Iterative deblurring of large 3D datasets from cryomicrotome imaging using an array of GPUs

Lecture Notes in Earth System Sciences

Volumn 0, Issue 9783642164040, 2013, Pages 573-585

  Geenen, Thomas ^a   van Horssen, Pepijn ^a   Spaan, Jos A E ^a   Siebes, Maria ^a   van den Wijngaard, Jeroen P H M ^a  

^a ACADEMIC MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

DATA SET; IMAGING METHOD; SOFTWARE;

EID: 84896696666     PISSN: 21938571     EISSN: 2193858X     Source Type: Book Series    
DOI: 10.1007/978-3-642-16405-7_36     Document Type: Chapter

References (14)

1. Abrash M (1989) Michael Abrash’s Ggraphics Programming Black Book (Special edition). Coriolis Group Books, Scottsdale.
2. Dmitruk P, Wang LP, Matthaeus WH, Zhang R, Seckel D (2001) Scalable parallel FFT for spectral simulations on a beowulf cluster. Parallel Comput 27(14):1921–1936.
3. Fialka O, Cadik M (2006) FFT and convolution performance in image filtering on GPU. Proceedings of the Conference on Information Visualization, IEEE Computer Society, pp 609–614.
4. Frigo M, Johnson SG (2005) The design and implementation of FFTW3. In: Proceedings of the IEEE, Special issue on Program Generation, Optimization, and Platform. Adaptation 93(231):216–231.
5. Nguyen H (2007) GPU Gems 3. Addison-Wesley Professional, Boston.
6. Palágyi K (1998) 3D 6-subiteration thinning algorithm for extracting medial lines. Pattern Recognit Lett 19(7):613–627.
7. Podlozhnyuk V (2009) Image convolution with CUDA. White paper, NVIDIA CUDA SDK.
8. Rolf MP, ter Wee R, van Leeuwen TG, Spaan JAE, Streekstra GJ (2008) Diameter measurement from images of fluorescent cylinders embedded in tissue. Med Biol Eng Comput 46(6):589–596.
9. Spaan J, ter Wee R, van Teeffelen J, Streekstra G, Siebes M, Kolyva C, Vink H, Fokkema D, van Bavel E (2005) Visualisation of intramuralcoronary vasculature by an imaging cryomicrotome suggests compartmentalisation of myocardial perfusion areas. Med Biol Eng Comput 10(4):431–435.
10. Theußl T, Hauser H, Gröller E (2000) Mastering windows: improving reconstruction. In: Proceedings of the (2000) IEEE Symposium on Volume Visualization (VVS’ 00). ACM, New York, pp 101–108.
11. van den Wijngaard J, van Horssen P, ter Wee R, Coronel R, deBakker J, de Jonge N, Siebes M, Spaan J (2010) Organization and collateralization of a subendocardial plexus in end-stage human heart failure. Am J Physiol Heart Circ Physiol 1(298):158–162.
12. van Horssen P, Siebes M, Hoefer I, Spaan J, van den Wijngaard J (2010) Improved detection of fluorescently labeled microspheres and vessel architecture with an imaging cryomicrotome. Med Biol Eng Comput 48:735–744.
13. Wendykier P (2009) High performance Java software for image processing. Emory University, Atlanta, PhD thesis.
14. Wendykier P, Nagy J (2008) Large-scale image deblurring in Java. In: Computational Science ICCS 2008, pp 721–730.