Characterization of Juquitiba virus in Oligoryzomys fornesi from Brazilian Cerrado

Viruses

Volumn 6, Issue 4, 2014, Pages 1473-1482

  Guterres, Alexandro ^a,b   de Oliveira, Renata Carvalho ^a   Fernandes, Jorlan ^a   Strecht, Liana ^a   Casado, Flavia ^a   de Oliveira, Flavio Cesar Gomes ^a   D'Andrea, Paulo Sérgio ^a   Bonvicino, Cibele Rodrigues ^a,c   Schrago, Carlos Guerra ^b   de Lemos, Elba Regina Sampaio ^a  

^a INSTITUTO OSWALDO CRUZ   (Brazil)

^b FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^c INSTITUTO NACIONAL DE CÂNCER   (Brazil)

Author keywords

Hantavirus cardiopulmonary syndrome; Host switching; Juquitiba virus; Oligoryzomys fornesi

Indexed keywords

COMPLEMENTARY DNA; GENOMIC RNA; NUCLEOCAPSID PROTEIN; VIRUS RNA;

ANIMAL TISSUE; ARTICLE; BAYES THEOREM; BRAZIL; HANTAVIRUS; HANTAVIRUS PULMONARY SYNDROME; JUQUITIBA VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RAT; RICE RAT; SEOUL VIRUS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SEROPREVALENCE; STRUCTURAL GENOMICS; UNINDEXED SEQUENCE; VIRUS CHARACTERIZATION; ANIMAL; CLASSIFICATION; DISEASE CARRIER; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; LUNG; RNA VIRUS; SIGMODONTINAE; VIROLOGY; VIRUS GENOME;

ANIMALS; BRAZIL; DISEASE RESERVOIRS; GENOME, VIRAL; HANTAVIRUS; LUNG; RNA VIRUSES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SIGMODONTINAE;

EID: 84897147346     PISSN: 19994915     EISSN: None     Source Type: Journal    
DOI: 10.3390/v6041473     Document Type: Article

References (33)

1. Jonsson, C. B.; Figueiredo, L. T. M.; Vapalahti, O. A. Global perspective on hantavirus ecology, epidemiology, and disease. Clin. Microbiol. Rev. 2010, 23, 412-441.
2. Watson, D. C.; Sargianou, M.; Papa, A.; Chra, P.; Starakis, I.; Panos, G. Epidemiology of Hantavirus infections in humans: A comprehensive, global overview. Crit. Rev. Microbiol. 2013, 7828, 1-12.
3. Hjelle, B.; Torres-Pérez, F. Hantaviruses in the americas and their role as emerging pathogens. Viruses 2010, 2, 2559-2586.
4. Mills, J. N. Biodiversity loss and emerging infectious disease: An example from the rodent-borne hemorrhagic fevers. Biodiversity 2006, 7, 9-17.
5. Musser, G. G.; Carleton, M. D. Superfamily muroidea. In Mammal Species of the World: A Taxonomic and Geographic Reference; Wilson, D. E., Reeder, D. M., Eds.; Johns Hopkins University Press: Baltimore, MD, USA, 2005; pp. 849-1531.
6. Childs, J. E.; Ksiazek, T. G.; Spiropoulou, C. F.; Krebs, J. W.; Morzunov, S.; Maupin, G. O.; Gage, K. L.; Rollin, P. E.; Sarisky, J.; Enscore, R. E. Serologic and genetic identification of Peromyscus maniculatus as the primary rodent reservoir for a new hantavirus in the southwestern United States. J. Infect. Dis. 1994, 169, 1271-1280.
7. Delfraro, A.; Tomé, L.; D'Elía, G.; Clara, M.; Achával, F.; Russi, J. C.; Rodonz, J. R. A. Juquitiba-like hantavirus from 2 nonrelated rodent species, Uruguay. Emerg. Infect. Dis. 2008, 14, 1447-1451.
8. De Oliveira, R. C.; Guterres, A.; Schrago, C. G.; Fernandes, J.; Teixeira, B. R.; Zeccer, S.; Bonvicino, C. R.; D'Andrea, P. S.; de Lemos, E. R. S. Detection of the first incidence of Akodon paranaensis naturally infected with the Jabora virus strain (Hantavirus) in Brazil. Mem. Inst. Oswaldo Cruz 2012, 107, 424-428.
9. Raboni, S. M.; Hoffmann, F. G.; Oliveira, R. C.; Teixeira, B. R.; Bonvicino, C. R.; Stella, V.; Carstensen, S.; Bordignon, J.; D'Andrea, P. S.; Lemos, E. R. S.; et al. Phylogenetic characterization of hantaviruses from wild rodents and hantavirus pulmonary syndrome cases in the state of Paraná (southern Brazil). J. Gen. Virol. 2009, 90, 2166-2171.
10. Rosa, E. S. T.; Mills, J. N.; Padula, P. J.; Elkhoury, M. R.; Ksiazek, T. G.; Mendes, W. S.; Santos, E. D.; Araújo, G. C. B.; Martinez, V. P.; Rosa, J. F. S. T.; et al. Newly recognized hantaviruses associated with hantavirus pulmonary syndrome in northern Brazil: Partial genetic characterization of viruses and serologic implication of likely reservoirs. Vector Borne Zoonotic Dis. 2005, 5, 11-19.
11. Guterres, A.; de Oliveira, R. C.; Fernandes, J.; D'Andrea, P. S.; Bonvicino, C. R.; Bragagnolo, C.; Guimarães, G. D.; Almada, G. L.; Machado, R. R.; Lavocat, M.; et al. Phylogenetic analysis of the S segment from Juquitiba hantavirus: Identification of two distinct lineages in Oligoryzomys nigripes. Infect. Genet. Evol. 2013, 18, 262-268.
12. Gouy, M.; Guindon, S.; Gascuel, O. SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol. 2010, 27, 221-224.
13. Ronquist, F.; Huelsenbeck, J. P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19, 1572-1574.
14. Anisimova, M.; Gascuel, O. Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst. Biol. 2006, 55, 539-552.
15. Chu, Y. K.; Goodin, D.; Owen, R. D.; Koch, D.; Jonsson, C. B. Sympatry of 2 hantavirus strains, paraguay, 2003-2007. Emerg. Infect. Dis. 2009, 15, 1977-1980.
16. Chu, Y.-K.; Owen, R. D.; Jonsson, C. B. Phylogenetic exploration of hantaviruses in Paraguay reveals reassortment and host switching in South America. Virol. J. 2011, 8, doi: 10. 1186/1743-422X-8-399.
17. Weksler, M.; Bonvicino, C. R. Taxonomy of pigmy rice rats genus oligoryzomys banGS, 1900 (Rodentia, Sigmodontinae) of the Brazilian cerrado. Arq. do Mus. Nac. 2005, 63, 113-130.
18. De Oliveira, R. C.; Padula, P. J.; Gomes, R.; Martinez, V. P.; Bellomo, C.; Bonvicino, C. R.; Freiree Lima, D. I.; Bragagnolo, C.; Caldas, A. C. S.; D'Andrea, P. S.; et al. Genetic characterization of hantaviruses associated with sigmodontine rodents in an endemic area for hantavirus pulmonary syndrome in southern Brazil. Vector Borne Zoonotic Dis. 2011, 11, 301-314.
19. Lin, X.-D.; Wang, W.; Guo, W.-P.; Zhang, X.-H.; Xing, J.-G.; Chen, S.-Z.; Li, M.-H.; Chen, Y.; Xu, J.; Plyusnin, A.; et al. Cross-species transmission in the speciation of the currently known murinae-associated hantaviruses. J. Virol. 2012, 86, 11171-11182.
20. Guo, W.-P.; Lin, X.-D.; Wang, W.; Tian, J.-H.; Cong, M.-L.; Zhang, H.-L.; Wang, M.-R.; Zhou, R.-H.; Wang, J.-B.; Li, M.-H.; et al. Phylogeny and origins of hantaviruses harbored by bats, insectivores, and rodents. PLoS Pathog. 2013, 9, e1003159.
21. Yadav, P. D.; Vincent, M. J.; Nichol, S. T. Thottapalayam virus is genetically distant to the rodent-borne hantaviruses, consistent with its isolation from the Asian house shrew (Suncus murinus). Virol. J. 2007, 4, doi: 10. 1186/1743-422X-4-80.
22. Lloyd-Smith, J. O.; George, D.; Pepin, K. M.; Pitzer, V. E.; Pulliam, J. R. C.; Dobson, A. P.; Hudson, P. J.; Grenfell, B. T. Epidemic dynamics at the human-animal interface. Science 2009, 326, 1362-1367.
23. Allen, L. J. S.; Wesley, C. L.; Owen, R. D.; Goodin, D. G.; Koch, D.; Jonsson, C. B.; Chu, Y.-K.; Shawn Hutchinson, J. M.; Paige, R. L. A habitat-based model for the spread of hantavirus between reservoir and spillover species. J. Theor. Biol. 2009, 260, 510-522.
24. Johnson, A. M.; Bowen, M. D.; Ksiazek, T. G.; Williams, R. J.; Bryan, R. T.; Mills, J. N.; Peters, C. J.; Nichol, S. T. Laguna Negra virus associated with HPS in western Paraguay and Bolivia. Virology 1997, 238, 115-127.
25. Levis, S.; Garcia, J.; Pini, N.; Calderón, G.; Ramírez, J.; Bravo, D.; St Jeor, S.; Ripoll, C.; Bego, M.; Lozano, E.; et al. Hantavirus pulmonary syndrome in northwestern Argentina: Circulation of Laguna Negra virus associated with Calomys callosus. Am. J. Trop. Med. Hyg. 2004, 71, 658-663.
26. Travassos Da Rosa, E. S.; Medeiros, D. B. A.; Nunes, M. R. T.; Simith, D. B.; Pereira, A. D. S.; Elkhoury, M. R.; Santos, E. D.; Lavocat, M.; Marques, A. A.; Via, A. V. G.; et al. Molecular epidemiology of Laguna Negra virus, Mato Grosso State, Brazil. Emerg. Infect. Dis. 2012, 18, 982-985.
27. D'Elía, G.; Luna, L.; González, E. M.; Patterson, B. D. On the Sigmodontinae radiation (Rodentia, Cricetidae): An appraisal of the phylogenetic position of Rhagomys. Mol. Phylogenet. Evol. 2006, 38, 558-564.
28. Parada, A.; Pardiñas, U. F. J.; Salazar-Bravo, J.; D'Elía, G.; Palma, R. E. Dating an impressive Neotropical radiation: Molecular time estimates for the Sigmodontinae (Rodentia) provide insights into its historical biogeography. Mol. Phylogenet. Evol. 2013, 66, 960-968.
29. Miranda, G. B.; Oliveira, L. F. B.; Andrades-Miranda, J.; Langguth, A.; Callegari-Jacques, S. M.; Mattevi, M. S. Phylogenetic and phylogeographic patterns in sigmodontine rodents of the genus oligoryzomys. J. Hered. 2009, 100, 309-321.
30. Raboni, S. M.; Delfraro, A.; de Borba, L.; Teixeira, B. R.; Stella, V.; de Araujo, M. R.; Carstensen, S.; Rubio, G.; Maron, A.; Lemos, E. R.; et al. Hantavirus infection prevalence in wild rodents and human anti-hantavirus serological profiles from different geographic areas of South Brazil. Am. J. Trop. Med. Hyg. 2012, 87, 371-378.
31. Ramsden, C.; Melo, F. L.; Figueiredo, L. M.; Holmes, E. C.; Zanotto, P. M. A high rates of molecular evolution in hantaviruses. Mol. Biol. Evol. 2008, 25, 1488-1492.
32. Oliveira, R. C.; Teixeira, B. R.; Mello, F. C.; Pereira, P.; Duarte, S.; Bonaldo, M. C.; Bonvicino, C. R.; D'Andrea, P. S.; Lemos, E. R. S. Genetic characterization of a Juquitiba-like viral lineage in Oligoryzomys nigripes in Rio de Janeiro, Brazil. Acta Trop. 2009, 112, 212-218.
33. Padula, P.; Martinez, V. P.; Bellomo, C.; Maidana, S.; San Juan, J.; Tagliaferri, P.; Bargardi, S.; Vazquez, C.; Colucci, N.; Estévez, J.; et al. Pathogenic hantaviruses, northeastern Argentina and eastern Paraguay. Emerg. Infect. Dis. 2007, 13, 1211-1214.