Hungatella effluvii gen. nov., sp. nov., an obligately anaerobic bacterium isolated from an effluent treatment plant, and reclassification of Clostridium hathewayi as Hungatella hathewayi gen. nov., comb. nov

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 3, 2014, Pages 710-718

  Kaur, Sukhpreet ^a   Yawar, Mir ^a   Kumar, P Anil ^a   Suresh, K ^a  

^a INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ESCULIN; GLUCOSE; RNA 16S; STARCH; UNSATURATED FATTY ACID; UREA;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL STRAIN; CLOSTRIDIUM HATHEWAYI; COMPARATIVE STUDY; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; EFFLUENT; ENZYME ACTIVITY; FERMENTATION; GENE CLUSTER; GENE SEQUENCE; GENETIC DIFFERENCE; GENUS; HUNGATELLA EFFLUVII; HYDROLYSIS; LIPID COMPOSITION; NEW GENUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHASE CONTRAST MICROSCOPY; PHYLOGENY; PRIORITY JOURNAL; SALT TOLERANCE; SEQUENCE ALIGNMENT; SEWAGE TREATMENT PLANT; TYPE STRAIN;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BIOREACTORS; DNA, BACTERIAL; FATTY ACIDS; FERMENTATION; GRAM-POSITIVE ENDOSPORE-FORMING RODS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROBIOTICS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 84896827537     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.056986-0     Document Type: Article

References (40)

1. Alam, S. I., Dixit, A., Reddy, G. S., Dube, S., Palit, M., Shivaji, S. & Singh, L. (2006). Clostridium schirmacherense sp. nov., an obligately anaerobic, proteolytic, psychrophilic bacterium isolated from lake sediment of Schirmacher Oasis, Antarctica. Int J Syst Evol Microbiol 56, 715-720.
2. Collins, M. D., Lawson, P. A., Willems, A., Cordoba, J. J., Fernandez-Garayzabal, J., Garcia, P., Cai, J., Hippe, H. & Farrow, J. A. E. (1994). The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44, 812-826.
3. Cook, A. R., Riley, P. W., Murdoch, H., Evans, P. N. & McDonald, I. R. (2007). Howardella ureilytica gen. nov., sp. nov., a Gram-positive, coccoid-shaped bacterium from a sheep rumen. Int J Syst Evol Microbiol 57, 2940-2945.
4. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
5. Domingo, M. C., Huletsky, A., Boissinot, M., Hélie, M. C., Bernal, A., Bernard, K. A., Grayson, M. L., Picard, F. J. & Bergeron, M. G. (2009). Clostridium lavalense sp. nov., a glycopeptide-resistant species isolated from human faeces. Int J Syst Evol Microbiol 59, 498-503.
6. Ezaki, T. (2009). Genus VII Coprococcus. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 3, pp. 940-941. Edited by P. De Vos, G. M. Garrity, D. Jones, N. R. Krieg, W. Ludwig, F. A. Rainey, K.-H. Schleifer & W. B. Whitman. New York: Springer.
7. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
8. Greening, R. C. & Leedle, J. A. Z. (1989). Enrichment and isolation of Acetitomaculum ruminis, gen. nov., sp. nov.: acetogenic bacteria from the bovine rumen. Arch Microbiol 151, 399-406.
9. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
10. Holdeman, L. V. & Moore, W. E. C. (1974). New genus, Coprococcus, twelve new species, and emended descriptions of four previously described species of bacteria from human feces. Int J Syst Bacteriol 24, 260-277.
11. Hughes, J. B., Wang, Y. C. & Zhang, C. (1999). Anaerobic biotransformation of 2,4-dinitrotoulene and 2,6-dinitrotoulene by Clostridium acetobutylicum: a pathway through dihydroxylamino intermediates. Environ Sci Technol 33, 1065-1070.
12. Johnston, N. C., Goldfine, H. & Fischer, W. (1994). Novel polar lipid composition of Clostridium innocuum as the basis for an assessment of its taxonomic status. Microbiology 140, 105-111.
13. Johnston, N. C., Baker, J. K. & Goldfine, H. (2004). Phospholipids of Clostridium perfringens: a reexamination. FEMS Microbiol Lett 233, 65-68.
14. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
15. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
16. Lányi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
17. Lewis, T. A., Goszczynski, S., Crawford, R. L., Korus, R. A. & Admassu, W. (1996). Products of anaerobic 2,4,6-trinitrotoluene (TNT) transformation by Clostridium bifermentans. Appl Environ Microbiol 62, 4669-4674.
18. Liu, C., Finegold, S. M., Song, Y. & Lawson, P. A. (2008). Reclassification of Clostridium coccoides, Ruminococcus hansenii, Ruminococcus hydrogenotrophicus, Ruminococcus luti, Ruminococcus productus and Ruminococcus schinkii as Blautia coccoides gen. nov., comb. nov., Blautia hansenii comb. nov., Blautia hydrogenotrophica comb. nov., Blautia luti comb. nov., Blautia producta comb. nov., Blautia schinkii comb. nov. and description of Blautia wexlerae sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 58, 1896-1902.
19. Ludwig, W., Schleifer, K.-H. & Whitman, W. B. (2009). Family Eubacteriaceae. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 3, pp. 865-891. Edited by P. De Vos, G. M. Garrity, D. Jones, N. R. Krieg, W. Ludwig, F. A. Rainey, K.-H. Schleifer &W. B. Whitman. New York: Springer.
20. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbancetemperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
21. Mohan, R., Namsolleck, P., Lawson, P. A., Osterhoff, M., Collins, M. D., Alpert, C. A. & Blaut, M. (2006). Clostridium asparagiforme sp. nov., isolated from a human faecal sample. Syst Appl Microbiol 29, 292-299.
22. Moore, L. V. & Moore, W. E. C. (1994). Oribaculum catoniae gen. nov., sp. nov.; Catonella morbi gen. nov., sp. nov.; Hallella seregens gen. nov., sp. nov.; Johnsonella ignava gen. nov., sp. nov.; and Dialister pneumosintes gen. nov., comb. nov., nom. rev., anaerobic gramnegative bacilli from the human gingival crevice. Int J Syst Bacteriol 44, 187-192.
23. Prakash, O., Kumari, K. & Lal, R. (2007). Pseudomonas delhiensis sp. nov., from a fly ash dumping site of a thermal power plant. Int J Syst Evol Microbiol 57, 527-531.
24. Rainey, F. A., Hollen, B. J. & Small, A. (2009). Genus Clostridium. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 3, pp. 738-828. Edited by P. De Vos, G. M. Garrity, D. Jones, N. R. Krieg, W. Ludwig, F. A. Rainey, K.-H. Schleifer & W. B. Whitman. New York: Springer.
25. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
26. Schumann, P. (2011). Peptidoglycan structure. Methods Microbiol 38, 101-129.
27. Sijpesteijn, A. K. (1948). Cellulose-decomposing bacteria from the rumen of cattle. Thesis, University of Leiden, The Netherlands.
28. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
29. Spring, S., Merkhoffer, B., Weiss, N., Kroppenstedt, R. M., Hippe, H. & Stackebrandt, E. (2003). Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov. Int J Syst Evol Microbiol 53, 1019-1029.
30. Stanton, T. B. & Savage, D. C. (1983). Roseburia cecicola gen. nov., sp. nov., a motile, obligately anaerobic bacterium from a mouse cecum. Int J Syst Bacteriol 33, 618-627.
31. Steer, T., Collins, M. D., Gibson, G. R., Hippe, H. & Lawson, P. A. (2001). Clostridium hathewayi sp. nov., from human faeces. Syst Appl Microbiol 24, 353-357.
32. Suresh, K., Mayilraj, S. & Chakrabarti, T. (2006). Effluviibacter roseus gen. nov., sp. nov., isolated from muddy water, belonging to the family 'Flexibacteraceae'. Int J Syst Evol Microbiol 56, 1703-1707.
33. Suresh, K., Prakash, D., Rastogi, N. & Jain, R. K. (2007). Clostridium nitrophenolicum sp. nov., a novel anaerobic p-nitrophenol-degrading bacterium, isolated from a subsurface soil sample. Int J Syst Evol Microbiol 57, 1886-1890.
34. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
35. Taras, D., Simmering, R., Collins, M. D., Lawson, P. A. & Blaut, M. (2002). Reclassification of Eubacterium formicigenerans Holdeman and Moore 1974 as Dorea formicigenerans gen. nov., comb. nov., and description of Dorea longicatena sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 52, 423-428.
36. Tourova, T. P. & Antonov, A. S. (1987). Identification of microorganisms by rapid DNA-DNA hybridization. Method Microbiol 19, 333-355.
37. Varel, V. H., Tanner, R. S. & Woese, C. R. (1995). Clostridium herbivorans sp. nov., a cellulolytic anaerobe from the pig intestine. Int J Syst Bacteriol 45, 490-494.
38. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
39. Wiegel, J., Tanner, R. & Rainey, F. A. (2006). An introduction to the family Clostridiaceae. In The Prokaryotes, 3rd edn, vol. 4, pp. 654-678. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
40. Yutin, N. & Galperin, M. Y. (2013). A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia. Environ Microbiol 15, 2631-2641.