Sulfate-dependent acetate oxidation under extremely natron-alkaline conditions by syntrophic associations from hypersaline soda lakes

Microbiology (United Kingdom)

Volumn 160, Issue PART 4, 2014, Pages 723-732

  Sorokin, Dimitry Y ^a,b   Abbas, Ben ^b   Tourova, Tatjana P ^a   Bumazhkin, Boris K ^c   Kolganova, Tatjana V ^c   Muyzer, Gerard ^d  

^a WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

^b DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^c INSTITUTE OF BIOENGINEERING   (Russian Federation)

^d UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; SODIUM CARBONATE; SODIUM CHLORIDE; SULFATE;

ALKALINITY; ANAEROBIC BACTERIUM; ARTICLE; CLOSTRIDIALES; CLOSTRIDIUM; CONTUBERNALIS ALKALACETICUM; DESULFONATRONOSPIRA; DESULFONATRONUM COOPERATIVUM; DESULFONATRONUM THIODISMUTANS; ENRICHMENT CULTURE; GENUS; LAKE; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PRIORITY JOURNAL; RUSSIAN FEDERATION; SALT TOLERANCE; SULFATE REDUCING BACTERIUM; SYNTROPHOMONADACEAE; SYNTROPHONATRONUM ACETIOXIDANS;

EID: 84897083105     PISSN: 13500872     EISSN: 14652080     Source Type: Journal    
DOI: 10.1099/mic.0.075093-0     Document Type: Article

References (31)

1. Brown, S. D., Begemann, M. B., Mormile, M. R., Wall, J. D., Han, C. S., Goodwin, L. A., Pitluck, S., Land, M. L., Hauser, L. J. & Elias, D. A. (2011). Complete genome sequence of the haloalkaliphilic, hydrogenproducing bacterium Halanaerobium hydrogenoformans. J Bacteriol 193, 3682-3683.
2. Geets, J., Borremans, B., Diels, L., Springael, D., Vangronsveld, J., van der Lelie, D. & Vanbroekhoven, K. (2006). DsrB gene-based DGGE for community and diversity surveys of sulfate-reducing bacteria. J Microbiol Methods 66, 194-205.
3. Gorlenko, V. M., Namsaraev, B. B., Kulyrova, A. V., Zavarzina, D. G. & Zhilina, T. N. (1999). Activity of sulfate-reducing bacteria in the sediments of the soda lakes in south-east Transbaikal area. Microbiology (English translation of Mikrobiologiia) 68, 580-586.
4. Kevbrin, V. V., Zhilina, T. N. & Zavarzin, G. A. (1999). Decomposition of cellulose by the anaerobic alkaliphilic microbial community. Microbiology (English translation of Mikrobiologiia) 68, 601-609.
5. Kulp, T. R., Hoeft, S. E., Miller, L. G., Saltikov, C., Murphy, J. N., Han, S., Lanoil, B. & Oremland, R. S. (2006). Dissimilatory arsenate and sulfate reduction in sediments of two hypersaline, arsenic-rich soda lakes: Mono and Searles Lakes, California. Appl Environ Microbiol 72, 6514-6526.
6. Kulp, T. R., Han, S., Saltikov, C. W., Lanoil, B. D., Zargar, K. & Oremland, R. S. (2007). Effects of imposed salinity gradients on dissimilatory arsenate reduction, sulfate reduction, and other microbial processes in sediments from two California soda lakes. Appl Environ Microbiol 73, 5130-5137.
7. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-177. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
8. Lowry, O. H., Rosebrough, N. J., Farr, A. L. & Randall, R. J. (1951). Protein measurement with the Folin phenol reagent. J Biol Chem 193, 265-275.
9. Loy, A., Duller, S., Baranyi, C., Mussmann, M., Ott, J., Sharon, I., Béja, O., Le Paslier, D., Dahl, C. & Wagner, M. (2009). Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfuroxidizing prokaryotes. Environ Microbiol 11, 289-299.
10. McInerney, M. J., Struchtemeyer, C. G., Sieber, J., Mouttaki, H., Stams, A. J. M., Schink, B., Rohlin, L. & Gunsalus, R. P. (2008). Physiology, ecology, phylogeny, and genomics of microorganisms capable of syntrophic metabolism. Ann N Y Acad Sci 1125, 58-72.
11. Oren, A. (2011). Thermodynamic limits to microbial life at high salt concentrations. Environ Microbiol 13, 1908-1923.
12. Pfennig, N. & Lippert, K. D. (1966). Über das Vitamin B12-bedürfnis phototropher Schwefel bacterien. Arch Mikrobiol 55, 245-256.
13. Pikuta, E. V., Zhilina, T. N., Zavarzin, G. A., Kostrikina, N. A., Osipov, G. A. & Rainey, F. A. (1998). Desulfonatronum lacustre gen. nov., sp. nov.: a new alkaliphilic sulfate-reducing bacterium utilizing ethanol. Microbiology (English translation of Mikrobiologiia) 67, 105-113.
14. Pikuta, E. V., Hoover, R. B., Bej, A. K., Marsic, D., Whitman, W. B., Cleland, D. & Krader, P. (2003). Desulfonatronum thiodismutans sp. nov., a novel alkaliphilic, sulfate-reducing bacterium capable of lithoautotrophic growth. Int J Syst Evol Microbiol 53, 1327-1332.
15. Plugge, C. M. (2005). Anoxic media design, preparation, and considerations. Methods Enzymol 397, 3-16.
16. Schäfer, H. & Muyzer, G. (2001). Denaturing gradient gel electrophoresis in marine microbial ecology. Methods Microbiol 30, 425-468.
17. Schink, B. & Stams, A. J. M. (2006). Syntrophism among Prokaryotes. In The Prokaryotes, 3nd edn, vol. 2, pp. 309-335. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
18. Sorokin, D. Y. & Muyzer, G. (2010). Desulfurispira natronophila gen. nov. sp. nov.: an obligately anaerobic dissimilatory sulfur-reducing bacterium from soda lakes. Extremophiles 14, 349-355.
19. Sorokin, D. Y., Gorlenko, V. M., Namsaraev, B. B., Namsaraev, Z. B., Lysenko, A. M., Eshinimaev, B. T., Khmelenina, V. N., Trotsenko, Y. A. & Kuenen, J. G. (2004). Prokaryotic communities of the north-eastern Mongolian soda lakes. Hydrobiologia 522, 235-248.
20. Sorokin, D. Y., Tourova, T. P., Henstra, A. M., Stams, A. J. M., Galinski, E. A. & Muyzer, G. (2008). Sulfidogenesis under extremely haloalkaline conditions by Desulfonatronospira thiodismutans gen. nov., sp. nov., and Desulfonatronospira delicata sp. nov.-a novel lineage of Deltaproteobacteria from hypersaline soda lakes. Microbiology 154, 1444-1453.
21. Sorokin, D. Y., Rusanov, I. I., Pimenov, N. V., Tourova, T. P., Abbas, B. & Muyzer, G. (2010a). Sulfidogenesis under extremely haloalkaline conditions in soda lakes of Kulunda Steppe (Altai, Russia). FEMS Microbiol Ecol 73, 278-290.
22. Sorokin, D. Y., Detkova, E. N. & Muyzer, G. (2010b). Propionate and butyrate dependent bacterial sulfate reduction at extremely haloalkaline conditions and description of Desulfobotulus alkaliphilus sp. nov. Extremophiles 14, 71-77.
23. Sorokin, D. Y., Kuenen, J. G. & Muyzer, G. (2011a). The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes. Front Microbiol 2, 44.
24. Sorokin, D. Y., Tourova, T. P., Kolganova, T. V., Detkova, E. N., Galinski, E. A. & Muyzer, G. (2011b). Culturable diversity of lithotrophic haloalkaliphilic sulfate-reducing bacteria in soda lakes and the description of Desulfonatronum thioautotrophicum sp. nov., Desulfonatronum thiosulfatophilum sp. nov., Desulfonatronovibrio thiodismutans sp. nov., and Desulfonatronovibrio magnus sp. nov. Extremophiles 15, 391-401.
25. Sorokin, D. Y., Panteleeva, A. N., Tourova, T. P. & Muyzer, G. (2012). Desulfonatronobacter acidivorans gen. nov., sp. nov. and Desulfobulbus alkaliphilus sp. nov., haloalkaliphilic heterotrophic sulfatereducing bacteria from soda lake. Int J Syst Evol Microbiol 62, 2107-2113.
26. Stams, A. J. M. & Plugge, C. M. (2009). Electron transfer in syntrophic communities of anaerobic bacteria and archaea. Nat Rev Microbiol 7, 568-577.
27. Trüper, H. G. & Schlegel, H. G. (1964). Sulfur metabolism in Thiorhodaceae. 1. Quantitative measurements on growing cells of Chromatium okenii. Antonie van Leeuwenhoek 30, 225-238.
28. Wagner, M., Roger, A. J., Flax, J. L., Brusseau, G. A. & Stahl, D. A. (1998). Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J Bacteriol 180, 2975-2982.
29. Zhilina, T. N., Zavarzin, G. A., Rainey, F. A., Pikuta, E. N., Osipov, G. A. & Kostrikina, N. A. (1997). Desulfonatronovibrio hydrogenovorans gen. nov., sp. nov., an alkaliphilic, sulfate-reducing bacterium. Int J Syst Bacteriol 47, 144-149.
30. Zhilina, T. N., Zavarzina, D. G., Kuever, J., Lysenko, A. M. & Zavarzin, G. A. (2005a). Desulfonatronum cooperativum sp. nov., a novel hydrogenotrophic, alkaliphilic, sulfate-reducing bacterium, from a syntrophic culture growing on acetate. Int J Syst Evol Microbiol 55, 1001-1006.
31. Zhilina, T. N., Zavarzina, D. G., Kolganova, T. V., Turova, T. P. & Zavarzin, G. A. (2005b). ["Candidatus Contubernalis alkalaceticum", an obligately syntrophic alkaliphilic bacterium capable of anaerobic acetate oxidation in a coculture with Desulfonatronum cooperativum.] Mikrobiologiia 74, 800-809 (in Russian).