-
1
-
-
77951889295
-
The mammalian circadian timing system: Organization and coordination of central and peripheral clocks
-
Dibner, C., Schibler, U. & Albrecht, U. The mammalian circadian timing system: organization and coordination of central and peripheral clocks. Annu. Rev. Physiol. 72, 517-549 (2010).
-
(2010)
Annu. Rev. Physiol.
, vol.72
, pp. 517-549
-
-
Dibner, C.1
Schibler, U.2
Albrecht, U.3
-
2
-
-
26444507854
-
The period length of fibroblast circadian gene expression varies widely among human individuals
-
Brown, S.A. et al. The period length of fibroblast circadian gene expression varies widely among human individuals. PLoS Biol. 3, e338 (2005).
-
(2005)
PLoS Biol.
, vol.3
-
-
Brown, S.A.1
-
3
-
-
40349087042
-
Molecular insights into human daily behavior
-
DOI 10.1073/pnas.0707772105
-
Brown, S.A. et al. Molecular insights into human daily behavior. Proc. Natl. Acad. Sci. USA 105, 1602-1607 (2008). (Pubitemid 351346561)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.5
, pp. 1602-1607
-
-
Brown, S.A.1
Kunz, D.2
Dumas, A.3
Westermark, P.O.4
Vanselow, K.5
Tilmann-Wahnschaffe, A.6
Herzel, H.7
Kramer, A.8
-
4
-
-
77950602416
-
Diurnal preference and sleep quality: Same genes? A study of young adult twins
-
Barclay, N.L., Eley, T.C., Buysse, D.J., Archer, S.N. & Gregory, A.M. Diurnal preference and sleep quality: same genes? A study of young adult twins. Chronobiol. Int. 27, 278-296 (2010).
-
(2010)
Chronobiol. Int.
, vol.27
, pp. 278-296
-
-
Barclay, N.L.1
Eley, T.C.2
Buysse, D.J.3
Archer, S.N.4
Gregory, A.M.5
-
5
-
-
33847079148
-
Stability of genetic influence on morningness-eveningness: A cross-sectional examination of South Korean twins from preadolescence to young adulthood
-
Hur, Y.M. Stability of genetic influence on morningness-eveningness: a cross-sectional examination of South Korean twins from preadolescence to young adulthood. J. Sleep Res. 16, 17-23 (2007).
-
(2007)
J. Sleep Res.
, vol.16
, pp. 17-23
-
-
Hur, Y.M.1
-
6
-
-
34249805389
-
Heritability of diurnal type: A nationwide study of 8753 adult twin pairs
-
DOI 10.1111/j.1365-2869.2007.00580.x
-
Koskenvuo, M., Hublin, C., Partinen, M., Heikkila, K. & Kaprio, J. Heritability of diurnal type: a nationwide study of 8753 adult twin pairs. J. Sleep Res. 16, 156-162 (2007). (Pubitemid 46850084)
-
(2007)
Journal of Sleep Research
, vol.16
, Issue.2
, pp. 156-162
-
-
Koskenvuo, M.1
Hublin, C.2
Partinen, M.3
Heikkila, K.4
Kaprio, J.5
-
7
-
-
0017136215
-
A functional analysis of circadian pacemakers in nocturnal rodents
-
Pittendrigh, C.S. & Daan, S. A functional analysis of circadian pacemakers in nocturnal rodents. J. Comp. Physiol. 106, 223-252 (1976).
-
(1976)
J. Comp. Physiol.
, vol.106
, pp. 223-252
-
-
Pittendrigh, C.S.1
Daan, S.2
-
8
-
-
79951991161
-
The human circadian system adapts to prior photic history
-
Chang, A.M., Scheer, F.A. & Czeisler, C.A. The human circadian system adapts to prior photic history. J. Physiol. (Lond.) 589, 1095-1102 (2011).
-
(2011)
J. Physiol. (Lond.)
, vol.589
, pp. 1095-1102
-
-
Chang, A.M.1
Scheer, F.A.2
Czeisler, C.A.3
-
9
-
-
84869863877
-
Aberrant light directly impairs mood and learning through melanopsin-expressing neurons
-
LeGates, T.A. et al. Aberrant light directly impairs mood and learning through melanopsin-expressing neurons. Nature 491, 594-598 (2012).
-
(2012)
Nature
, vol.491
, pp. 594-598
-
-
Legates, T.A.1
-
10
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
DOI 10.1101/gad.947102
-
Bird, A. DNA methylation patterns and epigenetic memory. Genes Dev. 16, 6-21 (2002). (Pubitemid 34049633)
-
(2002)
Genes and Development
, vol.16
, Issue.1
, pp. 6-21
-
-
Bird, A.1
-
11
-
-
80053270332
-
Neuronal activity modifies the DNA methylation landscape in the adult brain
-
Guo, J.U. et al. Neuronal activity modifies the DNA methylation landscape in the adult brain. Nat. Neurosci. 14, 1345-1351 (2011).
-
(2011)
Nat. Neurosci.
, vol.14
, pp. 1345-1351
-
-
Guo, J.U.1
-
12
-
-
70549104872
-
Dynamic DNA methylation programs persistent adverse effects of early-life stress
-
Murgatroyd, C. et al. Dynamic DNA methylation programs persistent adverse effects of early-life stress. Nat. Neurosci. 12, 1559-1566 (2009).
-
(2009)
Nat. Neurosci.
, vol.12
, pp. 1559-1566
-
-
Murgatroyd, C.1
-
13
-
-
77958580776
-
DNA methylation and memory formation
-
Day, J.J. & Sweatt, J.D. DNA methylation and memory formation. Nat. Neurosci. 13, 1319-1323 (2010).
-
(2010)
Nat. Neurosci.
, vol.13
, pp. 1319-1323
-
-
Day, J.J.1
Sweatt, J.D.2
-
14
-
-
64349091471
-
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
-
Ball, M.P. et al. Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat. Biotechnol. 27, 361-368 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 361-368
-
-
Ball, M.P.1
-
15
-
-
49349102752
-
Circadian entrainment aftereffects in suprachiasmatic nuclei and peripheral tissues in vitro
-
Molyneux, P.C., Dahlgren, M.K. & Harrington, M.E. Circadian entrainment aftereffects in suprachiasmatic nuclei and peripheral tissues in vitro. Brain Res. 1228, 127-134 (2008).
-
(2008)
Brain Res.
, vol.1228
, pp. 127-134
-
-
Molyneux, P.C.1
Dahlgren, M.K.2
Harrington, M.E.3
-
16
-
-
84885347889
-
Reversible DNA methylation regulates seasonal photoperiodic time measurement
-
Stevenson, T.J. & Prendergast, B.J. Reversible DNA methylation regulates seasonal photoperiodic time measurement. Proc. Natl. Acad. Sci. USA 110, 16651-16656 (2013).
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 16651-16656
-
-
Stevenson, T.J.1
Prendergast, B.J.2
-
17
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, D.W., Sherman, B.T. & Lempicki, R.A. Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nat. Protoc. 4, 44-57 (2009).
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
18
-
-
84871445347
-
The circadian clock: A framework linking metabolism, epigenetics and neuronal function
-
Masri, S. & Sassone-Corsi, P. The circadian clock: a framework linking metabolism, epigenetics and neuronal function. Nat. Rev. Neurosci. 14, 69-75 (2013).
-
(2013)
Nat. Rev. Neurosci.
, vol.14
, pp. 69-75
-
-
Masri, S.1
Sassone-Corsi, P.2
-
19
-
-
84870152439
-
5-Methylcytosine DNA demethylation: More than losing a methyl group
-
Franchini, D.M., Schmitz, K.M. & Petersen-Mahrt, S.K. 5-Methylcytosine DNA demethylation: more than losing a methyl group. Annu. Rev. Genet. 46, 419-441 (2012).
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 419-441
-
-
Franchini, D.M.1
Schmitz, K.M.2
Petersen-Mahrt, S.K.3
-
20
-
-
77952886110
-
Cortical DNA methylation maintains remote memory
-
Miller, C.A. et al. Cortical DNA methylation maintains remote memory. Nat. Neurosci. 13, 664-666 (2010).
-
(2010)
Nat. Neurosci.
, vol.13
, pp. 664-666
-
-
Miller, C.A.1
-
21
-
-
84870553909
-
Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome
-
Vollmers, C. et al. Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome. Cell Metab. 16, 833-845 (2012).
-
(2012)
Cell Metab.
, vol.16
, pp. 833-845
-
-
Vollmers, C.1
-
22
-
-
33847614418
-
Covalent modification of dna regulates memory formation
-
DOI 10.1016/j.neuron.2007.02.022, PII S0896627307001420
-
Miller, C.A. & Sweatt, J.D. Covalent modification of DNA regulates memory formation. Neuron 53, 857-869 (2007). (Pubitemid 46367557)
-
(2007)
Neuron
, vol.53
, Issue.6
, pp. 857-869
-
-
Miller, C.A.1
Sweatt, J.D.2
-
23
-
-
77957878987
-
Mechanistic insights on the inhibition of c5 DNA methyltransferases by zebularine
-
Champion, C. et al. Mechanistic insights on the inhibition of c5 DNA methyltransferases by zebularine. PLoS ONE 5, e12388 (2010).
-
(2010)
PLoS ONE
, vol.5
-
-
Champion, C.1
-
24
-
-
79960953992
-
CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency
-
Belden, W.J., Lewis, Z.A., Selker, E.U., Loros, J.J. & Dunlap, J.C. CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency. PLoS Genet. 7, e1002166 (2011).
-
(2011)
PLoS Genet.
, vol.7
-
-
Belden, W.J.1
Lewis, Z.A.2
Selker, E.U.3
Loros, J.J.4
Dunlap, J.C.5
-
25
-
-
78650676643
-
Perinatal photoperiod imprints the circadian clock
-
Ciarleglio, C.M., Axley, J.C., Strauss, B.R., Gamble, K.L. & McMahon, D.G. Perinatal photoperiod imprints the circadian clock. Nat. Neurosci. 14, 25-27 (2011).
-
(2011)
Nat. Neurosci.
, vol.14
, pp. 25-27
-
-
Ciarleglio, C.M.1
Axley, J.C.2
Strauss, B.R.3
Gamble, K.L.4
McMahon, D.G.5
-
26
-
-
84884194695
-
Tissue-specific modification of clock methylation in aging mice
-
Zhang, L. et al. Tissue-specific modification of clock methylation in aging mice. Eur. Rev. Med. Pharmacol. Sci. 17, 1874-1880 (2013).
-
(2013)
Eur. Rev. Med. Pharmacol. Sci.
, vol.17
, pp. 1874-1880
-
-
Zhang, L.1
-
27
-
-
84880043634
-
Aberrant DNA methylation of miR-219 promoter in long-term night shiftworkers
-
Shi, F. et al. Aberrant DNA methylation of miR-219 promoter in long-term night shiftworkers. Environ. Mol. Mutagen. 54, 406-413 (2013).
-
(2013)
Environ. Mol. Mutagen.
, vol.54
, pp. 406-413
-
-
Shi, F.1
-
28
-
-
81255140203
-
Epigenetic impact of long-term shiftwork: Pilot evidence from circadian genes and whole-genome methylation analysis
-
Zhu, Y. et al. Epigenetic impact of long-term shiftwork: pilot evidence from circadian genes and whole-genome methylation analysis. Chronobiol. Int. 28, 852-861 (2011).
-
(2011)
Chronobiol. Int.
, vol.28
, pp. 852-861
-
-
Zhu, Y.1
-
29
-
-
84867286546
-
CLOCK, PER2 and BMAL1 DNA methylation: Association with obesity and metabolic syndrome characteristics and monounsaturated fat intake
-
Milagro, F.I. et al. CLOCK, PER2 and BMAL1 DNA methylation: association with obesity and metabolic syndrome characteristics and monounsaturated fat intake. Chronobiol. Int. 29, 1180-1194 (2012).
-
(2012)
Chronobiol. Int.
, vol.29
, pp. 1180-1194
-
-
Milagro, F.I.1
-
30
-
-
84866076846
-
Diurnal expression of Dnmt3b mRNA in mouse liver is regulated by feeding and hepatic clockwork
-
Maekawa, F. et al. Diurnal expression of Dnmt3b mRNA in mouse liver is regulated by feeding and hepatic clockwork. Epigenetics 7, 1046-1056 (2012).
-
(2012)
Epigenetics
, vol.7
, pp. 1046-1056
-
-
Maekawa, F.1
-
31
-
-
33744920106
-
Evidence that DNA (cytosine-5) methyltransferase regulates synaptic plasticity in the hippocampus
-
DOI 10.1074/jbc.M511767200
-
Levenson, J.M. et al. Evidence that DNA (cytosine-5) methyltransferase regulates synaptic plasticity in the hippocampus. J. Biol. Chem. 281, 15763-15773 (2006). (Pubitemid 43848466)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.23
, pp. 15763-15773
-
-
Levenson, J.M.1
Roth, T.L.2
Lubin, F.D.3
Miller, C.A.4
Huang, I.-C.5
Desai, P.6
Malone, L.M.7
Sweatt, J.D.8
-
32
-
-
78650676643
-
Perinatal photoperiod imprints the circadian clock
-
Ciarleglio, C.M., Axley, J.C., Strauss, B.R., Gamble, K.L. & McMahon, D.G. Perinatal photoperiod imprints the circadian clock. Nat. Neurosci. 14, 25-27 (2011).
-
(2011)
Nat. Neurosci.
, vol.14
, pp. 25-27
-
-
Ciarleglio, C.M.1
Axley, J.C.2
Strauss, B.R.3
Gamble, K.L.4
McMahon, D.G.5
-
33
-
-
11144300895
-
A marker for the end of adolescence
-
DOI 10.1016/j.cub.2004.11.039, PII S0960982204009285
-
Roenneberg, T. et al. A marker for the end of adolescence. Curr. Biol. 14, R1038-R1039 (2004). (Pubitemid 40033344)
-
(2004)
Current Biology
, vol.14
, Issue.24
-
-
Roenneberg, T.1
Kuehnle, T.2
Pramstaller, P.P.3
Ricken, J.4
Havel, M.5
Guth, A.6
Merrow, M.7
-
34
-
-
79955561971
-
Serum factors in older individuals change cellular clock properties
-
Pagani, L. et al. Serum factors in older individuals change cellular clock properties. Proc. Natl. Acad. Sci. USA 108, 7218-7223 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 7218-7223
-
-
Pagani, L.1
-
35
-
-
84884471932
-
TET1 controls CNS 5-methylcytosine hydroxylation, active DNA demethylation, gene transcription, and memory formation
-
Kaas, G.A. et al. TET1 controls CNS 5-methylcytosine hydroxylation, active DNA demethylation, gene transcription, and memory formation. Neuron 79, 1086-1093 (2013).
-
(2013)
Neuron
, vol.79
, pp. 1086-1093
-
-
Kaas, G.A.1
-
36
-
-
84884241288
-
Tet1 is critical for neuronal activity-regulated gene expression and memory extinction
-
Rudenko, A. et al. Tet1 is critical for neuronal activity-regulated gene expression and memory extinction. Neuron 79, 1109-1122 (2013).
-
(2013)
Neuron
, vol.79
, pp. 1109-1122
-
-
Rudenko, A.1
-
37
-
-
84874076991
-
Epigenetic regulation of memory formation and maintenance
-
Zovkic, I.B., Guzman-Karlsson, M.C. & Sweatt, J.D. Epigenetic regulation of memory formation and maintenance. Learn. Mem. 20, 61-74 (2013).
-
(2013)
Learn. Mem.
, vol.20
, pp. 61-74
-
-
Zovkic, I.B.1
Guzman-Karlsson, M.C.2
Sweatt, J.D.3
-
38
-
-
84870152439
-
5-Methylcytosine DNA demethylation: More than losing a methyl group
-
Franchini, D.M., Schmitz, K.M. & Petersen-Mahrt, S.K. 5-Methylcytosine DNA demethylation: more than losing a methyl group. Annu. Rev. Genet. 46, 419-441 (2012).
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 419-441
-
-
Franchini, D.M.1
Schmitz, K.M.2
Petersen-Mahrt, S.K.3
-
39
-
-
58249133996
-
Inhibition of cytidine deaminase by zebularine enhances the antineoplastic action of 5-aza-2′-deoxycytidine
-
Lemaire, M., Momparler, L.F., Raynal, N.J., Bernstein, M.L. & Momparler, R.L. Inhibition of cytidine deaminase by zebularine enhances the antineoplastic action of 5-aza-2′-deoxycytidine. Cancer Chemother. Pharmacol. 63, 411-416 (2009).
-
(2009)
Cancer Chemother. Pharmacol.
, vol.63
, pp. 411-416
-
-
Lemaire, M.1
Momparler, L.F.2
Raynal, N.J.3
Bernstein, M.L.4
Momparler, R.L.5
-
40
-
-
0037125939
-
Rhythms of mammalian body temperature can sustain peripheral circadian clocks
-
Brown, S.A., Zumbrunn, G., Fleury-Olela, F., Preitner, N. & Schibler, U. Rhythms of mammalian body temperature can sustain peripheral circadian clocks. Curr. Biol. 12, 1574-1583 (2002).
-
(2002)
Curr. Biol.
, vol.12
, pp. 1574-1583
-
-
Brown, S.A.1
Zumbrunn, G.2
Fleury-Olela, F.3
Preitner, N.4
Schibler, U.5
-
41
-
-
84856485053
-
GeneProf: Analysis of high-throughput sequencing experiments
-
Halbritter, F., Vaidya, H.J. & Tomlinson, S.R. GeneProf: analysis of high-throughput sequencing experiments. Nat. Methods 9, 7-8 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 7-8
-
-
Halbritter, F.1
Vaidya, H.J.2
Tomlinson, S.R.3
-
42
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. & Salzberg, S.L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
43
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010).
-
(2010)
Genome Biol.
, vol.11
-
-
Anders, S.1
Huber, W.2
-
44
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
-
DOI 10.1038/ng1598
-
Weber, M. et al. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet. 37, 853-862 (2005). (Pubitemid 41077111)
-
(2005)
Nature Genetics
, vol.37
, Issue.8
, pp. 853-862
-
-
Weber, M.1
Davies, J.J.2
Wittig, D.3
Oakeley, E.J.4
Haase, M.5
Lam, W.L.6
Schubeler, D.7
-
45
-
-
77956637544
-
DNA demethylase activity maintains intestinal cells in an undifferentiated state following loss of APC
-
Rai, K. et al. DNA demethylase activity maintains intestinal cells in an undifferentiated state following loss of APC. Cell 142, 930-942 (2010).
-
(2010)
Cell
, vol.142
, pp. 930-942
-
-
Rai, K.1
-
46
-
-
35748962754
-
Model-based analysis of two-color arrays (MA2C)
-
Song, J.S. et al. Model-based analysis of two-color arrays (MA2C). Genome Biol. 8, R178 (2007).
-
(2007)
Genome Biol.
, vol.8
-
-
Song, J.S.1
-
47
-
-
0035930732
-
Regulation of daily locomotor activity and sleep by hypothalamic EGF receptor signating
-
DOI 10.1126/science.1067716
-
Kramer, A. et al. Regulation of daily locomotor activity and sleep by hypothalamic EGF receptor signaling. Science 294, 2511-2515 (2001). (Pubitemid 34027284)
-
(2001)
Science
, vol.294
, Issue.5551
, pp. 2511-2515
-
-
Kramer, A.1
Yang, F.-C.2
Snodgrass, P.3
Li, X.4
Scammell, T.E.5
Davis, F.C.6
Weitz, C.J.7
-
48
-
-
34247526990
-
CLOCK and NPAS2 have overlapping roles in the suprachiasmatic circadian clock
-
DOI 10.1038/nn1884, PII NN1884
-
DeBruyne, J.P., Weaver, D.R. & Reppert, S.M. CLOCK and NPAS2 have overlapping roles in the suprachiasmatic circadian clock. Nat. Neurosci. 10, 543-545 (2007). (Pubitemid 46652441)
-
(2007)
Nature Neuroscience
, vol.10
, Issue.5
, pp. 543-545
-
-
DeBruyne, J.P.1
Weaver, D.R.2
Reppert, S.M.3
-
49
-
-
84868699286
-
Distinct roles of DBHS family members in the circadian transcriptional feedback loop
-
Kowalska, E. et al. Distinct roles of DBHS family members in the circadian transcriptional feedback loop. Mol. Cell. Biol. 32, 4585-4594 (2012).
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 4585-4594
-
-
Kowalska, E.1
-
50
-
-
33846107211
-
Evaluation of a quantitative DNA methylation analysis technique using methylation-sensitive/dependent restriction enzymes and real-time PCR
-
Oakes, C.C., La Salle, S., Robaire, B. & Trasler, J.M. Evaluation of a quantitative DNA methylation analysis technique using methylation-sensitive/ dependent restriction enzymes and real-time PCR. Epigenetics 1, 146-152 (2006).
-
(2006)
Epigenetics
, vol.1
, pp. 146-152
-
-
Oakes, C.C.1
La Salle, S.2
Robaire, B.3
Trasler, J.M.4
-
51
-
-
63049126277
-
A large-scale functional RNAi screen reveals a role for CK2 in the mammalian circadian clock
-
Maier, B. et al. A large-scale functional RNAi screen reveals a role for CK2 in the mammalian circadian clock. Genes Dev. 23, 708-718 (2009).
-
(2009)
Genes Dev.
, vol.23
, pp. 708-718
-
-
Maier, B.1
|