JEPETTO: A Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks

Bioinformatics

Volumn 30, Issue 7, 2014, Pages 1029-1030

  Winterhalter, Charles ^a   Widera, Paweł ^b   Krasnogor, Natalio ^b  

^a UNIVERSITÉ D EVRY VAL D ESSONNE   (France)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALZHEIMER DISEASE; ARTICLE; COMPUTER PROGRAM; GENE EXPRESSION REGULATION; GENETICS; HUMAN; PROTEIN PROTEIN INTERACTION;

ALZHEIMER DISEASE; GENE EXPRESSION REGULATION; HUMANS; PROTEIN INTERACTION MAPS; SOFTWARE;

EID: 84897413353     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt732     Document Type: Article

References (6)

1. Glaab, E. et al. (2010a) Extending pathways and processes using molecular interaction networks to analyse cancer genome data. BMC Bioinformatics, 11, 597.
2. Glaab, E. et al. (2010b) TopoGSA: network topological gene set analysis. Bioinformatics, 26, 1271-1272.
3. Glaab, E. et al. (2012) EnrichNet: network-based gene set enrichment analysis. Bioinformatics, 28, i451-i457.
4. Shannon, P. et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
5. Shioya, M. et al. (2010) Aberrant microRNA expression in the brains of neurodegenerative diseases: miR-29a decreased in Alzheimer disease brains targets neurone navigator 3. Neuropath. Appl. Neuro., 36, 320.
6. Yoshiyama, Y. et al. (2000) Selective distribution of matrix metalloproteinase-3 (MMP-3) in Alzheimer's disease brain. Acta Neuropathol., 99, 91-95.