E., Block J. Reversible shift in the [alpha]-,[beta]-and [gamma]-proteobacteria populations of drinking water biofilms during discontinuous chlorination. Water Res. 2009, 43(14):3375-3386.
37. Mauclaire L., Schurmann A., Thullner M., Zeyer J., Gammeter S. Sand filtration in a water treatment plant: biological parameters responsible for clogging. Aqua 2004, 53:93-108.
38. Mendum T.A., Chilima B.Z., Hirsch P.R. The PCR amplification of non-tuberculous Mycobacterial 16S rRNA sequences from soil. FEMS Microbiol. Lett. 2006, 185(2):189-192.
39. Otterholt E., Charnock C. Identification and phylogeny of the small eukaryote population of raw and drinking waters. Water Research 2011, 45(8):2527-2538.
40. Pang C.M., Liu W.T. Community structure analysis of reverse osmosis membrane biofilms and the significance of Rhizobiales bacteria in biofouling. Environ. Sci. Technol. 2007, 41(13):4728-4734.
41. Pinto A.J., Xi C.W., Raskin L. Bacterial Community Structure in the Drinking Water Microbiome Is Governed by Filtration Processes. Environmental Science & Technology 2012, 46(16):8851-8859.
42. Poitelon J.B., Joyeux M., Welt B., Duguet J.P., Prestel E., Lespinet O., DuBow M.S. Assessment of phylogenetic diversity of bacterial microflora in drinking water using serial analysis of ribosomal sequence tags. Water Res. 2009, 43(17):4197-4206.
43. Poitelon J.B., Joyeux M., Welte B., Duguet J.P., Peplies J., DuBow M.S. Identification and phylogeny of eukaryotic 18S rDNA phylotypes detected in chlorinated finished drinking water samples from three Parisian surface water treatment plants. Letters in Applied Microbiology 2009, 49(5):589-595.
44. Poitelon J.B., Joyeux M., Welt B., Duguet J.P., Prestel E., DuBow M.S. Variations of bacterial 16S rDNA phylotypes prior to and after chlorination for drinking water production from two surface water treatment plants. Journal of Industrial Microbiology and Biotechnology 2010, 37(2):117-128.
45. Revetta R.P., Matlib R.S., Santo Domingo J.W. 16S rRNA gene sequence analysis of drinking water using RNA and DNA extracts as targets for clone library development. Curr. Microbiol. 2011, 63(1):1-10.
46. Revetta R.P., Pemberton A., Lamendella R., Iker B., Santo Domingo J.W. Identification of bacterial populations in drinking water using 16S rRNA-based sequence analyses. Water Research 2010, 44(5):1353-1360.
47. Roeder R.S., Lenz J., Tarne P., Gebel J., Exner M., Szewzyk U. Long-term effects of disinfectants on the community composition of drinking water biofilms. International Journal of Hygiene and Environmental Health 2010, 213(3):183-189.
48. Roh S.W., Kim K.H., Nam Y.D., Chang H.W., Park E.J., Bae J.W. Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing. Isme Journal 2010, 4(1):1-16.
49. Simoes L.C., Simoes M., Vieira M.J. Biofilm interactions between distinct bacterial genera isolated from drinking water. Applied and Environmental Microbiology 2007, 73(19):6192-6200.
50. Simoes M., Simoes L.C., Vieira M.J. Species association increases biofilm resistance to chemical and mechanical treatments. Water Res. 2009, 43(1):229-237.
51. Sturgeon A., Stull J.W., Costa M.C., Weese J.S. Metagenomic analysis of the canine oral cavity as revealed by high-throughput pyrosequencing of the 16S rRNA gene. Veterinary Microbiology 2013, 162:891-898.
52. Tombes A., Abernathy A., Welch D., Lewis S. The relationship between rainfall and Nematode density in drinking water. Water Res. 1979, 13(7):619-622.
53. Valster R.M., Wullings B.A., Bakker G., Smidt H., Van Der Kooij D. Free-living protozoa in two unchlorinated drinking water supplies, identified by phylogenic analysis of 18S rRNA gene sequences. Appl. Environ. Microbiol. 2009, 75(14):4736-4746.
54. Vaerewijck M.J.M., Huys G., Palomino J.C., Swings J., Portaels F. Mycobacteria in drinking water distribution systems: ecology and significance for human health. FEMS Microbiology Reviews 2005, 29(5):911-934.
55. Wery N., Bru-Adan V., Minervini C., Delgenes J.P., Garrelly L., Godon J.J. Dynamics of Legionella spp. and bacterial populations during the proliferation of L. pneumophila in a cooling tower facility. Appl. Environ. Microbiol. 2008, 74(10):3030-3037.
56. Williams M., Domingo J., Meckes M., Kelty C., Rochon H. Phylogenetic diversity of drinking water bacteria in a distribution system simulator. Journal of Applied Microbiology 2004, 96(5):954-964.
57. Wullings B.A., Bakker G., van der Kooij D. Concentration and diversity of uncultured Legionella spp. in two unchlorinated drinking water supplies with different concentrations of natural organic matter. Appl. Environ. Microbiol. 2011, 77(2):634-640.
58. Ye L., Zhang T. Pathogenic bacteria in sewage treatment plants as revealed by 454 pyrosequencing. Environ. Sci. Technol. 2011, 45:7173-7179.
59. Zhang M.L., Liu W.J., Nie X.B., Li C.P., Gu J.N., Zhang C. Molecular analysis of bacterial communities in biofilms of a drinking water clearwell. Microbes Environ. 2012, 27(4):443-448.
60. Zhang H., Parameswaran P., Badalamenti J., Rittmann B.E., Krajmalnik-Brown R. Integrating High-Throughput Pyrosequencing and Quantitative Real-Time PCR to Analyze Complex Microbial Communities. High-Throughput Next Generation Sequencing: Methods and Application 2011, 107-128. Humana Press Inc, Totowa. Y.M. Kwon, S.C. Ricke (Eds.).