Proton-detected 2D radio frequency driven recoupling solid-state NMR studies on micelle-associated cytochrome-b5

Journal of Magnetic Resonance

Volumn 242, Issue , 2014, Pages 169-179

  Pandey, Manoj Kumar ^a   Vivekanandan, Subramanian ^a   Yamamoto, Kazutoshi ^a   Im, Sangchoul ^b   Waskell, Lucy ^b   Ramamoorthy, Ayyalusamy ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

Membrane protein; NOESY; RFDR

Indexed keywords

BIOLOGICAL MEMBRANES; COUPLINGS; EXPERIMENTS; MAGIC ANGLE SPINNING; MICELLES; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PEPTIDES; RADIO WAVES; SOLID STATE PHYSICS;

MAGIC ANGLE SPINNING (MAS) SOLIDSTATE NMR; MEMBRANE PROTEINS; MEMBRANE-ASSOCIATED PROTEINS; NOESY; NUCLEAR OVERHAUSER EFFECT SPECTROSCOPY; RFDR; SOLID-STATE NMR SPECTROSCOPY;

PROTONS;

CYTOCHROME B5; MICELLE;

AMINO ACID SEQUENCE; ANIMAL; CHEMISTRY; MICELLE; MOLECULAR GENETICS; PROCEDURES; PROTEIN CONFORMATION; PROTON NUCLEAR MAGNETIC RESONANCE; RABBIT; SIGNAL PROCESSING; ULTRASTRUCTURE;

AMINO ACID SEQUENCE; ANIMALS; CYTOCHROMES B5; MICELLES; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PROTON MAGNETIC RESONANCE SPECTROSCOPY; RABBITS; SIGNAL PROCESSING, COMPUTER-ASSISTED;

EID: 84896467950     PISSN: 10907807     EISSN: 10960856     Source Type: Journal    
DOI: 10.1016/j.jmr.2014.02.016     Document Type: Article

References (53)

1. S.A. Shahid, B. Bardiaux, W.T. Franks, L. Krabben, M. Habeck, B.J. van Rossum, and D. Linke Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals Nat. Methods 9 2012 1212 1217
2. 13C cross-polarization in fast magic angle spinning solid-state NMR spectroscopy J. Am. Chem. Soc. 130 2008 17216 17217
3. S. Wang, R.A. Munro, L. Shi, I. Kawamura, T. Okitsu, A. Wada, S.Y. Kim, K.H. Jung, L.S. Brown, and V. Ladizhansky Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein Nat. Methods 10 2013 1007 1012
4. M. Tang, G. Comellas, and C.M. Rienstra Advanced solid-state NMR approaches for structure determination of membrane proteins and amyloid fibrils Acc. Chem. Res. 46 2013 2080 2088
5. R. Linser, M. Dasari, M. Hiller, V. Higman, U. Fink, J.M. Lopez del Amo, S. Markovic, L. Handel, B. Kessler, P. Schmieder, D. Oesterhelt, H. Oschkinat, and B. Reif Proton-detected solid-state NMR spectroscopy of fibrillar and membrane proteins Angew. Chem. 50 2011 4508 4512
6. N.C. Nielsen, A. Malmendal, and T. Vosegaard Techniques and applications of NMR to membrane proteins (review) Mol. Membr. Biol. 21 2004 129 141 (Pubitemid 38745642)
7. A. McDermott Structure and dynamics of membrane proteins by magic angle spinning solid-state NMR Annu. Rev. Biophys. 38 2009 385 403
8. R. Tycko NMR at low and ultralow temperatures Acc. Chem. Res. 46 2013 1923 1932
9. G. De Paepe Dipolar recoupling in magic angle spinning solid-state nuclear magnetic resonance Annu. Rev. Phys. Chem. 63 63 2012 661 684
10. K.Y. Huang, A.B. Siemer, and A.E. McDermott Homonuclear mixing sequences for perdeuterated proteins J. Magn. Reson. 208 2011 122 127
11. D.H. Zhou, A.J. Nieuwkoop, D.A. Berthold, G. Comellas, L.J. Sperling, M. Tang, G.J. Shah, E.J. Brea, L.R. Lemkau, and C.M. Rienstra Solid-state NMR analysis of membrane proteins and protein aggregates by proton detected spectroscopy J. Biomol. NMR 54 2012 291 305
12. D.H. Zhou, G. Shah, M. Cormos, C. Mullen, D. Sandoz, and C.M. Rienstra Proton-detected solid-state NMR spectroscopy of fully protonated proteins at 40 kHz magic-angle spinning J. Am. Chem. Soc. 129 2007 11791 11801 (Pubitemid 47479927)
13. M. Huber, A. Bockmann, S. Hiller, and B.H. Meier 4D solid-state NMR for protein structure determination Phys. Chem. Chem. Phys. 14 2012 5239 5246
14. M. Huber, S. Hiller, P. Schanda, M. Ernst, A. Bockmann, R. Verel, and B.H. Meier A proton-detected 4D solid-state NMR experiment for protein structure determination ChemPhysChem 12 2011 915 918
15. 1H distance restraints for a microcrystalline protein with MAS solid-state NMR spectroscopy J. Am. Chem. Soc. 133 2011 5905 5912
16. Y. Nishiyama, M. Malon, Z. Gan, Y. Endo, and T. Nemoto Proton-nitrogen-14 overtone two-dimensional correlation NMR spectroscopy of solid-sample at very fast magic angle sample spinning J. Magn. Reson. 230 2013 160 164
17. M.E. Ward, L. Shi, E. Lake, S. Krishnamurthy, H. Hutchins, L.S. Brown, and V. Ladizhansky Proton-detected solid-state NMR reveals intramembrane polar networks in a seven-helical transmembrane protein proteorhodopsin J. Am. Chem. Soc. 133 2011 17434 17443
18. V.K. Morris, R. Linser, K.L. Wilde, A.P. Duff, M. Sunde, and A.H. Kwan Solid-state NMR spectroscopy of functional amyloid from a fungal hydrophobin: a well-ordered beta-sheet core amidst structural heterogeneity Angew. Chem. 51 2012 12621 12625
19. 1H-detected MAS solid-state NMR spectroscopy Angew. Chem. 52 2013 2345 2349
20. M.J. Knight, A.L. Webber, A.J. Pell, P. Guerry, E. Barbet-Massin, I. Bertini, I.C. Felli, L. Gonnelli, R. Pierattelli, L. Emsley, A. Lesage, T. Herrmann, and G. Pintacuda Fast resonance assignment and fold determination of human superoxide dismutase by high-resolution proton-detected solid-state MAS NMR spectroscopy Angew. Chem. 50 2011 11697 11701
21. M.J. Knight, I.C. Felli, R. Pierattelli, I. Bertini, L. Emsley, T. Herrmann, and G. Pintacuda Rapid measurement of pseudocontact shifts in metalloproteins by proton-detected solid-state NMR spectroscopy J. Am. Chem. Soc. 134 2012 14730 14733
22. S. Asami, and B. Reif Proton-detected solid-state NMR spectroscopy at aliphatic sites: application to crystalline systems Acc. Chem. Res. 46 2013 2089 2097
23. U.H. Durr, R. Soong, and A. Ramamoorthy When detergent meets bilayer: birth and coming of age of lipid bicelles Prog. Nucl. Magn. Reson. Spectrosc. 69 2013 1 22
24. A.E. Bennett, J.H. Ok, R.G. Griffin, and S. Vega Chemical-shift correlation spectroscopy in rotating solids - radio frequency-driven dipolar recoupling and longitudinal exchange J. Chem. Phys. 96 1992 8624 8627
25. A.E. Bennett, C.M. Rienstra, J.M. Griffiths, W.G. Zhen, P.T. Lansbury, and R.G. Griffin Homonuclear radio frequency-driven recoupling in rotating solids J. Chem. Phys. 108 1998 9463 9479 (Pubitemid 128571358)
26. A. Kumar, G. Wagner, R.R. Ernst, and K. Wuthrich Buildup rates of the nuclear Overhauser effect measured by two-dimensional proton magnetic-resonance spectroscopy - implications for studies of protein conformation J. Am. Chem. Soc. 103 1981 3654 3658
27. J. Raya, A. Bianco, J. Furrer, J.P. Briand, M. Piotto, and K. Elbayed Proton dipolar recoupling in resin-bound peptides under high-resolution magic angle spinning J. Magn. Reson. 157 2002 43 51
28. 1H MAS RFDR NMR of biological membranes J. Magn. Reson. 197 2009 77 86
29. 1H RFDR and NOESY NMR experiments on a membrane-bound antimicrobial peptide under magic angle spinning J. Phys. Chem. B 117 2013 6693 6700
30. 5-cytochrome P450 complex from NMR and mutagenesis data J. Biol. Chem. 288 2013 22080 22095
31. U.H. Durr, L. Waskell, and A. Ramamoorthy The cytochromes P450 and b5 and their reductases-promising targets for structural studies by advanced solid-state NMR spectroscopy Biochim. Biophys. Acta 1768 2007 3235 3259 (Pubitemid 350236080)
32. J.D. Xu, R. Soong, S.C. Im, L. Waskell, and A. Ramamoorthy Inept-based separated-local-field NMR spectroscopy: a unique approach to elucidate side-chain dynamics of membrane-associated proteins J. Am. Chem. Soc. 132 2010 9944 9947
33. K. Yamamoto, M. Gildenberg, S. Ahuja, S.C. Im, P. Pearcy, L. Waskell, and A. Ramamoorthy Probing the transmembrane structure and topology of microsomal cytochrome-P450 by solid-state NMR on temperature-resistant bicelles Sci. Rep. 3 2013 2556
34. 5 embedded in bicelles, revealing both structural and dynamical information J. Am. Chem. Soc. 132 2010 5779 5788
35. 5 by solid-state MAS NMR spectroscopy Angew. Chem. 47 2008 7864 7867
36. 5 observed by solid-state NMR spectroscopy Sci. Rep. 3 2013 2538
37. 5 J. Phys. Chem. B 117 2013 859 867
38. 15N chemical shift anisotropy tensors J. Phys. Chem. B 117 2013 13851 13860
39. 15N chemical shift anisotropy from a membrane-bound protein by NMR spectroscopy J. Phys. Chem. B 116 2012 7181 7189
40. 5 in a membrane environment Biomol. NMR Assign. 2013 10.1007/s12104-013-9528-9
41. L. Braunschweiler, and R.R. Ernst Coherence transfer by isotropic mixing - application to proton correlation spectroscopy J. Magn. Reson. 53 1983 521 528
42. S.P. Rucker, and A.J. Shaka Broad-band homonuclear cross polarization in 2D NMR using DIPSI-2 Mol. Phys. 68 1989 509 517
43. F. Delaglio, S. Grzesiek, G.W. Vuister, G. Zhu, J. Pfeifer, and A. Bax NMRpipe: a multidimensional spectral processing system based on unix pipes J. Biomol. NMR 6 1995 277 293
44. T.D. Goddard, D.G. Kneller, Sparky 3, University of California, San Francisco.
45. 13C dipolar recoupling under very fast magic angle spinning in solid-state nuclear magnetic resonance. Applications to distance measurements, spectral assignments, and high-throughput secondary-structure determination J. Chem. Phys. 114 2001 8473 8483 (Pubitemid 32512394)
46. H.M. Mcconnell Reaction rates by nuclear magnetic resonance J. Chem. Phys. 28 1958 430 431
47. M. Bloom, L.W. Reeves, and E.J. Wells Spin echoes and chemical exchange J. Chem. Phys. 42 1965 1615
48. A.D. Bain Chemical exchange in NMR Prog. Nucl. Magn. Reson. Spectrosc. 43 2003 63 103
49. D.M. Taylor, and A. Ramamoorthy Coherence transfer through homonuclear dipolar coupling in an unoriented two spin-1/2 solid-state system J. Mol. Struct. 602 2002 115 124 (Pubitemid 34062336)
50. D.M. Taylor, and A. Ramamoorthy Analysis of dipolar-coupling-mediated coherence transfer in a homonuclear two spin-1/2 solid-state system J. Magn. Reson. 141 1999 18 28 (Pubitemid 129608892)
51. S.V. Dvinskikh, K. Yamamoto, and A. Ramamoorthy Heteronuclear isotropic mixing separated local field NMR spectroscopy J. Chem. Phys. 125 2006 34507
52. 5 J. Am. Chem. Soc. 129 2007 6670 6671 (Pubitemid 46847487)
53. D.A. Kallick, M.R. Tessmer, C.R. Watts, and C.Y. Li The use of dodecylphosphocholine micelles in solution NMR J. Magn. Reson. Ser. B 109 1995 60 65