Lateral diffusion in a discrete fluid membrane with immobile particles

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 89, Issue 2, 2014, Pages

  Kalay, Ziya ^a   Fujiwara, Takahiro K ^a   Otaka, Akihisa ^a,b   Kusumi, Akihiro ^a,c  

^a KYOTO UNIVERSITY   (Japan)

^b KYOTO UNIVERSITY   (Japan)

^c KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELL MEMBRANES; CYTOLOGY; DIFFUSION; DIFFUSION IN LIQUIDS; FENCES; MEMBRANES; MOLECULAR DYNAMICS; MOLECULES; PROTEINS;

CORRELATED DISTRIBUTIONS; CYTOSKELETAL STRUCTURES; EXPONENTIAL DISTRIBUTIONS; ISOTROPIC LIQUID STATE; MOLECULAR DYNAMICS SIMULATIONS; PARTICLE-BASED SIMULATION; SINGLE-MOLECULE OBSERVATION; TWO DIMENSIONAL (2 D);

TRANSPORT PROPERTIES;

BIOPOLYMER; LIPID BILAYER; SOLUTION AND SOLUBILITY;

BIOLOGICAL MODEL; CELL MEMBRANE; CELL MEMBRANE PERMEABILITY; CHEMICAL MODEL; CHEMISTRY; COMPUTER SIMULATION; DIFFUSION; LIPID BILAYER; MEMBRANE FLUIDITY; MICROFLUIDICS; PROCEDURES; SOLUTION AND SOLUBILITY;

BIOPOLYMERS; CELL MEMBRANE; CELL MEMBRANE PERMEABILITY; COMPUTER SIMULATION; DIFFUSION; LIPID BILAYERS; MEMBRANE FLUIDITY; MICROFLUIDICS; MODELS, BIOLOGICAL; MODELS, CHEMICAL; SOLUTIONS;

EID: 84896917725     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.89.022724     Document Type: Article

References (47)

1. S. J. Singer and G. L. Nicolson, Science 175, 720 (1972). SCIEAS 0036-8075 10.1126/science.175.4023.720
2. A. Kusumi, C. Nakada, K. Ritchie, K. Murase, K. Suzuki, H. Murakoshi, R. S. Kasai, J. Kondo, and T. Fujiwara, Annu. Rev. Biophys. Biomol. Struct. 34, 351 (2005). ABBSE4 1056-8700 10.1146/annurev.biophys.34.040204.144637 (Pubitemid 40847729)
3. N. Morone, T. Fujiwara, K. Murase, R. S. Kasai, H. Ike, S. Yuasa, J. Usukura, and A. Kusumi, J. Cell Biol. 174, 851 (2006). JCLBA3 0021-9525 10.1083/jcb.200606007 (Pubitemid 44373734)
4. J. G. Powles, M. J. D. Mallett, G. Rickayzen, and W. A. B. Evans, Proc. R. Soc. Lond. A 436, 391 (1992). 1364-5021 10.1098/rspa.1992.0025
5. O. K. Dudko, A. M. Berezhkovskii, and G. H. Weiss, J. Chem. Phys. 121, 11283 (2004). JCPSA6 0021-9606 10.1063/1.1814055 (Pubitemid 40020665)
6. V. M. Kenkre, L. Giuggioli, and Z. Kalay, Phys. Rev. E 77, 051907 (2008). PLEEE8 1539-3755 10.1103/PhysRevE.77.051907 (Pubitemid 351705638)
7. Z. Kalay, P. E. Parris, and V. M. Kenkre, J. Phys.: Condens. Matter 20, 245105 (2008). JCOMEL 0953-8984 10.1088/0953-8984/20/24/245105 (Pubitemid 351777686)
8. A. Kusumi, T. K. Fujiwara, R. Chadda, M. Xie, T. A. Tsunoyama, Z. Kalay, R. S. Kasai, and K. G. Suzuki, Annu. Rev. Cell Dev. Biol. 28, 215 (2012). ARDBF8 1081-0706 10.1146/annurev-cellbio-100809-151736
9. K. Murase, T. Fujiwara, Y. Umemura, K. Suzuki, R. Iino, H. Yamashita, M. Saito, H. Murakoshi, K. Ritchie, and A. Kusumi, Biophys. J. 86, 4075 (2004). BIOJAU 0006-3495 10.1529/biophysj.103.035717 (Pubitemid 38780282)
10. T. Fujiwara, K. Ritchie, H. Murakoshi, K. Jacobson, and A. Kusumi, J. Cell Biol. 157, 1071 (2002). JCLBA3 0021-9525 10.1083/jcb.200202050 (Pubitemid 34839781)
11. M. M. Sperotto and O. G. Mouritsen, Biophys. J. 59, 261 (1991). BIOJAU 0006-3495 10.1016/S0006-3495(91)82219-6
12. P. F. F. Almeida, W. L. C. Vaz, and T. E. Thompson, Biochemistry 31, 7198 (1992). 0006-2960 10.1021/bi00146a024
13. D. Holcman, N. Hoze, and Z. Schuss, Phys. Rev. E 84, 021906 (2011); PLEEE8 1539-3755 10.1103/PhysRevE.84.021906 13b D. Holcman, N. Hoze, and Z. Schuss, Phys. Rev. E 85, 039903 (E) (2012). PLEEE8 1539-3755 10.1103/PhysRevE.85.039903
14. M. J. Saxton, Biophys. J. 64, 1766 (1993). BIOJAU 0006-3495 10.1016/S0006-3495(93)81548-0
15. M. J. Saxton, Biophys. J. 58, 1303 (1990). BIOJAU 0006-3495 10.1016/S0006-3495(90)82470-X
16. D. V. Nicolau, Jr., J. F. Hancock, and K. Burrage, Biophys. J. 92, 1975 (2007). BIOJAU 0006-3495 10.1529/biophysj.105.076869 (Pubitemid 46495261)
17. P. G. Saffman and M. Delbrück, Proc. Natl. Acad. Sci. USA 72, 3111 (1975). PNASA6 0027-8424 10.1073/pnas.72.8.3111
18. S. J. Bussell, D. L. Koch, and D. A. Hammer, Biophys. J. 68, 1836 (1995). BIOJAU 0006-3495 10.1016/S0006-3495(95)80360-7
19. K. Seki and S. Komura, Phys. Rev. E 47, 2377 (1993). 1063-651X 10.1103/PhysRevE.47.2377
20. N. Oppenheimer and H. Diamant, Phys. Rev. Lett. 107, 258102 (2011). PRLTAO 0031-9007 10.1103/PhysRevLett.107.258102
21. P. S. Niemelä, M. S. Miettinen, L. Monticelli, H. Hammaren, P. Bjelkmar, T. Murtola, E. Lindahl, and I. Vattulainen, J. Am. Chem. Soc. 132, 7574 (2010). JACSAT 0002-7863 10.1021/ja101481b
22. A. Naji, A. J. Levine, and P. Pincus, Biophys. J. 93, L49 (2007). BIOJAU 0006-3495 10.1529/biophysj.107.119222 (Pubitemid 350223787)
23. F. Höfling and T. Franosch, Rep. Prog. Phys. 76, 046602 (2013). RPPHAG 0034-4885 10.1088/0034-4885/76/4/046602
24. A. Mulero, Theory and Simulation of Hard-Sphere Fluids and Related Systems (Springer, Berlin, 2008).
25. D. C. Rapaport, The Art of Molecular Dynamics Simulation, 2nd ed. (Cambridge University Press, Cambridge, UK, 2004).
26. M. Skoge, A. Donev, F. H. Stillinger, and S. Torquato, Phys. Rev. E 74, 041127 (2006). PLEEE8 1539-3755 10.1103/PhysRevE.74.041127 (Pubitemid 44672760)
27. X. Xu and S. A. Rice, Phys. Rev. E 83, 021120 (2011). PLEEE8 1539-3755 10.1103/PhysRevE.83.021120
28. C. H. Mak, Phys. Rev. E 73, 065104 (2006). PLEEE8 1539-3755 10.1103/PhysRevE.73.065104 (Pubitemid 43855991)
29. K. Froböse, F. Kolbe, and J. Jäckle, J. Phys.: Condens. Matter 12, 6563 (2000). JCOMEL 0953-8984 10.1088/0953-8984/12/29/328
30. J. Jäckle and H. Kawai, Physica A 291, 184 (2001). PHYADX 0378-4371 10.1016/S0378-4371(00)00481-7 (Pubitemid 32263058)
31. I.-C. Yeh and G. Hummer, J. Phys. Chem. B 108, 15873 (2004). JPCBFK 1520-6106 10.1021/jp0477147
32. B. J. Alder and T. E. Wainwright, Phys. Rev. A 1, 18 (1970). 0556-2791 10.1103/PhysRevA.1.18
33. M. H. Ernst, E. H. Hauge, and J. M. J. van Leeuwen, Phys. Rev. A 4, 2055 (1971). 0556-2791 10.1103/PhysRevA.4.2055
34. J. J. Erpenbeck and W. W. Wood, Phys. Rev. A 26, 1648 (1982). 0556-2791 10.1103/PhysRevA.26.1648
35. S. Redner, A Guide to First-Passage Processes (Cambridge University Press, Cambridge, UK, 2001).
36. E. W. Montroll and G. H. Weiss, J. Math. Phys. 6, 167 (1965). JMAPAQ 0022-2488 10.1063/1.1704269
37. P. Hänggi, P. Talkner, and M. Borkovec, Rev. Mod. Phys. 62, 251 (1990). RMPHAT 0034-6861 10.1103/RevModPhys.62.251
38. F. L. Román, J. A. White, A. González, and in Lecture Notes in Physics, Vol. 753 (Springer-Verlag, Berlin, 2008), Chap. 8, pp. 343-381.
39. D. Axelrod, P. Ravdin, D. E. Koppel, J. Schlessinger, W. W. Webb, E. L. Elson, and T. R. Podleski, Proc. Natl. Acad. Sci. USA 73, 4594 (1976). PNASA6 0027-8424 10.1073/pnas.73.12.4594 (Pubitemid 8013946)
40. D. E. Golan, C. S. Brown, C. M. Cianci, S. T. Furlong, and J. P. Caulfield, J. Cell Biol. 103, 819 (1986). JCLBA3 0021-9525 10.1083/jcb.103.3.819 (Pubitemid 17177331)
41. K. Ahlén, P. Ring, B. Tomasini-Johansson, K. Holmqvist, K.-E. Magnusson, and K. Rubin, Biochem. Biophys. Res. Commun. 314, 89 (2004). BBRCA9 0006-291X 10.1016/j.bbrc.2003.12.057 (Pubitemid 38058373)
42. M. J. Saxton, Biophys. J. 99, 1490 (2010). BIOJAU 0006-3495 10.1016/j.bpj.2010.06.033
43. F. Caudron and Y. Barral, Dev. Cell 16, 493 (2009). 1534-5807 10.1016/j.devcel.2009.04.003
44. F. R. Garcia-Gonzalo and J. F. Reiter, J. Cell Biol. 197, 697 (2012). JCLBA3 0021-9525 10.1083/jcb.201111146
45. H. Wolfenson, I. Lavelin, and B. Geiger, Dev. Cell 24, 447 (2013). 1534-5807 10.1016/j.devcel.2013.02.012
46. D. Toomre and J. Bewersdorf, Annu. Rev. Cell Dev. Biol. 26, 285 (2010). ARDBF8 1081-0706 10.1146/annurev-cellbio-100109-104048
47. M. Maglione and S. J. Sigrist, Nat. Neurosci. 16, 790 (2013). NANEFN 1097-6256 10.1038/nn.3403