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Volumn 30, Issue 7, 2014, Pages 1020-1021

Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CODON; COMPUTER PROGRAM; MUTATION; PHYLOGENY;

EID: 84897452510     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt729     Document Type: Article
Times cited : (51)

References (11)
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    • Chang, B.S.W.1
  • 2
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  • 3
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    • CodonPhyML: Fast maximum likelihood phylogeny estimation under codon substitution models
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    • (2013) Mol. Biol. Evol. , vol.30 , pp. 1270-1280
    • Gil, M.1
  • 4
    • 0031875569 scopus 로고    scopus 로고
    • Evolutionary distances for protein-coding sequences: Modeling site-specific residue frequencies
    • Halpern, A.L. and Bruno, W.J. (1998) Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies. Mol. Biol. Evol., 15, 910-917.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 910-917
    • Halpern, A.L.1    Bruno, W.J.2
  • 5
    • 84881629698 scopus 로고    scopus 로고
    • PhyloBayes-MPI: Phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment
    • Lartillot, N. et al. (2013) PhyloBayes-MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment. Syst. Biol., 62, 611-615.
    • (2013) Syst. Biol. , vol.62 , pp. 611-615
    • Lartillot, N.1
  • 6
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    • Integrating sequence variation and protein structure to identify sites under selection
    • Meyer, A.G. and Wilke, C.O. (2013) Integrating sequence variation and protein structure to identify sites under selection. Mol. Biol. Evol., 30, 36-44.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 36-44
    • Meyer, A.G.1    Wilke, C.O.2
  • 7
    • 84876372052 scopus 로고    scopus 로고
    • On the statistical interpretation of site-specific variables in phylogeny-based substitution models
    • Rodrigue, N. (2013) On the statistical interpretation of site-specific variables in phylogeny-based substitution models. Genetics, 193, 557-564.
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  • 8
    • 77949536563 scopus 로고    scopus 로고
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    • Rodrigue, N. et al. (2010) Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles. Proc. Natl. Acad. Sci. USA, 107, 4629-4634.
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    • Estimating the distribution of selection coefficients from phylogenetic data using sitewise mutation-selection models
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