-
1
-
-
82955247986
-
Co-evolution between transposable elements and their hosts: a major factor in genome size evolution?
-
Ågren JA, Wright SI. 2011. Co-evolution between transposable elements and their hosts: a major factor in genome size evolution? Chromosome Research 19: 777-786.
-
(2011)
Chromosome Research
, vol.19
, pp. 777-786
-
-
Ågren, J.A.1
Wright, S.I.2
-
2
-
-
33745256005
-
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
-
Anisimova M, Gascuel O. 2006. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Systematic Biology 55: 539-552.
-
(2006)
Systematic Biology
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
3
-
-
0035211272
-
Analysis and evolution of two functional Y-linked loci in a plant sex chromosome system
-
Atanassov I, Delichère C, Filatov DA, Charlesworth D, Negrutiu I, Moneger F. 2001. Analysis and evolution of two functional Y-linked loci in a plant sex chromosome system. Molecular Biology and Evolution 18: 2162-2168.
-
(2001)
Molecular Biology and Evolution
, vol.18
, pp. 2162-2168
-
-
Atanassov, I.1
Delichère, C.2
Filatov, D.A.3
Charlesworth, D.4
Negrutiu, I.5
Moneger, F.6
-
4
-
-
84872503128
-
Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration
-
Bachtrog D. 2013. Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration. Nature Reviews Genetics 14: 113-124.
-
(2013)
Nature Reviews Genetics
, vol.14
, pp. 113-124
-
-
Bachtrog, D.1
-
5
-
-
0031260303
-
Isolation of early genes expressed in reproductive organs of the dioecious white campion (Silene latifolia) by subtraction cloning using an asexual mutant
-
Barbacar N, Hinnisdaels S, Farbos I, Monéger F, Lardon A, Delichère C, Mouras A, Negrutiu I. 1997. Isolation of early genes expressed in reproductive organs of the dioecious white campion (Silene latifolia) by subtraction cloning using an asexual mutant. Plant Journal 12: 805-817.
-
(1997)
Plant Journal
, vol.12
, pp. 805-817
-
-
Barbacar, N.1
Hinnisdaels, S.2
Farbos, I.3
Monéger, F.4
Lardon, A.5
Delichère, C.6
Mouras, A.7
Negrutiu, I.8
-
6
-
-
59949097135
-
Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome
-
Baucom RS, Estill JC, Leebens-Mack J, Bennetzen JL. 2009. Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome. Genome Research 19: 243-254.
-
(2009)
Genome Research
, vol.19
, pp. 243-254
-
-
Baucom, R.S.1
Estill, J.C.2
Leebens-Mack, J.3
Bennetzen, J.L.4
-
7
-
-
34248998839
-
Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: evidence from new sex-linked genes
-
Bergero R, Forrest A, Kamau E, Charlesworth D. 2007. Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: evidence from new sex-linked genes. Genetics 175: 1945-1954.
-
(2007)
Genetics
, vol.175
, pp. 1945-1954
-
-
Bergero, R.1
Forrest, A.2
Kamau, E.3
Charlesworth, D.4
-
8
-
-
34547471449
-
Recent retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster
-
Bergman CM, Bensasson D. 2007. Recent retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster. Proceedings of the National Academy of Sciences, USA 104: 11340-11345.
-
(2007)
Proceedings of the National Academy of Sciences, USA
, vol.104
, pp. 11340-11345
-
-
Bergman, C.M.1
Bensasson, D.2
-
9
-
-
0032568799
-
Yeast retrotransposons: finding a nice quiet neighborhood
-
Boeke JD, Devine SE. 1998. Yeast retrotransposons: finding a nice quiet neighborhood. Cell 93: 1087-1089.
-
(1998)
Cell
, vol.93
, pp. 1087-1089
-
-
Boeke, J.D.1
Devine, S.E.2
-
10
-
-
34347253930
-
In situ hybridization for mRNA detection in Arabidopsis tissue sections
-
Brewer PB, Heisler MG, Hejatko J, Friml J, Benova E. 2006. In situ hybridization for mRNA detection in Arabidopsis tissue sections. Nature Protocols 1: 1462-1467.
-
(2006)
Nature Protocols
, vol.1
, pp. 1462-1467
-
-
Brewer, P.B.1
Heisler, M.G.2
Hejatko, J.3
Friml, J.4
Benova, E.5
-
11
-
-
28144462457
-
Genome-wide analysis of retroviral DNA integration
-
Buschman F, Lewinski M, Ciuffi A, Barr S, Leipzig J, Hannenhalli S, Hoffmann C. 2005. Genome-wide analysis of retroviral DNA integration. Nature Reviews Microbiology 3: 848-858.
-
(2005)
Nature Reviews Microbiology
, vol.3
, pp. 848-858
-
-
Buschman, F.1
Lewinski, M.2
Ciuffi, A.3
Barr, S.4
Leipzig, J.5
Hannenhalli, S.6
Hoffmann, C.7
-
12
-
-
0031060377
-
Tethering human immunodeficiency virus type 1 preintegration complexes to target DNA promotes integration at nearby sites
-
Buschman F, Miller MD. 1997. Tethering human immunodeficiency virus type 1 preintegration complexes to target DNA promotes integration at nearby sites. Journal of Virology 71: 458-464.
-
(1997)
Journal of Virology
, vol.71
, pp. 458-464
-
-
Buschman, F.1
Miller, M.D.2
-
13
-
-
0028074881
-
Tethering human immunodeficiency virus 1 integrase to a DNA site directs integration to nearby sequences
-
Buschman FD. 1994. Tethering human immunodeficiency virus 1 integrase to a DNA site directs integration to nearby sequences. Proceedings of the National Academy of Sciences, USA 91: 9233-9237.
-
(1994)
Proceedings of the National Academy of Sciences, USA
, vol.91
, pp. 9233-9237
-
-
Buschman, F.D.1
-
14
-
-
84867053720
-
Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA
-
Calarco JP, Borges F, Donoghue MTA, Van Ex F, Jullien PE, Lopes T, Gardner R, Berger F, Feijó JA, Becker JD et al. 2012. Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. Cell 151: 194-205.
-
(2012)
Cell
, vol.151
, pp. 194-205
-
-
Calarco, J.P.1
Borges, F.2
Donoghue, M.T.A.3
Van Ex, F.4
Jullien, P.E.5
Lopes, T.6
Gardner, R.7
Berger, F.8
Feijó, J.A.9
Becker, J.D.10
-
15
-
-
84868601193
-
Imprinting: DNA methyltransferases illuminate reprogramming
-
Calarco JP, Martienssen RA. 2012. Imprinting: DNA methyltransferases illuminate reprogramming. Current Biology 22: R929-R931.
-
(2012)
Current Biology
, vol.22
-
-
Calarco, J.P.1
Martienssen, R.A.2
-
16
-
-
77955605935
-
Structure and evolution of Apetala3, a sex-linked gene in Silene latifolia
-
Cegan R, Marais GAB, Kubekova H, Blavet N, Widmer A, Vyskot B, Dolezel J, Safár J, Hobza R. 2010. Structure and evolution of Apetala3, a sex-linked gene in Silene latifolia. BMC Plant Biology 10: 180.
-
(2010)
BMC Plant Biology
, vol.10
, pp. 180
-
-
Cegan, R.1
Marais, G.A.B.2
Kubekova, H.3
Blavet, N.4
Widmer, A.5
Vyskot, B.6
Dolezel, J.7
Safár, J.8
Hobza, R.9
-
17
-
-
84857671845
-
Genomic diversity in two related plant species with and without sex chromosomes - Silene latifolia and S. vulgaris
-
Cegan R, Vyskot B, Kejnovsky E, Kubat Z, Blavet H, Šafář J, Doležel J, Blavet N, Hobza R. 2012. Genomic diversity in two related plant species with and without sex chromosomes - Silene latifolia and S. vulgaris. PLoS ONE 7: e31898.
-
(2012)
PLoS ONE
, vol.7
-
-
Cegan, R.1
Vyskot, B.2
Kejnovsky, E.3
Kubat, Z.4
Blavet, H.5
Šafář, J.6
Doležel, J.7
Blavet, N.8
Hobza, R.9
-
18
-
-
55149110544
-
Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes
-
Cermak T, Kubat Z, Hobza R, Koblizkova A, Widmer A, Macas J, Vyskot B, Kejnovsky E. 2008. Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes. Chromosome Research 16: 961-976.
-
(2008)
Chromosome Research
, vol.16
, pp. 961-976
-
-
Cermak, T.1
Kubat, Z.2
Hobza, R.3
Koblizkova, A.4
Widmer, A.5
Macas, J.6
Vyskot, B.7
Kejnovsky, E.8
-
19
-
-
0025906872
-
The evolution of sex chromosomes
-
Charlesworth B. 1991. The evolution of sex chromosomes. Science 251: 1030-1033.
-
(1991)
Science
, vol.251
, pp. 1030-1033
-
-
Charlesworth, B.1
-
21
-
-
0345493917
-
SlY1, the first active gene cloned from a plant Y chromosome, encodes a WD-repeat protein
-
Delichère C, Veuskens J, Hernould M, Barbacar N, Mouras A, Negrutiu I, Monéger F. 1999. SlY1, the first active gene cloned from a plant Y chromosome, encodes a WD-repeat protein. EMBO Journal 18: 4169-4179.
-
(1999)
EMBO Journal
, vol.18
, pp. 4169-4179
-
-
Delichère, C.1
Veuskens, J.2
Hernould, M.3
Barbacar, N.4
Mouras, A.5
Negrutiu, I.6
Monéger, F.7
-
22
-
-
0036061848
-
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
-
Devos KM, Brown JKM, Bennetzen JL. 2002. Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Research 12: 1075-1079.
-
(2002)
Genome Research
, vol.12
, pp. 1075-1079
-
-
Devos, K.M.1
Brown, J.K.M.2
Bennetzen, J.L.3
-
23
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
24
-
-
62449092544
-
Recent spread of a retrotransposon in the Silene latifolia genome, apart from the Y chromosome
-
Filatov DA, Howell EC, Groutides C, Armstrong SJ. 2009. Recent spread of a retrotransposon in the Silene latifolia genome, apart from the Y chromosome. Genetics 181: 811-817.
-
(2009)
Genetics
, vol.181
, pp. 811-817
-
-
Filatov, D.A.1
Howell, E.C.2
Groutides, C.3
Armstrong, S.J.4
-
25
-
-
0024505998
-
Eukaryotic transposable elements and genome evolution
-
Finnegan DJ. 1989. Eukaryotic transposable elements and genome evolution. Trends in Genetics 5: 103-107.
-
(1989)
Trends in Genetics
, vol.5
, pp. 103-107
-
-
Finnegan, D.J.1
-
26
-
-
40449136688
-
Chromodomains direct integration of retrotransposons to heterochromatin
-
Gao X, Hou Y, Ebina H, Levin HL, Voytas DF. 2008. Chromodomains direct integration of retrotransposons to heterochromatin. Genome Research 18: 359-363.
-
(2008)
Genome Research
, vol.18
, pp. 359-363
-
-
Gao, X.1
Hou, Y.2
Ebina, H.3
Levin, H.L.4
Voytas, D.F.5
-
27
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring M, Bubb KL, Henikoff S. 2009. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 324: 1447-1451.
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
28
-
-
0028139745
-
Developmental differences between male and female flowers in the dioecious plant Silene latifolia
-
Grant S, Hunkirchen B, Saedler H. 1994. Developmental differences between male and female flowers in the dioecious plant Silene latifolia. Plant Journal 6: 471-480.
-
(1994)
Plant Journal
, vol.6
, pp. 471-480
-
-
Grant, S.1
Hunkirchen, B.2
Saedler, H.3
-
29
-
-
84870942752
-
In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing
-
Haag JR, Ream TS, Marasco M, Nicora CD, Norbeck AD, Pasa-Tolic L, Pikaard CS. 2012. In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing. Molecular Cell 48: 811-818.
-
(2012)
Molecular Cell
, vol.48
, pp. 811-818
-
-
Haag, J.R.1
Ream, T.S.2
Marasco, M.3
Nicora, C.D.4
Norbeck, A.D.5
Pasa-Tolic, L.6
Pikaard, C.S.7
-
30
-
-
33749389724
-
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
-
Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF. 2006. Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Research 16: 1252-1261.
-
(2006)
Genome Research
, vol.16
, pp. 1252-1261
-
-
Hawkins, J.S.1
Kim, H.2
Nason, J.D.3
Wing, R.A.4
Wendel, J.F.5
-
31
-
-
70449601785
-
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants
-
Hawkins JS, Proulx SR, Rapp RA, Wendel JF. 2009. Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants. Proceedings of the National Academy of Sciences, USA 106: 17811-17816.
-
(2009)
Proceedings of the National Academy of Sciences, USA
, vol.106
, pp. 17811-17816
-
-
Hawkins, J.S.1
Proulx, S.R.2
Rapp, R.A.3
Wendel, J.F.4
-
33
-
-
33747888424
-
An accumulation of tandem DNA repeats on the Y chromosome in Silene latifolia during early stages of sex chromosome evolution
-
Hobza R, Lengerova M, Svoboda J, Kubekova H, Kejnovsky E, Vyskot B. 2006. An accumulation of tandem DNA repeats on the Y chromosome in Silene latifolia during early stages of sex chromosome evolution. Chromosoma 115: 376-382.
-
(2006)
Chromosoma
, vol.115
, pp. 376-382
-
-
Hobza, R.1
Lengerova, M.2
Svoboda, J.3
Kubekova, H.4
Kejnovsky, E.5
Vyskot, B.6
-
34
-
-
70349962212
-
Evolution of neo-sex chromosomes in Silene diclinis
-
Howell EC, Armstrong SJ, Filatov DA. 2009. Evolution of neo-sex chromosomes in Silene diclinis. Genetics 182: 1109-1115.
-
(2009)
Genetics
, vol.182
, pp. 1109-1115
-
-
Howell, E.C.1
Armstrong, S.J.2
Filatov, D.A.3
-
35
-
-
67149119197
-
Genome-wide demethylation of Arabidopsis endosperm
-
Hsieh TF, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman D. 2009. Genome-wide demethylation of Arabidopsis endosperm. Science 324: 1451-1454.
-
(2009)
Science
, vol.324
, pp. 1451-1454
-
-
Hsieh, T.F.1
Ibarra, C.A.2
Silva, P.3
Zemach, A.4
Eshed-Williams, L.5
Fischer, R.L.6
Zilberman, D.7
-
36
-
-
84866140080
-
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
-
Ibarra CA, Feng X, Schoft VK, Hsieh T-F, Uzawa R, Rodrigues JA, Zemach A, Chumak N, Machlicova A, Nishimura T et al. 2012. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science 337: 1360-1364.
-
(2012)
Science
, vol.337
, pp. 1360-1364
-
-
Ibarra, C.A.1
Feng, X.2
Schoft, V.K.3
Hsieh, T.-F.4
Uzawa, R.5
Rodrigues, J.A.6
Zemach, A.7
Chumak, N.8
Machlicova, A.9
Nishimura, T.10
-
37
-
-
84867405328
-
DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana
-
Jullien PE, Susaki D, Yelagandula R, Higashiyama T, Berger F. 2012. DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana. Current Biology 22: 1825-1830.
-
(2012)
Current Biology
, vol.22
, pp. 1825-1830
-
-
Jullien, P.E.1
Susaki, D.2
Yelagandula, R.3
Higashiyama, T.4
Berger, F.5
-
38
-
-
33747891374
-
Accumulation of chloroplast DNA sequences on the Y chromosome of Silene latifolia
-
Kejnovsky E, Kubat Z, Hobza R, Lengerova M, Sato I, Tabata S, Fukui K, Matsunaga S, Vyskot B. 2006b. Accumulation of chloroplast DNA sequences on the Y chromosome of Silene latifolia. Genetica 128: 167-175.
-
(2006)
Genetica
, vol.128
, pp. 167-175
-
-
Kejnovsky, E.1
Kubat, Z.2
Hobza, R.3
Lengerova, M.4
Sato, I.5
Tabata, S.6
Fukui, K.7
Matsunaga, S.8
Vyskot, B.9
-
39
-
-
33747594053
-
Retand: a novel family of gypsy-like retrotransposons harboring an amplified tandem repeat
-
Kejnovsky E, Kubat Z, Macas J, Hobza R, Mracek J, Vyskot B. 2006a. Retand: a novel family of gypsy-like retrotransposons harboring an amplified tandem repeat. Molecular Genetics and Genomics 276: 254-263.
-
(2006)
Molecular Genetics and Genomics
, vol.276
, pp. 254-263
-
-
Kejnovsky, E.1
Kubat, Z.2
Macas, J.3
Hobza, R.4
Mracek, J.5
Vyskot, B.6
-
40
-
-
84857554348
-
Bisprimer - a program for the design of primers for bisulfite-based genomic sequencing of both plant and mammalian DNA samples
-
Kovacova V, Janousek B. 2012. Bisprimer - a program for the design of primers for bisulfite-based genomic sequencing of both plant and mammalian DNA samples. Journal of Heredity 103: 308-312.
-
(2012)
Journal of Heredity
, vol.103
, pp. 308-312
-
-
Kovacova, V.1
Janousek, B.2
-
41
-
-
44449104985
-
Microsatellite accumulation on the Y chromosome in Silene latifolia
-
Kubat Z, Hobza R, Vyskot B, Kejnovsky E. 2008. Microsatellite accumulation on the Y chromosome in Silene latifolia. Genome 51: 350-356.
-
(2008)
Genome
, vol.51
, pp. 350-356
-
-
Kubat, Z.1
Hobza, R.2
Vyskot, B.3
Kejnovsky, E.4
-
43
-
-
84879417659
-
Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
-
Law JA, Du J, Hale CJ, Feng S, Krajewski K, Palanca AM, Strahl BD, Patel DJ, Jacobsen SE. 2013. Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature 498: 385-389.
-
(2013)
Nature
, vol.498
, pp. 385-389
-
-
Law, J.A.1
Du, J.2
Hale, C.J.3
Feng, S.4
Krajewski, K.5
Palanca, A.M.6
Strahl, B.D.7
Patel, D.J.8
Jacobsen, S.E.9
-
44
-
-
2442534171
-
Multicolor FISH mapping of the dioecious model plant, Silene latifolia
-
Lengerova M, Kejnovsky E, Hobza R, Macas J, Grant SR, Vyskot B. 2004. Multicolor FISH mapping of the dioecious model plant, Silene latifolia. Theoretical and Applied Genetics 108: 1193-1199.
-
(2004)
Theoretical and Applied Genetics
, vol.108
, pp. 1193-1199
-
-
Lengerova, M.1
Kejnovsky, E.2
Hobza, R.3
Macas, J.4
Grant, S.R.5
Vyskot, B.6
-
45
-
-
33745684269
-
Retroviral DNA integration: viral and cellular determinants of target-site selection
-
Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S et al. 2006. Retroviral DNA integration: viral and cellular determinants of target-site selection. PLoS Pathogens 2: e60.
-
(2006)
PLoS Pathogens
, vol.2
-
-
Lewinski, M.K.1
Yamashita, M.2
Emerman, M.3
Ciuffi, A.4
Marshall, H.5
Crawford, G.6
Collins, F.7
Shinn, P.8
Leipzig, J.9
Hannenhalli, S.10
-
46
-
-
80655139062
-
Next generation sequencing-based analysis of repetitive DNA in the model dioecious plant Silene latifolia
-
Macas J, Kejnovský E, Neumann P, Novák P, Koblížková A, Vyskot B. 2011. Next generation sequencing-based analysis of repetitive DNA in the model dioecious plant Silene latifolia. PLoS ONE 6: e27335.
-
(2011)
PLoS ONE
, vol.6
-
-
Macas, J.1
Kejnovský, E.2
Neumann, P.3
Novák, P.4
Koblížková, A.5
Vyskot, B.6
-
47
-
-
33846940441
-
Ogre elements - a distinct group of plant Ty3/gypsy-like retrotransposons
-
Macas J, Neumann P. 2007. Ogre elements - a distinct group of plant Ty3/gypsy-like retrotransposons. Gene 390: 108-116.
-
(2007)
Gene
, vol.390
, pp. 108-116
-
-
Macas, J.1
Neumann, P.2
-
48
-
-
0037278243
-
Genetic and functional analysis of DD44, a sex-linked gene from the dioecious plant Silene latifolia, provides clues to early events in sex chromosome evolution
-
Moore RC, Kozyreva O, Lebel-Hardenack S, Siroky J, Hobza R, Vyskot B, Grant SR. 2003. Genetic and functional analysis of DD44, a sex-linked gene from the dioecious plant Silene latifolia, provides clues to early events in sex chromosome evolution. Genetics 163: 321-334.
-
(2003)
Genetics
, vol.163
, pp. 321-334
-
-
Moore, R.C.1
Kozyreva, O.2
Lebel-Hardenack, S.3
Siroky, J.4
Hobza, R.5
Vyskot, B.6
Grant, S.R.7
-
49
-
-
33845189717
-
Dramatic amplification of a rice transposable element during recent domestication
-
Naito K, Cho E, Yang G, Campbell MA, Yano K. 2006. Dramatic amplification of a rice transposable element during recent domestication. Proceedings of the National Academy of Sciences, USA 103: 17620-17625.
-
(2006)
Proceedings of the National Academy of Sciences, USA
, vol.103
, pp. 17620-17625
-
-
Naito, K.1
Cho, E.2
Yang, G.3
Campbell, M.A.4
Yano, K.5
-
50
-
-
33745371107
-
Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement
-
Neumann P, Koblkov A, Navrátilová A, Macas J. 2006. Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement. Genetics 173: 1047-1056.
-
(2006)
Genetics
, vol.173
, pp. 1047-1056
-
-
Neumann, P.1
Koblkov, A.2
Navrátilová, A.3
Macas, J.4
-
51
-
-
84855188031
-
Plant centromeric retrotransposons: a structural and cytogenetic perspective
-
Neumann P, Navrátilová A, Koblížková A, Kejnovský E, Hřibová E, Hobza R, Widmer A, Doležel J, Macas J. 2011. Plant centromeric retrotransposons: a structural and cytogenetic perspective. Mobile DNA 2: 4.
-
(2011)
Mobile DNA
, vol.2
, pp. 4
-
-
Neumann, P.1
Navrátilová, A.2
Koblížková, A.3
Kejnovský, E.4
Hřibová, E.5
Hobza, R.6
Widmer, A.7
Doležel, J.8
Macas, J.9
-
52
-
-
0346669745
-
Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced
-
Neumann P, Požárková D, Macas J. 2003. Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced. Plant Molecular Biology 53: 399-410.
-
(2003)
Plant Molecular Biology
, vol.53
, pp. 399-410
-
-
Neumann, P.1
Požárková, D.2
Macas, J.3
-
53
-
-
84856615436
-
About PAR: The distinct evolutionary dynamics of the pseudoautosomal region
-
Otto SP, Pannell JR, Peichel CL, Ashman TL, Charlesworth D, Chippindale AK, Delph LF, Guerrero RF, Scarpino SV, McAllister BF. 2011. About PAR: The distinct evolutionary dynamics of the pseudoautosomal region. Trends in Genetics 27: 358-367.
-
(2011)
Trends in Genetics
, vol.27
, pp. 358-367
-
-
Otto, S.P.1
Pannell, J.R.2
Peichel, C.L.3
Ashman, T.L.4
Charlesworth, D.5
Chippindale, A.K.6
Delph, L.F.7
Guerrero, R.F.8
Scarpino, S.V.9
McAllister, B.F.10
-
54
-
-
33749392949
-
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansion in Oryza australiensis, a wild relative of rice
-
Piegu B, Guyot R, Picault N, Roulin A, Sanyal A, Kim H, Collura K, Brar DS, Jackson S, Wing RA et al. 2006. Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansion in Oryza australiensis, a wild relative of rice. Genome Research 16: 1262-1269.
-
(2006)
Genome Research
, vol.16
, pp. 1262-1269
-
-
Piegu, B.1
Guyot, R.2
Picault, N.3
Roulin, A.4
Sanyal, A.5
Kim, H.6
Collura, K.7
Brar, D.S.8
Jackson, S.9
Wing, R.A.10
-
55
-
-
60549117866
-
Conflicting phylogenetic signals in the SlX1/Y1 gene in Silene
-
Rautenberg A, Filatov D, Svennblad B, Heidari N, Oxelman B. 2008. Conflicting phylogenetic signals in the SlX1/Y1 gene in Silene. BMC Evolutionary Biology 8: 299.
-
(2008)
BMC Evolutionary Biology
, vol.8
, pp. 299
-
-
Rautenberg, A.1
Filatov, D.2
Svennblad, B.3
Heidari, N.4
Oxelman, B.5
-
56
-
-
84867651695
-
Global alteration of microRNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during cotton leafroll dwarf polerovirus (CLRDV) infection
-
Romanel E, Silva TF, Corrêa RL, Farinelli L, Hawkins JS, Schrago CE, Vaslin MF. 2012. Global alteration of microRNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during cotton leafroll dwarf polerovirus (CLRDV) infection. Plant Molecular Biology 80: 443-460.
-
(2012)
Plant Molecular Biology
, vol.80
, pp. 443-460
-
-
Romanel, E.1
Silva, T.F.2
Corrêa, R.L.3
Farinelli, L.4
Hawkins, J.S.5
Schrago, C.E.6
Vaslin, M.F.7
-
57
-
-
0034489841
-
Site-specific accumulation of a LINE-like retrotransposon in a sex chromosome of the dioecious plant Cannabis sativa
-
Sakamoto K, Ohmido N, Fukui K, Kamada H, Satoh S. 2000. Site-specific accumulation of a LINE-like retrotransposon in a sex chromosome of the dioecious plant Cannabis sativa. Plant Molecular Biology 44: 723-732.
-
(2000)
Plant Molecular Biology
, vol.44
, pp. 723-732
-
-
Sakamoto, K.1
Ohmido, N.2
Fukui, K.3
Kamada, H.4
Satoh, S.5
-
58
-
-
0033852426
-
A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion
-
Shirasu K, Schulman AH, Lahaye T, Schulze-Lefert P. 2000. A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion. Genome Research 10: 908-915.
-
(2000)
Genome Research
, vol.10
, pp. 908-915
-
-
Shirasu, K.1
Schulman, A.H.2
Lahaye, T.3
Schulze-Lefert, P.4
-
59
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin RK, Vaughn M, Borges F, Tanurdžič M, Becker JC, Feijó JA, Martienssen RA. 2009. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136: 461-472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
Vaughn, M.2
Borges, F.3
Tanurdžič, M.4
Becker, J.C.5
Feijó, J.A.6
Martienssen, R.A.7
-
60
-
-
84884184154
-
Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa
-
Steflova P, Tokan V, Vogel I, Lexa M, Macas J, Novak P, Hobza R, Vyskot B, Kejnovsky E. 2013. Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa. Genome Biology and Evolution 5: 769-782.
-
(2013)
Genome Biology and Evolution
, vol.5
, pp. 769-782
-
-
Steflova, P.1
Tokan, V.2
Vogel, I.3
Lexa, M.4
Macas, J.5
Novak, P.6
Hobza, R.7
Vyskot, B.8
Kejnovsky, E.9
-
61
-
-
54349114240
-
Experimental evidence for splicing of intron-containing transcripts of plant LTR retrotransposon Ogre
-
Steinbauerová V, Neumann P, Macas J. 2008. Experimental evidence for splicing of intron-containing transcripts of plant LTR retrotransposon Ogre. Molecular Genetics and Genomics 280: 427-436.
-
(2008)
Molecular Genetics and Genomics
, vol.280
, pp. 427-436
-
-
Steinbauerová, V.1
Neumann, P.2
Macas, J.3
-
62
-
-
84860998859
-
A widespread occurence of extra open reading frames in plant Ty3/gypsy retrotransposons
-
Steinbauerová V, Neumann P, Novák P, Macas J. 2012. A widespread occurence of extra open reading frames in plant Ty3/gypsy retrotransposons. Genetica 139: 1543-1555.
-
(2012)
Genetica
, vol.139
, pp. 1543-1555
-
-
Steinbauerová, V.1
Neumann, P.2
Novák, P.3
Macas, J.4
-
64
-
-
70349276670
-
Bursts of retrotransposition reproduced in Arabidopsis
-
Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, Kakutani T. 2009. Bursts of retrotransposition reproduced in Arabidopsis. Nature 461: 423-426.
-
(2009)
Nature
, vol.461
, pp. 423-426
-
-
Tsukahara, S.1
Kobayashi, A.2
Kawabe, A.3
Mathieu, O.4
Miura, A.5
Kakutani, T.6
-
65
-
-
33750018038
-
Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation
-
Ungerer MC, Strakosh SC, Zhen Y. 2006. Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation. Current Biology 16: 872-873.
-
(2006)
Current Biology
, vol.16
, pp. 872-873
-
-
Ungerer, M.C.1
Strakosh, S.C.2
Zhen, Y.3
-
66
-
-
33845186134
-
Analysis of retrotransposon diversity uncovers properties and propensities in angiosperm genome evolution
-
Vitte C, Bennetzen JL. 2006. Analysis of retrotransposon diversity uncovers properties and propensities in angiosperm genome evolution. Proceedings of the National Academy of Sciences, USA 103: 17638-17643.
-
(2006)
Proceedings of the National Academy of Sciences, USA
, vol.103
, pp. 17638-17643
-
-
Vitte, C.1
Bennetzen, J.L.2
-
67
-
-
78751648738
-
Genetic variation of copia suppression in Drosophila melanogaster
-
Vu W, Nuzhdin SV. 2011. Genetic variation of copia suppression in Drosophila melanogaster. Heredity 106: 207-217.
-
(2011)
Heredity
, vol.106
, pp. 207-217
-
-
Vu, W.1
Nuzhdin, S.V.2
-
68
-
-
84869489307
-
The role of long non-coding RNA in transcriptional gene silencing
-
Wierzbicki AT. 2012. The role of long non-coding RNA in transcriptional gene silencing. Current Opinion in Plant Biology 15: 517-522.
-
(2012)
Current Opinion in Plant Biology
, vol.15
, pp. 517-522
-
-
Wierzbicki, A.T.1
-
69
-
-
84865102012
-
Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome
-
Wierzbicki AT, Cocklin R, Mayampurath A, Lister R, Rowley MJ, Gregory BD, Ecker JR, Tang H, Pikaard CS. 2012. Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome. Genes and Development 26: 1825-1836.
-
(2012)
Genes and Development
, vol.26
, pp. 1825-1836
-
-
Wierzbicki, A.T.1
Cocklin, R.2
Mayampurath, A.3
Lister, R.4
Rowley, M.J.5
Gregory, B.D.6
Ecker, J.R.7
Tang, H.8
Pikaard, C.S.9
-
70
-
-
33745351130
-
Amplification of complex gene libraries by emulsion PCR
-
Williams R, Peisajovich SG, Miller OJ, Magdassi S, Tawfik DS, Griffiths AD. 2006. Amplification of complex gene libraries by emulsion PCR. Nature Methods 3: 545-550.
-
(2006)
Nature Methods
, vol.3
, pp. 545-550
-
-
Williams, R.1
Peisajovich, S.G.2
Miller, O.J.3
Magdassi, S.4
Tawfik, D.S.5
Griffiths, A.D.6
-
71
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution 24: 1586-1591.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
72
-
-
84875741680
-
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
-
Zemach A, Kim MY, Hsieh PH, Coleman-Derr D, Eshed-Williams L, Thao K, Harmer SL, Zilberman D. 2013. The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell 153: 193-205.
-
(2013)
Cell
, vol.153
, pp. 193-205
-
-
Zemach, A.1
Kim, M.Y.2
Hsieh, P.H.3
Coleman-Derr, D.4
Eshed-Williams, L.5
Thao, K.6
Harmer, S.L.7
Zilberman, D.8
-
73
-
-
22344442644
-
The inter-specific hybrid Silene latifolia × S. viscosa reveals early events of sex chromosome evolution
-
Zluvova J, Lengerova M, Markova M, Hobza R, Nicolas M, Vyskot B, Charlesworth D, Negrutiu I, Janousek B. 2005. The inter-specific hybrid Silene latifolia × S. viscosa reveals early events of sex chromosome evolution. Evolution and Development 7: 327-336.
-
(2005)
Evolution and Development
, vol.7
, pp. 327-336
-
-
Zluvova, J.1
Lengerova, M.2
Markova, M.3
Hobza, R.4
Nicolas, M.5
Vyskot, B.6
Charlesworth, D.7
Negrutiu, I.8
Janousek, B.9
-
74
-
-
33845475816
-
Premature arrest of the male flower meristem precedes sexual dimorphism in the dioecious plant Silene latifolia
-
Zluvova J, Nicolas M, Berger A, Negrutiu I, Monéger F. 2006. Premature arrest of the male flower meristem precedes sexual dimorphism in the dioecious plant Silene latifolia. Proceedings of the National Academy of Sciences, USA 103: 18854-18859.
-
(2006)
Proceedings of the National Academy of Sciences, USA
, vol.103
, pp. 18854-18859
-
-
Zluvova, J.1
Nicolas, M.2
Berger, A.3
Negrutiu, I.4
Monéger, F.5
-
75
-
-
77956631636
-
Dioecious Silene latifolia plants show sexual dimorphism in the vegetative stage
-
Zluvova J, Zak J, Janousek B, Vyskot B. 2010. Dioecious Silene latifolia plants show sexual dimorphism in the vegetative stage. BMC Plant Biology 10: 208.
-
(2010)
BMC Plant Biology
, vol.10
, pp. 208
-
-
Zluvova, J.1
Zak, J.2
Janousek, B.3
Vyskot, B.4
|