Functional connectivity-based parcellation of amygdala using self-organized mapping: A data driven approach

Human Brain Mapping

Volumn 35, Issue 4, 2014, Pages 1247-1260

  Mishra, Arabinda ^a,b   Rogers, Baxter P ^a,b   Chen, Li Min ^a,b   Gore, John C ^a,b,c,d  

^a VANDERBILT UNIVERSITY   (United States)

^b VANDERBILT UNIVERSITY   (United States)

^c VANDERBILT UNIVERSITY   (United States)

^d VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Connectivity based parcellation; Functional connectivity; Self organized mapping

Indexed keywords

ADULT; AMYGDALOID NUCLEUS; ARTICLE; ARTIFICIAL INTELLIGENCE; BRAIN MAPPING; FEMALE; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; MALE; MIDDLE AGED; NORMAL HUMAN; ORBITAL CORTEX; PRIORITY JOURNAL; SELF ORGANIZING MAP; STRUCTURE ACTIVITY RELATION; TEMPORAL CORTEX; TRACTOGRAPHY; YOUNG ADULT; ANATOMY AND HISTOLOGY; CLUSTER ANALYSIS; HEMISPHERIC DOMINANCE; NERVE TRACT; NUCLEAR MAGNETIC RESONANCE IMAGING; PHYSIOLOGY; PROCEDURES; REST; SIGNAL PROCESSING; THREE DIMENSIONAL IMAGING; VALIDATION STUDY;

ADULT; AMYGDALA; BRAIN MAPPING; CLUSTER ANALYSIS; FEMALE; FUNCTIONAL LATERALITY; HUMANS; IMAGING, THREE-DIMENSIONAL; MAGNETIC RESONANCE IMAGING; MALE; MIDDLE AGED; NEURAL PATHWAYS; REST; SIGNAL PROCESSING, COMPUTER-ASSISTED; YOUNG ADULT;

EID: 84896398357     PISSN: 10659471     EISSN: 10970193     Source Type: Journal    
DOI: 10.1002/hbm.22249     Document Type: Article

References (57)

1. Aggleton J, editor (2000):The Amygdala: A Functional Analysis. Oxford:Oxford Univ. Press.
2. Amunts K, Kedo O, Kindler M, Pieperhoff P, Mohlberg H, Shah NJ, Habel U, Schneider F, Zilles K (2005): Cytoarchitectonic mapping of the human amygdala, hippocampal region and entorhinal cortex: Intersubject variability and probability maps. Anat Embryol 210:343-352.
3. Bach DR, Behrens TE, Garrido L, Weiskopf N, Dolan RJ (2011): Deep and superficial amygdale nuclei projections revealed in vivo by probabilistic tractography. J Neurosci 31(2):618-623.
4. Ball T, Rahm B, Eickhoff SB, Schulze-Bonhage A, Speck O, Mutschler I (2007): Response properties of human amygdala subregions: Evidence based on functional MRI combined with probabilistic anatomical maps. PLoS One 2:e307.
5. Ball T, Derix J, Wentlandt J, Wieckhorst B, Speck O, Schulze-Bonhage A, Mutschler I (2009): Anatomical specificity of functional amygdala imaging of responses to stimuli with positive and negative emotional valence. J Neurosci Methods 180:57-70.
6. Bassett DS, Nelson BG, Mueller BA, Camchong J, Lim KO (2012): Altered resting state complexity in schizophrenia. Neuroimage 59(3):2196-2207.
7. Baxter MG, Murray EA (2002): The amygdala and reward. Nat Rev Neurosci 3:563-573.
8. Benedetti F, Radaelli D, Poletti S, Falini A, Cavallaro R, Dallaspezia S, Riccaboni R, Scotti G, Smeraldi E (2011): Emotional reactivity in chronic schizophrenia: Structural and functional brain correlates and the influence of adverse childhood experiences. Psychol Med 41(3):509-519.
9. Biswal BB, Yetkin FZ, Haughton VM, Hyde JS (1995): Functional connectivity in the motor cortex of resting human brain using echoplanar MRI. Magn Reson Med 34:537-541.
10. Boccardi M, Almici M, Bresciani L, Caroli A, Bonetti M, Monchieri S, Gennarelli M, Frisoni GB (2009): Clinical and medial temporal features in a family with mood disorders. Neurosci Lett 468(2):93-97.
11. Bonda E, Petrides M, Ostry D, Evans A (1996): Specific involvement of human parietal systems and the amygdala in the perception of biological motion. J Neurosci 16(11):3737-3744.
12. Chen LM, Mishra Arabinda, Newton AT, Morgan VL, Stringer EA, Rogers BP, Gore JC (2011): Fine-scale functional connectivity in somatosensory cortex revealed by high-resolution fMRI. Magn Reson Imaging 29(10):1330-1337.
13. Desikan RS, Segonne F, Fischl B, Quinn BT, Dickerson BC, Blacker D, Buckner RL, Dale AM, Maguire RP, Hyman BT, Albert MS, Killiany RJ (2006): An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage 31(3):968-980.
14. Freese JL, Amaral DG (2009): Neuroanatomy of the primate amygdala. In: Whalen PJ, Phelps EA, editors. The human amygdala. New York:Guilford. pp3-42.
15. Floresco SB, Ghods-Sharifi S (2007): Amygdala-prefrontal cortical circuitry regulates effort-based decision making. Cereb Cortex 17:251-260.
16. Gamer M, Zurowski B, Buchel C (2010): Different amygdala subregions mediate valence-related and attentional effects of oxytocin in humans. Proc Natl Acad Sci USA 107(20):9400-9406.
17. Garcia-Marti G, Aguilar EJ, Lull JJ, Marti-Bonmati L, Escarti MJ, Manjon JV, Moratal D, Robles M, Sanjuan J (2008): Schizophrenia with auditory hallucinations: A voxel-based morphometry study. Prog Neuropsychopharmacol Biol Psychiatry 32:72-80.
18. Goghari VM, Sponheim SR, MacDonald AW (2010): The functional neuroanatomy of symptom dimensions in schizophrenia: A qualitative and quantitative review of a persistent question. Neurosci Biobehav Rev 34(3):468-486.
19. Goutte C, Toft P, Rostrup E, Nielsen FA, Hansen LK (1999): On clustering fMRI time series. Neuroimage 9(3):298-310.
20. Heimer L, de Olmos JS, Alheid GF, Pearson J, Sakamoto N, Shinoda K, Marksteiner J, Switzer RC (1999):The human basal forebrain Part II The primate nervous system, Part III. Elsevier (ISBN: 978-0-444-50043-4), pp57-226.
21. Heskes T (2001): Self-organizing maps, vector quantization, and mixture modeling. IEEE Trans Neural Netw 12:1299-1305.
22. Kelley AE (2004): Ventral striatal control of appetitive motivation: Role in ingestive behavior and reward-related learning. Neurosci Biobehav Rev 27:765-776.
23. Kohonen T, Somervuo P (2002): How to make large self-organizing maps for nonvectorial data. Neural Netw 15(8-9):945-952.
24. Kohonen T (1997):Self-Organizing Maps, 2nd ed.Berlin:Springer-Verlag.
25. Kringelbach ML (2005): The orbitofrontal cortex: Linking reward to hedonic experience. Nat Rev Neurosci 6:691-702.
26. Lancaster JL, Woldorff MG (2000):Parsons LM, et al. Automated Talairach atlas labels for functional brain mapping. Hum Brain Mapp 10:120-131.
27. LeDoux J (2003): The emotional brain, fear, and the amygdala. Cell Mol Neurobiol 23:727-738.
28. Lemche E, Giampietro VP, Surguladze SA, Amaro EJ, Andrew CM, William SCR, Brammer MJ, Lawrence N, Maier MA, Russel TA, Simmons A, Ecker C, Joraschky P, Phillips ML (2006): Human attachment security is mediated by the amygdala: Evidence from combined fMRI and psychophysiological measures. Hum Brain Mapp 27:623-635.
29. Liao W, Chen H, Yang Q, Lei X (2008): Analysis of fMRI data using improved self-organized mapping and spatio-temporal metric hierarchical clustering. IEEE Trans Med Imaging 27(10):1472-1483.
30. Liemburg EJ, Van der ML, Swart M, Curcic-Blake B, Bruggeman R, Knegtering H, Aleman A (2012): Reduced connectivity in the self-processing network of schizophrenia patients with poor insight. PLoS One 7(8):e42707.
31. Mangiameli P, Chen SK, West D (1996): A comparison of SOM Neural network and hierarchical clustering methods. Eur J Oper Res 93:402-417.
32. Martin A, Wiggs CL, Weisberg J (1997): Modulation of human medial temporal lobe activity by form, meaning, and experience. Hippocampus 7:587-593.
33. Mishra Arabinda, Gatenby JC, Newton AT, Gore JC, Rogers BP (2010): Optimal clustering for connectivity-based parcellation of hippocampus. In:ISMRM, Stockholm, Sweden, May 1-7.
34. Morris JS, Friston KJ, Buchel C, Frith CD, Young AW, Calder AJ, Dolan RJ (1998): A neuromodulatory role for the human amygdala in processing emotional facial expression. Brain 121:47-57.
35. Murphy K, Birn RM, Handwerker DA, Jones TB, Bandettini PA (2009): The impact of global signal regression on resting state correlations: Are anti-correlated networks introduced?Neuroimage 44(3):893-905.
36. Ngan SC, Hu X (1999): Analysis of functional magnetic resonance imaging data using self-organizing mapping with spatial connectivity. Magn Reson Med 41:939-946.
37. Peltier SJ, Polk TA, Noll DC (2003): Detecting low-frequency functional connectivity in fMRI using self organizing map (SOM) algorithm. Hum Brain Mapp 20(4):220-226.
38. Phelps EA, Delgado MR, Nearing KI, LeDoux JE (2004): Extinction learning in humans: Role of amygdala and vmPFC. Neuron 43:897-905.
39. Phelps EA, LeDoux JE (2005): Contributions of the amygdala to emotion processing: From animal models to human behavior. Neuron 48(2):175-187.
40. Rissman J, Gazzaley A, D'Esposito M (2004): Measuring functional connectivity during distinct stages of cognitive task. Neuroimage 23(2):752-763.
41. Roy A K, Shehzad Z, Margulies DS, Kelly AMC, Uddin LQ, Gotimer K, Biswal BB, Castellanos FX, Milham MP (2009): Functional connectivity of the human amygdala using resting state fMRI. Neuroimage 45(2):614-626.
42. Rousseeuw PJ (1987): Silhouettes: A graphical aid to the interpretation and validation of cluster analysis. J Comput Appl Math 20:53-65.
43. Salvador R, Sarro S, Gomar JJ, Ortiz-Gil J, Vila F, Capdevila A, Bullmore E, McKenna PJ, Pomarol-Clotet E (2010): Overall brain connectivity maps show cortico-subcortical abnormalities in schizophrenia. Hum Brain Mapp 31(12):2003-2014.
44. Sander D, Grafman J, Zalla T (2003): The human amygdala: An evolved system for relevance detection. Rev Neurosci 14(4):303-316.
45. Saygin ZM, Osher DE, Augustinack J, Fischl B, Gabrieli JDE (2011): Connectivity-based segmentation of human amygdale nuclei using probabilistic tractography. Neuroimage 56:1353-1361.
46. Shehzad Z, Kelly AM, Reiss PT, Gee DG, Gotimer K, Uddin LQ, Lee SH, Margulies DS, Roy AK, Biswal BB, Petkova E, Castellanos FX, Milham MP (2009): The resting brain: Unconstrained yet reliable. Cereb Cortex 19:2209-29.
47. Shin LM, Wright CI, Cannistraro PA, Wedig MM, McMullin K, Martis B, Macklin ML, Lasko NB, Cavanagh SR, Krangel TS, Orr SP, Pitman RK, Whalen PJ, Rauch SL (2005): A functional magnetic resonance imaging study of amygdala and medial prefrontal cortex responses to overtly presented fearful faces in posttraumatic stress disorder. Arch Gen Psychiatry 62:273-281.
48. Solano-Castiella E, Anwander A, Lohmann G, Weiss M, Docherty C, Geyer S, Reimer E, Friederici AD, Turner R (2010): Diffusion tensor imaging segments the human amygdala in vivo. Neuroimage 49:2958-2965.
49. Solano-Castiella E, Schafer A, Reimer E, Turke E, Proger T, Lohmann G, Trampel R, Turner R (2011): Parcellation of human amygdale in vivo using ultra high field structural MRI. Neuroimage 58:741-748.
50. Swanson LW, Petrovich GD (1998): What is the amygdala?Trends Neurosci 21:323-331.
51. Vizueta N, Patric CJ, Jiang Y, Thomas Y, He S (2012): Dispositional fear, negative affectivity, and neuroimaging response to visually suppressed emotional faces. Neuroimage 59(1):761-771.
52. Weeda WD, Waldrop LJ, Grasman RP, Gaal S van, Huizenga HM (2011): Functional connectivity analysis of fMRI data using parameterized regions-of-interest. Neuroimage 54(1):410-416.
53. Weissenbacher A, Kasess C, Gerstl F, Lanzenberger R, Moser E, Windischberger C (2009): Correlations and anticorrelations in resting-state functional connectivity MRI: A quantitative comparison of preprocessing strategies. Neuroimage 47(4):1408-1416.
54. Weng SJ, Wiggins JL, Peltier SJ, Carrasco M, Risi S, Lord C, Monk CS (2010): Alterations of resting state functional connectivity in the default network in adolescents with autism spectrum disorders. Brain Res 1313:202-14.
55. Wiggins JL, Peltier SJ, Ashinoff S, Weng S, Carrasco M, Welsh RC, Lord C, Monk CS (2011): Using a self-organising map algorithm to detect age-related changes in functional connectivity during rest in autism spectrum disorders. Brain Res 1380:187-197.
56. Wismuller A, Meyer-Base A, Lange O, Auer D, Maximilian FR, Sumners D (2004): Model-free functional MRI analysis based on unsupervised clustering. J Biomed Inform 37:10-18.
57. Wu X, Li R, Fleisher AS, Reiman EM, Guan X, Zhang Y, Chen K, Yao L (2011): Altered default mode network connectivity in Alzheimer's disease-A resting functional MRI and Bayesian network study. Hum Brain Mapp 32(11):1868-1881.