-
1
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
DOI 10.1126/science.1104816
-
Bäckhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI (2005) Host-Bacterial Mutualism in the Human Intestine. Science 307: 1915-1920. (Pubitemid 40404694)
-
(2005)
Science
, vol.307
, Issue.5717
, pp. 1915-1920
-
-
Backhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
2
-
-
79959201412
-
Human nutrition, the gut microbiome and the immune system
-
Kau AL, Ahern PP, Griffin NW, Goodman AL, Gordon JI (2011) Human nutrition, the gut microbiome and the immune system. Nature 474: 327-336.
-
(2011)
Nature
, vol.474
, pp. 327-336
-
-
Kau, A.L.1
Ahern, P.P.2
Griffin, N.W.3
Goodman, A.L.4
Gordon, J.I.5
-
3
-
-
74249119678
-
Obesity and the human microbiome
-
10.1097/MOG.1090b1013e328333d328751
-
Ley RE (2010) Obesity and the human microbiome. Current Opinion in Gastroenterology 26: 5-11 10.1097/MOG.1090b1013e328333d328751.
-
(2010)
Current Opinion in Gastroenterology
, vol.26
, pp. 5-11
-
-
Ley, R.E.1
-
4
-
-
69549086653
-
Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora
-
Sommer MOA, Dantas G, Church GM (2009) Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora. Science 325: 1128-1131.
-
(2009)
Science
, vol.325
, pp. 1128-1131
-
-
Sommer, M.O.A.1
Dantas, G.2
Church, G.M.3
-
5
-
-
69949111703
-
The core gut microbiome, energy balance and obesity
-
Turnbaugh PJ, Gordon JI (2009) The core gut microbiome, energy balance and obesity. The Journal of Physiology 587: 4153-4158.
-
(2009)
The Journal of Physiology
, vol.587
, pp. 4153-4158
-
-
Turnbaugh, P.J.1
Gordon, J.I.2
-
6
-
-
84355161776
-
The oral metagenome in health and disease
-
Belda-Ferre P, Alcaraz LD, Cabrera-Rubio R, Romero H, Simon-Soro A, et al. (2012) The oral metagenome in health and disease. ISME J 6: 46-56.
-
(2012)
ISME J
, vol.6
, pp. 46-56
-
-
Belda-Ferre, P.1
Alcaraz, L.D.2
Cabrera-Rubio, R.3
Romero, H.4
Simon-Soro, A.5
-
7
-
-
84876842615
-
The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation
-
Abusleme L, Dupuy AK, Dutzan N, Silva N, Burleson JA, et al. (2013) The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation. ISME J 7: 1016-1025.
-
(2013)
ISME J
, vol.7
, pp. 1016-1025
-
-
Abusleme, L.1
Dupuy, A.K.2
Dutzan, N.3
Silva, N.4
Burleson, J.A.5
-
8
-
-
84861342868
-
Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing
-
Griffen AL, Beall CJ, Campbell JH, Firestone ND, Kumar PS, et al. (2012) Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing. ISME J 6: 1176-1185.
-
(2012)
ISME J
, vol.6
, pp. 1176-1185
-
-
Griffen, A.L.1
Beall, C.J.2
Campbell, J.H.3
Firestone, N.D.4
Kumar, P.S.5
-
9
-
-
0020135017
-
The microbiology of dental caries
-
Hardie JM (1982) The microbiology of dental caries. Dent Update 9: 199-200.
-
(1982)
Dent Update
, vol.9
, pp. 199-200
-
-
Hardie, J.M.1
-
10
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
Qin J, Li Y, Cai Z, Li S, Zhu J, et al. (2012) A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490: 55-60.
-
(2012)
Nature
, vol.490
, pp. 55-60
-
-
Qin, J.1
Li, Y.2
Cai, Z.3
Li, S.4
Zhu, J.5
-
11
-
-
84866168894
-
Functional interactions between the gut microbiota and host metabolism
-
Tremaroli V, Backhed F (2012) Functional interactions between the gut microbiota and host metabolism. Nature 489: 242-249.
-
(2012)
Nature
, vol.489
, pp. 242-249
-
-
Tremaroli, V.1
Backhed, F.2
-
12
-
-
79960501919
-
Interaction Between Obesity and the Gut Microbiota: Relevance in Nutrition
-
Delzenne NM, Cani PD (2011) Interaction Between Obesity and the Gut Microbiota: Relevance in Nutrition. Annual Review of Nutrition 31: 15-31.
-
(2011)
Annual Review of Nutrition
, vol.31
, pp. 15-31
-
-
Delzenne, N.M.1
Cani, P.D.2
-
13
-
-
0017341656
-
Microbial ecology of the gastrointestinal tract
-
Savage DC (1977) Microbial ecology of the gastrointestinal tract. Annu Rev Microbiol 31: 107-133.
-
(1977)
Annu Rev Microbiol
, vol.31
, pp. 107-133
-
-
Savage, D.C.1
-
14
-
-
0030297089
-
The indigenous gastrointestinal microflora
-
Berg RD (1996) The indigenous gastrointestinal microflora. Trends Microbiol 4: 430-435.
-
(1996)
Trends Microbiol
, vol.4
, pp. 430-435
-
-
Berg, R.D.1
-
15
-
-
35348968286
-
The Human Microbiome Project
-
DOI 10.1038/nature06244, PII NATURE06244
-
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, et al. (2007) The Human Microbiome Project. Nature 449: 804-810. (Pubitemid 47598620)
-
(2007)
Nature
, vol.449
, Issue.7164
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
16
-
-
79955542723
-
Analysis of methanotroph community composition using a pmoA-based microbial diagnostic microarray
-
Stralis-Pavese N, Abell GCJ, Sessitsch A, Bodrossy L (2011) Analysis of methanotroph community composition using a pmoA-based microbial diagnostic microarray. Nat Protocols 6: 609-624.
-
(2011)
Nat Protocols
, vol.6
, pp. 609-624
-
-
Stralis-Pavese, N.1
Abell, G.C.J.2
Sessitsch, A.3
Bodrossy, L.4
-
17
-
-
77953121795
-
Comparing microarrays and next-generation sequencing technologies for microbial ecology research
-
Roh SW, Abell GCJ, Kim K-H, Nam Y-D, Bae J-W (2010) Comparing microarrays and next-generation sequencing technologies for microbial ecology research. Trends in biotechnology 28: 291-299.
-
(2010)
Trends in Biotechnology
, vol.28
, pp. 291-299
-
-
Roh, S.W.1
Abell, G.C.J.2
Kim, K.-H.3
Nam, Y.-D.4
Bae, J.-W.5
-
18
-
-
84856484915
-
Development of functional gene microarrays for microbial community analysis
-
He Z, Deng Y, Zhou J (2012) Development of functional gene microarrays for microbial community analysis. Current Opinion in Biotechnology 23: 49-55.
-
(2012)
Current Opinion in Biotechnology
, vol.23
, pp. 49-55
-
-
He, Z.1
Deng, Y.2
Zhou, J.3
-
19
-
-
33748805463
-
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
-
DOI 10.1128/AEM.00246-06
-
Brodie EL, DeSantis TZ, Joyner DC, Baek SM, Larsen JT, et al. (2006) Application of a High-Density Oligonucleotide Microarray Approach To Study Bacterial Population Dynamics during Uranium Reduction and Reoxidation. Applied and Environmental Microbiology 72: 6288-6298. (Pubitemid 44414663)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.9
, pp. 6288-6298
-
-
Brodie, E.L.1
DeSantis, T.Z.2
Joyner, D.C.3
Baek, S.M.4
Larsen, J.T.5
Andersen, G.L.6
Hazen, T.C.7
Richardson, P.M.8
Herman, D.J.9
Tokunaga, T.K.10
Wan, J.M.11
Firestone, M.K.12
-
20
-
-
84877842943
-
The Human Gut Chip "HuGChip", an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level
-
Tottey W, Denonfoux J, Jaziri F, Parisot N, Missaoui M, et al. (2013) The Human Gut Chip "HuGChip", an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level. PLoS ONE 8: e62544.
-
(2013)
PLoS ONE
, vol.8
-
-
Tottey, W.1
Denonfoux, J.2
Jaziri, F.3
Parisot, N.4
Missaoui, M.5
-
21
-
-
67649945513
-
Development and application of the human intestinal tract chip, a phylogenetic microarray: Analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
-
Rajilić-Stojanović M, Heilig HGHJ, Molenaar D, Kajander K, Surakka A, et al. (2009) Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environmental Microbiology 11: 1736-1751.
-
(2009)
Environmental Microbiology
, vol.11
, pp. 1736-1751
-
-
Rajilić-Stojanović, M.1
Heilig, H.G.H.J.2
Molenaar, D.3
Kajander, K.4
Surakka, A.5
-
22
-
-
66249145389
-
High-Throughput Quantitative Analysis of the Human Intestinal Microbiota with a Phylogenetic Microarray
-
Paliy O, Kenche H, Abernathy F, Michail S (2009) High-Throughput Quantitative Analysis of the Human Intestinal Microbiota with a Phylogenetic Microarray. Applied and Environmental Microbiology 75: 3572-3579.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 3572-3579
-
-
Paliy, O.1
Kenche, H.2
Abernathy, F.3
Michail, S.4
-
23
-
-
34547129847
-
Development of the Human Infant Intestinal Microbiota
-
Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO (2007) Development of the Human Infant Intestinal Microbiota. PLoS Biol 5: e177.
-
(2007)
PLoS Biol
, vol.5
-
-
Palmer, C.1
Bik, E.M.2
DiGiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
24
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, et al. (2009) A core gut microbiome in obese and lean twins. Nature 457: 480-484.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
-
25
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, et al. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
-
26
-
-
77956094278
-
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
-
He Z, Deng Y, Van Nostrand JD, Tu Q, Xu M, et al. (2010) GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J 4: 1167-1179.
-
(2010)
ISME J
, vol.4
, pp. 1167-1179
-
-
He, Z.1
Deng, Y.2
Van Nostrand, J.D.3
Tu, Q.4
Xu, M.5
-
27
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR (1998) Profile hidden Markov models. Bioinformatics 14: 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
28
-
-
77957357555
-
The human oral microbiome
-
Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, et al. (2010) The human oral microbiome. Journal of bacteriology 192: 5002-5017.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 5002-5017
-
-
Dewhirst, F.E.1
Chen, T.2
Izard, J.3
Paster, B.J.4
Tanner, A.C.5
-
30
-
-
53549118607
-
The metagenomics RAST server - A public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass E, et al. (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.5
-
31
-
-
38449088143
-
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
-
Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, et al. (2007) Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res 14: 169-181.
-
(2007)
DNA Res
, vol.14
, pp. 169-181
-
-
Kurokawa, K.1
Itoh, T.2
Kuwahara, T.3
Oshima, K.4
Toh, H.5
-
32
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
DOI 10.1093/nar/gkm882
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Research 36: D480-D484. (Pubitemid 351149770)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
33
-
-
27244449595
-
Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation
-
DOI 10.1093/nar/gki914
-
Li X, He Z, Zhou J (2005) Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation. Nucleic Acids Research 33: 6114-6123. (Pubitemid 41742550)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.19
, pp. 6114-6123
-
-
Li, X.1
He, Z.2
Zhou, J.3
-
34
-
-
35348843408
-
Clinical characteristics and microbiota of progressing slight chronic periodontitis in adults
-
Tanner ACR, Kent R, Kanasi E, Lu SC, Paster BJ, et al. (2007) Clinical characteristics and microbiota of progressing slight chronic periodontitis in adults. Journal of Clinical Periodontology 34: 917-930.
-
(2007)
Journal of Clinical Periodontology
, vol.34
, pp. 917-930
-
-
Tanner, A.C.R.1
Kent, R.2
Kanasi, E.3
Lu, S.C.4
Paster, B.J.5
-
35
-
-
84897042788
-
-
People's Medical Publishing House
-
Meng H (2008) Periodontology: People's Medical Publishing House. 156-157 p.
-
(2008)
Periodontology
, pp. 156-157
-
-
Meng, H.1
-
36
-
-
33746095025
-
Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification
-
DOI 10.1128/AEM.02738-05
-
Wu L, Liu X, Schadt CW, Zhou J (2006) Microarray-Based Analysis of Subnanogram Quantities of Microbial Community DNAs by Using Whole-Community Genome Amplification. Applied and Environmental Microbiology 72: 4931-4941. (Pubitemid 44078823)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.7
, pp. 4931-4941
-
-
Wu, L.1
Liu, X.2
Schadt, C.W.3
Zhou, J.4
-
37
-
-
84863115440
-
Microbial mediation of carbon-cycle feedbacks to climate warming
-
Zhou J, Xue K, Xie J, Deng Y, Wu L, et al. (2012) Microbial mediation of carbon-cycle feedbacks to climate warming. Nature Clim Change 2: 106-110.
-
(2012)
Nature Clim Change
, vol.2
, pp. 106-110
-
-
Zhou, J.1
Xue, K.2
Xie, J.3
Deng, Y.4
Wu, L.5
-
38
-
-
0033920138
-
Dispensable and indispensable amino acids for humans
-
Reeds PJ (2000) Dispensable and indispensable amino acids for humans. J Nutr 130: 1835S-1840S.
-
(2000)
J Nutr
, vol.130
-
-
Reeds, P.J.1
-
39
-
-
0033949118
-
Contribution of microbial amino acids to amino acid homeostasis of the host
-
Metges CC (2000) Contribution of microbial amino acids to amino acid homeostasis of the host. J Nutr 130: 1857S-1864S.
-
(2000)
J Nutr
, vol.130
-
-
Metges, C.C.1
-
40
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
DOI 10.1126/science.1124234
-
Gill SR, Pop M, DeBoy RT, Eckburg PB, Turnbaugh PJ, et al. (2006) Metagenomic Analysis of the Human Distal Gut Microbiome. Science 312: 1355-1359. (Pubitemid 43839542)
-
(2006)
Science
, vol.312
, Issue.5778
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
DeBoy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
Samuel, B.S.6
Gordon, J.I.7
Relman, D.A.8
Fraser-Liggett, C.M.9
Nelson, K.E.10
-
41
-
-
0025324415
-
Gamma-carboxyglutamate-containing proteins and the vitamin K-dependent carboxylase
-
Vermeer C (1990) Gamma-carboxyglutamate-containing proteins and the vitamin K-dependent carboxylase. Biochem J 266: 625-636.
-
(1990)
Biochem J
, vol.266
, pp. 625-636
-
-
Vermeer, C.1
-
42
-
-
0036399823
-
How host-microbial interactions shape the nutrient environment of the mammalian intestine
-
DOI 10.1146/annurev.nutr.22.011602.092259
-
Hooper LV, Midtvedt T, Gordon JI (2002) How host-microbial interactions shape the nutrient environment of the mammalian intestine. Annu Rev Nutr 22: 283-307. (Pubitemid 35221463)
-
(2002)
Annual Review of Nutrition
, vol.22
, pp. 283-307
-
-
Hooper, L.V.1
Midwedt, T.2
Gordon, J.I.3
-
43
-
-
84862200127
-
Complex Carbohydrate Utilization by the Healthy Human Microbiome
-
Cantarel BL, Lombard V, Henrissat B (2012) Complex Carbohydrate Utilization by the Healthy Human Microbiome. PLoS ONE 7: e28742.
-
(2012)
PLoS ONE
, vol.7
-
-
Cantarel, B.L.1
Lombard, V.2
Henrissat, B.3
-
44
-
-
0033050647
-
Nitrogen, carbon, and sulfur metabolism in natural Thioploca samples
-
Otte S, Kuenen JG, Nielsen LP, Paerl HW, Zopfi J, et al. (1999) Nitrogen, Carbon, and Sulfur Metabolism in NaturalThioploca Samples. Applied and Environmental Microbiology 65: 3148-3157. (Pubitemid 29315593)
-
(1999)
Applied and Environmental Microbiology
, vol.65
, Issue.7
, pp. 3148-3157
-
-
Otte, S.1
Kuenen, J.G.2
Nielsen, L.P.3
Paerl, H.W.4
Zopfi, J.5
Schulz, H.N.6
Teske, A.7
Strotmann, B.8
Gallardo, V.A.9
Jorgensen, B.B.10
-
46
-
-
33748155285
-
Bacterial Glycans: Key Mediators of Diverse Host Immune Responses
-
DOI 10.1016/j.cell.2006.08.021, PII S0092867406010889
-
Comstock LE, Kasper DL (2006) Bacterial Glycans: Key Mediators of Diverse Host Immune Responses. Cell 126: 847-850. (Pubitemid 44310786)
-
(2006)
Cell
, vol.126
, Issue.5
, pp. 847-850
-
-
Comstock, L.E.1
Kasper, D.L.2
-
47
-
-
0037900979
-
Minireview: Lipid metabolism, metabolic diseases, and peroxisome proliferator-activated receptors
-
DOI 10.1210/en.2003-0288
-
Lee C-H, Olson P, Evans RM (2003) Minireview: Lipid Metabolism, Metabolic Diseases, and Peroxisome Proliferator-Activated Receptors. Endocrinology 144: 2201-2207. (Pubitemid 36629867)
-
(2003)
Endocrinology
, vol.144
, Issue.6
, pp. 2201-2207
-
-
Lee, C.-H.1
Olson, P.2
Evans, R.M.3
-
48
-
-
79953733693
-
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
-
Wang Z, Klipfell E, Bennett BJ, Koeth R, Levison BS, et al. (2011) Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease. Nature 472: 57-63.
-
(2011)
Nature
, vol.472
, pp. 57-63
-
-
Wang, Z.1
Klipfell, E.2
Bennett, B.J.3
Koeth, R.4
Levison, B.S.5
-
49
-
-
79960365932
-
Lipid Metabolism by Gut Microbes and Atherosclerosis
-
Loscalzo J (2011) Lipid Metabolism by Gut Microbes and Atherosclerosis. Circulation Research 109: 127-129.
-
(2011)
Circulation Research
, vol.109
, pp. 127-129
-
-
Loscalzo, J.1
-
50
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, et al. (2011) Succession of microbial consortia in the developing infant gut microbiome. Proceedings of the National Academy of Sciences 108: 4578-4585.
-
(2011)
Proceedings of the National Academy of Sciences
, vol.108
, pp. 4578-4585
-
-
Koenig, J.E.1
Spor, A.2
Scalfone, N.3
Fricker, A.D.4
Stombaugh, J.5
-
51
-
-
58149107946
-
Functional genomics of probiotic Lactobacilli
-
Klaenhammer TR, Altermann E, Pfeiler E, Buck BL, Goh YJ, et al. (2008) Functional genomics of probiotic Lactobacilli. J Clin Gastroenterol 42: S160-162.
-
(2008)
J Clin Gastroenterol
, vol.42
-
-
Klaenhammer, T.R.1
Altermann, E.2
Pfeiler, E.3
Buck, B.L.4
Goh, Y.J.5
-
52
-
-
53049107046
-
Terpenoids: Natural inhibitors of NF-kappaB signaling with anti-inflammatory and anticancer potential
-
Salminen A, Lehtonen M, Suuronen T, Kaarniranta K, Huuskonen J (2008) Terpenoids: natural inhibitors of NF-kappaB signaling with anti-inflammatory and anticancer potential. Cell Mol Life Sci 65: 2979-2999.
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 2979-2999
-
-
Salminen, A.1
Lehtonen, M.2
Suuronen, T.3
Kaarniranta, K.4
Huuskonen, J.5
-
53
-
-
76649114015
-
Development of a Common Oligonucleotide Reference Standard for Microarray Data Normalization and Comparison across Different Microbial Communities
-
Liang Y, He Z, Wu L, Deng Y, Li G, et al. (2010) Development of a Common Oligonucleotide Reference Standard for Microarray Data Normalization and Comparison across Different Microbial Communities. Applied and Environmental Microbiology 76: 1088-1094.
-
(2010)
Applied and Environmental Microbiology
, vol.76
, pp. 1088-1094
-
-
Liang, Y.1
He, Z.2
Wu, L.3
Deng, Y.4
Li, G.5
-
54
-
-
34248159046
-
GeoChip: A comprehensive microarray for investigating biogeochemical, ecological and environmental processes
-
DOI 10.1038/ismej.2007.2, PII ISMEJ20072
-
He Z, Gentry TJ, Schadt CW, Wu L, Liebich J, et al. (2007) GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J 1: 67-77. (Pubitemid 46717133)
-
(2007)
ISME Journal
, vol.1
, Issue.1
, pp. 67-77
-
-
He, Z.1
Gentry, T.J.2
Schadt, C.W.3
Wu, L.4
Liebich, J.5
Chong, S.C.6
Huang, Z.7
Wu, W.8
Gu, B.9
Jardine, P.10
Criddle, C.11
Zhou, J.12
-
56
-
-
84884673818
-
The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities
-
Lee Y-J, van Nostrand JD, Tu Q, Lu Z, Cheng L, et al. (2013) The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities. ISME J.
-
(2013)
ISME J
-
-
Lee, Y.-J.1
Van Nostrand, J.D.2
Tu, Q.3
Lu, Z.4
Cheng, L.5
-
57
-
-
84897062959
-
StressChip as a High-Throughput Tool for Assessing Microbial Community Responses to Environmental Stresses
-
Zhou A, He Z, Qin Y, Lu Z, Deng Y, et al. (2013) StressChip as a High-Throughput Tool for Assessing Microbial Community Responses to Environmental Stresses. Environ Sci Technol 13: 13.
-
(2013)
Environ Sci Technol
, vol.13
, pp. 13
-
-
Zhou, A.1
He, Z.2
Qin, Y.3
Lu, Z.4
Deng, Y.5
-
58
-
-
22144441403
-
Empirical establishment of oligonucleotide probe design criteria
-
DOI 10.1128/AEM.71.7.3753-3760.2005
-
He Z, Wu L, Li X, Fields MW, Zhou J (2005) Empirical Establishment of Oligonucleotide Probe Design Criteria. Applied and Environmental Microbiology 71: 3753-3760. (Pubitemid 40980544)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.7
, pp. 3753-3760
-
-
He, Z.1
Wu, L.2
Li, X.3
Fields, M.W.4
Zhou, J.5
-
59
-
-
33144457149
-
Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications
-
DOI 10.1128/AEM.72.2.1688-1691.2006
-
Liebich J, Schadt CW, Chong SC, He Z, Rhee S-K, et al. (2006) Improvement of Oligonucleotide Probe Design Criteria for Functional Gene Microarrays in Environmental Applications. Applied and Environmental Microbiology 72: 1688-1691. (Pubitemid 43271289)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.2
, pp. 1688-1691
-
-
Liebich, J.1
Schadt, C.W.2
Chong, S.C.3
He, Z.4
Rhee, S.-K.5
Zhou, J.6
-
60
-
-
3242773890
-
Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays
-
DOI 10.1128/AEM.70.7.4303-4317.2004
-
Rhee SK, Liu X, Wu L, Chong SC, Wan X, et al. (2004) Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays. Appl Environ Microbiol 70: 4303-4317. (Pubitemid 38969779)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.7
, pp. 4303-4317
-
-
Rhee, S.-K.1
Liu, X.2
Wu, L.3
Chong, S.C.4
Wan, X.5
Zhou, J.6
-
61
-
-
1842579620
-
Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples
-
Tiquia SM, Wu L, Chong SC, Passovets S, Xu D, et al. (2004) Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. Biotechniques 36: 664-670.
-
(2004)
Biotechniques
, vol.36
, pp. 664-670
-
-
Tiquia, S.M.1
Wu, L.2
Chong, S.C.3
Passovets, S.4
Xu, D.5
-
62
-
-
0035656126
-
Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment
-
DOI 10.1128/AEM.67.12.5780-5790.2001
-
Wu L, Thompson DK, Li G, Hurt RA, Tiedje JM, et al. (2001) Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment. Applied and Environmental Microbiology 67: 5780-5790. (Pubitemid 33641017)
-
(2001)
Applied and Environmental Microbiology
, vol.67
, Issue.12
, pp. 5780-5790
-
-
Wu, L.1
Thompson, D.K.2
Li, G.3
Hurt, R.A.4
Tiedje, J.M.5
Zhou, J.6
-
63
-
-
84897058340
-
-
submitted
-
Tu Q, Yu H, He Z, Deng Y, Wu L, et al. (2013) GeoChip 4.0: A High Density Functional Gene Array for Microbial Ecology Studies (submitted).
-
(2013)
GeoChip 4.0: A High Density Functional Gene Array for Microbial Ecology Studies
-
-
Tu, Q.1
Yu, H.2
He, Z.3
Deng, Y.4
Wu, L.5
-
64
-
-
72949091232
-
Bacterial community variation in human body habitats across space and time
-
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, et al. (2009) Bacterial community variation in human body habitats across space and time. Science 326: 1694-1697.
-
(2009)
Science
, vol.326
, pp. 1694-1697
-
-
Costello, E.K.1
Lauber, C.L.2
Hamady, M.3
Fierer, N.4
Gordon, J.I.5
-
65
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Consortium THMP
-
Consortium THMP (2012) Structure, function and diversity of the healthy human microbiome. Nature 486: 207-214.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
66
-
-
65649126006
-
Community as the unit of pathogenicity: An emerging concept as to the microbial pathogenesis of apical periodontitis
-
Siqueira Jr JF, Rôças IN (2009) Community as the unit of pathogenicity: An emerging concept as to the microbial pathogenesis of apical periodontitis. Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontology 107: 870-878.
-
(2009)
Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontology
, vol.107
, pp. 870-878
-
-
Siqueira Jr., J.F.1
Rôças, I.N.2
-
67
-
-
77953616099
-
Periodontitis: A polymicrobial disruption of host homeostasis
-
Darveau RP (2010) Periodontitis: a polymicrobial disruption of host homeostasis. Nat Rev Micro 8: 481-490.
-
(2010)
Nat Rev Micro
, vol.8
, pp. 481-490
-
-
Darveau, R.P.1
-
68
-
-
0035377591
-
The intra-oral translocation of periodontopathogens jeopardises the outcome of periodontal therapy: A review of the literature
-
Quirynen M, De Soete M, Dierickx K, van Steenberghe D (2001) The intra-oral translocation of periodontopathogens jeopardises the outcome of periodontal therapy. A review of the literature. J Clin Periodontol 28: 499-507. (Pubitemid 33761324)
-
(2001)
Journal of Clinical Periodontology
, vol.28
, Issue.6
, pp. 499-507
-
-
Quirynen, M.1
De Soete, M.2
Dierickx, K.3
Van Steenberghe, D.4
-
69
-
-
20644434164
-
Etiology and pathogenesis of periodontal diseases
-
DOI 10.1016/j.cden.2005.03.001, PII S0011853205000170
-
Tatakis DN, Kumar PS (2005) Etiology and pathogenesis of periodontal diseases. Dental clinics of North America 49: 491-516, v. (Pubitemid 40835770)
-
(2005)
Dental Clinics of North America
, vol.49
, Issue.3 SPEC. ISS.
, pp. 491-516
-
-
Tatakis, D.N.1
Kumar, P.S.2
-
70
-
-
84867629471
-
Butyric acid induces apoptosis in both human monocytes and lymphocytes equivalently
-
Abe K (2012) Butyric acid induces apoptosis in both human monocytes and lymphocytes equivalently. Journal of Oral Science 54: 7-14.
-
(2012)
Journal of Oral Science
, vol.54
, pp. 7-14
-
-
Abe, K.1
-
72
-
-
0035430933
-
Short-Chain Carboxylic Acids Produced by Gram-Negative Anaerobic Bacteria Can Accelerate or Delay Polymorphonuclear Leukocyte Apoptosis in Vitro
-
DOI 10.1902/jop.2001.72.8.1059
-
Stehle HW, Leblebicioglu B, Walters JD (2001) Short-Chain Carboxylic Acids Produced by Gram-Negative Anaerobic Bacteria Can Accelerate or Delay Polymorphonuclear Leukocyte Apoptosis in Vitro. Journal of Periodontology 72: 1059-1063. (Pubitemid 33664638)
-
(2001)
Journal of Periodontology
, vol.72
, Issue.8
, pp. 1059-1063
-
-
Stehle, H.W.1
Leblebicioglu, B.2
Walters, J.D.3
-
73
-
-
77955937596
-
Butyrate, a bacterial metabolite, induces apoptosis and autophagic cell death in gingival epithelial cells
-
Tsuda H, Ochiai K, Suzuki N, Otsuka K (2010) Butyrate, a bacterial metabolite, induces apoptosis and autophagic cell death in gingival epithelial cells. Journal of Periodontal Research 45: 626-634.
-
(2010)
Journal of Periodontal Research
, vol.45
, pp. 626-634
-
-
Tsuda, H.1
Ochiai, K.2
Suzuki, N.3
Otsuka, K.4
-
74
-
-
84867230132
-
Longitudinal study of volatile fatty acids in the gingival crevicular fluid of patients with periodontitis before and after nonsurgical therapy
-
no-no
-
Qiqiang L, Huanxin M, Xuejun G (2012) Longitudinal study of volatile fatty acids in the gingival crevicular fluid of patients with periodontitis before and after nonsurgical therapy. Journal of Periodontal Research: no-no.
-
(2012)
Journal of Periodontal Research
-
-
Qiqiang, L.1
Huanxin, M.2
Xuejun, G.3
-
75
-
-
79952469037
-
Analysis of short chain fatty acids in gingival crevicular fluid of patients with aggressive periodontitis
-
Lu RF, Meng HX, Gao XJ, Feng L, Xu L (2008) Analysis of short chain fatty acids in gingival crevicular fluid of patients with aggressive periodontitis. Zhonghua Kou Qiang Yi Xue Za Zhi 43: 664-667.
-
(2008)
Zhonghua Kou Qiang Yi Xue Za Zhi
, vol.43
, pp. 664-667
-
-
Lu, R.F.1
Meng, H.X.2
Gao, X.J.3
Feng, L.4
Xu, L.5
-
76
-
-
80052028523
-
The real cost of sequencing: Higher than you think
-
Sboner A, Mu XJ, Greenbaum D, Auerbach RK, Gerstein MB (2011) The real cost of sequencing: higher than you think. Genome Biol 12: 125.
-
(2011)
Genome Biol
, vol.12
, pp. 125
-
-
Sboner, A.1
Mu, X.J.2
Greenbaum, D.3
Auerbach, R.K.4
Gerstein, M.B.5
-
77
-
-
84856496549
-
Next generation sequencing and bioinformatic bottlenecks: The current state of metagenomic data analysis
-
Scholz MB, Lo C-C, Chain PSG (2012) Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis. Current Opinion in Biotechnology 23: 9-15.
-
(2012)
Current Opinion in Biotechnology
, vol.23
, pp. 9-15
-
-
Scholz, M.B.1
Lo, C.-C.2
Chain, P.S.G.3
-
78
-
-
84881012289
-
Strain/Species-specific probe design for microbial identification microarrays
-
Tu Q, He Z, Deng Y, Zhou J (2013) Strain/Species-specific probe design for microbial identification microarrays. Appl Environ Microbiol 79: 5085-5088.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 5085-5088
-
-
Tu, Q.1
He, Z.2
Deng, Y.3
Zhou, J.4
|