-
1
-
-
40549120596
-
The RAST server: Rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, et al,. (2008) The RAST server: rapid annotations using subsystems technology. BMC Genomics, 9, 75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
-
3
-
-
49249153885
-
Biosynthesis of the cuticular hydrocarbons of the termite Zootermopsis angusticollis (Hagen). Incorporation of propionate into dimethylalkanes
-
Blomquist GJ, Howard RW, McDaniel CA, (1979) Biosynthesis of the cuticular hydrocarbons of the termite Zootermopsis angusticollis (Hagen). Incorporation of propionate into dimethylalkanes. Insect Biochemistry, 9, 371-374.
-
(1979)
Insect Biochemistry
, vol.9
, pp. 371-374
-
-
Blomquist, G.J.1
Howard, R.W.2
McDaniel, C.A.3
-
4
-
-
0037313265
-
Hydrogen-dependent oxygen reduction by homoacetogenic bacteria isolated from termite guts
-
Boga HI, Brune A, (2003) Hydrogen-dependent oxygen reduction by homoacetogenic bacteria isolated from termite guts. Applied and Environmental Microbiology, 69, 779-786.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 779-786
-
-
Boga, H.I.1
Brune, A.2
-
5
-
-
0141704076
-
Sporomusa aerivorans sp nov, an oxygen-reducing homoacetogenic bacterium from the gut of a soil-feeding termite
-
Boga HI, Ludwig W, Brune A, (2003) Sporomusa aerivorans sp nov, an oxygen-reducing homoacetogenic bacterium from the gut of a soil-feeding termite. International Journal of Systematic and Evolutionary Microbiology, 53, 1397-1404.
-
(2003)
International Journal of Systematic and Evolutionary Microbiology
, vol.53
, pp. 1397-1404
-
-
Boga, H.I.1
Ludwig, W.2
Brune, A.3
-
6
-
-
0026616323
-
Genesis of acetate and methane by gut bacteria of nutritionally diverse termites
-
Brauman A, Kane MD, Labat M, Breznak JA, (1992) Genesis of acetate and methane by gut bacteria of nutritionally diverse termites. Science, 257, 1384-1387.
-
(1992)
Science
, vol.257
, pp. 1384-1387
-
-
Brauman, A.1
Kane, M.D.2
Labat, M.3
Breznak, J.A.4
-
7
-
-
0028036129
-
Role of microorganisms in the digestion of lignocellulose by termites
-
Breznak JA, Brune A, (1994) Role of microorganisms in the digestion of lignocellulose by termites. Annual Review of Entomology, 39, 453-487.
-
(1994)
Annual Review of Entomology
, vol.39
, pp. 453-487
-
-
Breznak, J.A.1
Brune, A.2
-
9
-
-
0031908639
-
Termite guts: The world's smallest bioreactors
-
Brune A, (1998a) Termite guts: the world's smallest bioreactors. Trends in Biotechnology, 16, 16-21.
-
(1998)
Trends in Biotechnology
, vol.16
, pp. 16-21
-
-
Brune, A.1
-
10
-
-
0041721909
-
Microbial degradation of aromatic compounds: Aerobic versus anaerobic processes
-
Brune A, (1998b) Microbial degradation of aromatic compounds: aerobic versus anaerobic processes. Mitteilungen der Deutschen Bodenkundlichen Gesellschaft, 87, 65-78.
-
(1998)
Mitteilungen der Deutschen Bodenkundlichen Gesellschaft
, vol.87
, pp. 65-78
-
-
Brune, A.1
-
11
-
-
0029037054
-
Roles of oxygen and the intestinal microflora in the metabolism of lignin-derived phenylpropanoids and other monoaromatic compounds by termites
-
Brune A, Miambi E, Breznak JA, (1995a) Roles of oxygen and the intestinal microflora in the metabolism of lignin-derived phenylpropanoids and other monoaromatic compounds by termites. Applied and Environmental Microbiology, 61, 2688-2695.
-
(1995)
Applied and Environmental Microbiology
, vol.61
, pp. 2688-2695
-
-
Brune, A.1
Miambi, E.2
Breznak, J.A.3
-
12
-
-
0029039266
-
The termite gut microflora as an oxygen sink: Microelectrode determination of oxygen and pH gradients in guts of lower and higher termites
-
Brune A, Emerson D, Breznak JA, (1995b) The termite gut microflora as an oxygen sink: microelectrode determination of oxygen and pH gradients in guts of lower and higher termites. Applied and Environmental Microbiology, 61, 2681-2687.
-
(1995)
Applied and Environmental Microbiology
, vol.61
, pp. 2681-2687
-
-
Brune, A.1
Emerson, D.2
Breznak, J.A.3
-
13
-
-
0031767875
-
Enzymatic cleavage of aromatic rings: Mechanistic aspects of the catechol dioxygenases and later enzymes of bacterial oxidative cleavage pathways
-
Bugg TDH, Winfield CJ, (1998) Enzymatic cleavage of aromatic rings: mechanistic aspects of the catechol dioxygenases and later enzymes of bacterial oxidative cleavage pathways. Natural Product Reports, 15, 513-530.
-
(1998)
Natural Product Reports
, vol.15
, pp. 513-530
-
-
Bugg, T.D.H.1
Winfield, C.J.2
-
15
-
-
84860490976
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
Caspi R, Altman T, Dreher K, et al,. (2012) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Research, 40, D742-D753.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Caspi, R.1
Altman, T.2
Dreher, K.3
-
16
-
-
0010540674
-
Symbiosis among animals with special reference to termites and their intestinal flagellates
-
Cleveland LR, (1926) Symbiosis among animals with special reference to termites and their intestinal flagellates. The Quarterly Review of Biology, 1, 51-60.
-
(1926)
The Quarterly Review of Biology
, vol.1
, pp. 51-60
-
-
Cleveland, L.R.1
-
17
-
-
0002980725
-
14C-lignin degradation by three Australian termite species
-
14C-lignin degradation by three Australian termite species. Wood Science and Technology, 21, 11-25.
-
(1987)
Wood Science and Technology
, vol.21
, pp. 11-25
-
-
Cookson, L.J.1
-
18
-
-
77957000044
-
Phenol-oxidizing laccases from the termite gut
-
Coy MR, Salem TZ, Denton JS, (2010) Phenol-oxidizing laccases from the termite gut. Insect Biochemistry and Molecular Biology, 40, 723-732.
-
(2010)
Insect Biochemistry and Molecular Biology
, vol.40
, pp. 723-732
-
-
Coy, M.R.1
Salem, T.Z.2
Denton, J.S.3
-
19
-
-
75549090212
-
The comprehensive microbial resource
-
Davidsen T, Beck E, Ganapathy A, et al,. (2010) The comprehensive microbial resource. Nucleic Acids Research, 38, D340-D345.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Davidsen, T.1
Beck, E.2
Ganapathy, A.3
-
20
-
-
0028943123
-
Identification of functional residues in a 2-hydroxymuconic semialdehyde hydrolase
-
Díaz E, Timmis KN, (1995) Identification of functional residues in a 2-hydroxymuconic semialdehyde hydrolase. Journal of Biological Chemistry, 270, 6403-6411.
-
(1995)
Journal of Biological Chemistry
, vol.270
, pp. 6403-6411
-
-
Díaz, E.1
Timmis, K.N.2
-
21
-
-
0029846961
-
Evolutionary relationships among extradiol dioxygenases
-
Eltis LD, Bolin JT, (1996) Evolutionary relationships among extradiol dioxygenases. Journal of Bacteriology, 178, 5930-5937.
-
(1996)
Journal of Bacteriology
, vol.178
, pp. 5930-5937
-
-
Eltis, L.D.1
Bolin, J.T.2
-
22
-
-
80054757000
-
Microbial degradation of aromatic compounds - From one strategy to four
-
Fuchs G, Boll M, Heider J, (2011) Microbial degradation of aromatic compounds-from one strategy to four. Nature Reviews Microbiology, 9, 803-816.
-
(2011)
Nature Reviews Microbiology
, vol.9
, pp. 803-816
-
-
Fuchs, G.1
Boll, M.2
Heider, J.3
-
23
-
-
0027223958
-
Gene components responsible for discrete substrate specificity in the metabolism of biphenyl (bph operon) and toluene (tod operon)
-
Furukawa K, Hirose J, Suyama A, Zaiki T, Hayashida S, (1993) Gene components responsible for discrete substrate specificity in the metabolism of biphenyl (bph operon) and toluene (tod operon). Journal of Bacteriology, 175, 5224-5232.
-
(1993)
Journal of Bacteriology
, vol.175
, pp. 5224-5232
-
-
Furukawa, K.1
Hirose, J.2
Suyama, A.3
Zaiki, T.4
Hayashida, S.5
-
24
-
-
75549088021
-
The NCBI BioSystems database
-
Geer LY, Marchler-Bauer A, Geer RC, et al,. (2010) The NCBI BioSystems database. Nucleic Acids Research, 38, D492-D496.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Geer, L.Y.1
Marchler-Bauer, A.2
Geer, R.C.3
-
25
-
-
0036407322
-
Metabolic diversity in aromatic compound utilization by anaerobic microbes
-
Gibson J, Harwood CS, (2002) Metabolic diversity in aromatic compound utilization by anaerobic microbes. Annual Review of Microbiology, 56, 345-369.
-
(2002)
Annual Review of Microbiology
, vol.56
, pp. 345-369
-
-
Gibson, J.1
Harwood, C.S.2
-
27
-
-
1642319541
-
Description of Treponema azotonutricium sp nov and Treponema primitia sp nov, the first spirochetes isolated from termite guts
-
Graber JR, Leadbetter JR, Breznak JA, (2004) Description of Treponema azotonutricium sp nov and Treponema primitia sp nov, the first spirochetes isolated from termite guts. Applied and Environmental Microbiology, 70, 1315-1320.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 1315-1320
-
-
Graber, J.R.1
Leadbetter, J.R.2
Breznak, J.A.3
-
28
-
-
0025318026
-
The meta-cleavage operon of TOL degradative plasmid pWW0 comprises 13 genes
-
Harayama S, Rekik M, (1990) The meta-cleavage operon of TOL degradative plasmid pWW0 comprises 13 genes. Molecular and General Genetics, 221, 113-120.
-
(1990)
Molecular and General Genetics
, vol.221
, pp. 113-120
-
-
Harayama, S.1
Rekik, M.2
-
29
-
-
0023141066
-
Roles of the divergent branches of the meta-cleavage pathway in the degradation of benzoate and substituted benzoates
-
Harayama S, Mermod N, Rekik M, Lehrbach PR, Timmis KN, (1987) Roles of the divergent branches of the meta-cleavage pathway in the degradation of benzoate and substituted benzoates. Journal of Bacteriology, 169, 558-564.
-
(1987)
Journal of Bacteriology
, vol.169
, pp. 558-564
-
-
Harayama, S.1
Mermod, N.2
Rekik, M.3
Lehrbach, P.R.4
Timmis, K.N.5
-
30
-
-
0034285515
-
Alpha/beta-hydrolase fold enzymes: Structures, functions and mechanisms
-
Holmquist M, (2000) Alpha/beta-hydrolase fold enzymes: structures, functions and mechanisms. Current Protein & Peptide Science, 1, 209-235.
-
(2000)
Current Protein & Peptide Science
, vol.1
, pp. 209-235
-
-
Holmquist, M.1
-
31
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F, (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
32
-
-
0033797755
-
Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: Evidence for their involvement in catechol dioxygenase reactivation
-
Hugo N, Meyer C, Armengaud J, Gaillard J, Timmis KN, Jouanneau Y, (2000) Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: evidence for their involvement in catechol dioxygenase reactivation. Journal of Bacteriology, 182, 5580-5585.
-
(2000)
Journal of Bacteriology
, vol.182
, pp. 5580-5585
-
-
Hugo, N.1
Meyer, C.2
Armengaud, J.3
Gaillard, J.4
Timmis, K.N.5
Jouanneau, Y.6
-
33
-
-
0037630489
-
Mutualistic intestinal protozoa
-
(eds Hunter S. & Lwoff A.), Academic Press, New York.
-
Hungate R, (1955) Mutualistic intestinal protozoa. In: Biochemistry and Physiology of Protozoa (eds, Hunter S, &, Lwoff A,), pp. 159-199. Academic Press, New York.
-
(1955)
Biochemistry and Physiology of Protozoa
, pp. 159-199
-
-
Hungate, R.1
-
34
-
-
34250182775
-
Structure and mechanism of HpcG, a hydratase in the homoprotocatechuate degradation pathway of Escherichia coli
-
Izumi A, Rea D, Adachi T, et al,. (2007) Structure and mechanism of HpcG, a hydratase in the homoprotocatechuate degradation pathway of Escherichia coli. Journal of Molecular Biology, 370, 899-911.
-
(2007)
Journal of Molecular Biology
, vol.370
, pp. 899-911
-
-
Izumi, A.1
Rea, D.2
Adachi, T.3
-
35
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S, (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Research, 28, 27-30.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
36
-
-
0032718993
-
Influence of gut alkalinity and oxygen status on mobilization and size-class distribution of humic acids in the hindgut of soil-feeding termites
-
Kappler A, Brune A, (1999) Influence of gut alkalinity and oxygen status on mobilization and size-class distribution of humic acids in the hindgut of soil-feeding termites. Applied Soil Ecology, 13, 219-229.
-
(1999)
Applied Soil Ecology
, vol.13
, pp. 219-229
-
-
Kappler, A.1
Brune, A.2
-
37
-
-
0036159376
-
Dynamics of redox potential and changes in redox state of iron and humic acids during gut passage in soil-feeding termites (Cubitermes spp.)
-
Kappler A, Brune A, (2002) Dynamics of redox potential and changes in redox state of iron and humic acids during gut passage in soil-feeding termites (Cubitermes spp.). Soil Biology & Biochemistry, 34, 221-227.
-
(2002)
Soil Biology & Biochemistry
, vol.34
, pp. 221-227
-
-
Kappler, A.1
Brune, A.2
-
38
-
-
79958246963
-
In situ lignocellulosic unlocking mechanism for carbohydrate hydrolysis in termites: Crucial lignin modification
-
Ke J, Laskar DD, Singh D, Chen S, (2011) In situ lignocellulosic unlocking mechanism for carbohydrate hydrolysis in termites: crucial lignin modification. Biotechnology for Biofuels, 4, 17.
-
(2011)
Biotechnology for Biofuels
, vol.4
, pp. 17
-
-
Ke, J.1
Laskar, D.D.2
Singh, D.3
Chen, S.4
-
39
-
-
84873651530
-
Tetramethylammonium hydroxide (TMAH) thermochemolysis for probing in situ softwood lignin modification in each gut segment of the termite
-
Ke J, Laskar DD, Chen S, (2013) Tetramethylammonium hydroxide (TMAH) thermochemolysis for probing in situ softwood lignin modification in each gut segment of the termite. Journal of Agricultural and Food Chemistry, 61, 1299-1308.
-
(2013)
Journal of Agricultural and Food Chemistry
, vol.61
, pp. 1299-1308
-
-
Ke, J.1
Laskar, D.D.2
Chen, S.3
-
40
-
-
33750722140
-
A novel meta-cleavage product hydrolase from Flavobacterium sp ATCC27551
-
Khajamohiddin S, Babu PS, Chakka D, et al,. (2006) A novel meta-cleavage product hydrolase from Flavobacterium sp ATCC27551. Biochemical and Biophysical Research Communications, 351, 675-681.
-
(2006)
Biochemical and Biophysical Research Communications
, vol.351
, pp. 675-681
-
-
Khajamohiddin, S.1
Babu, P.S.2
Chakka, D.3
-
41
-
-
38949213307
-
Biodegradation of aromatic compounds: An overview of meta-fission product hydrolases
-
Khajamohiddin S, Repalle ER, Pinjari AB, Merrick M, Siddavattam D, (2008) Biodegradation of aromatic compounds: an overview of meta-fission product hydrolases. Critical Reviews in Microbiology, 34, 13-31.
-
(2008)
Critical Reviews in Microbiology
, vol.34
, pp. 13-31
-
-
Khajamohiddin, S.1
Repalle, E.R.2
Pinjari, A.B.3
Merrick, M.4
Siddavattam, D.5
-
42
-
-
10644234814
-
Functional characterization and molecular modeling of methylcatechol 2,3-dioxygenase from o-xylene-degrading Rhodococcus sp strain DK17
-
Kim D, Chae JC, Jang JY, et al,. (2005) Functional characterization and molecular modeling of methylcatechol 2,3-dioxygenase from o-xylene-degrading Rhodococcus sp strain DK17. Biochemical and Biophysical Research Communications, 326, 880-886.
-
(2005)
Biochemical and Biophysical Research Communications
, vol.326
, pp. 880-886
-
-
Kim, D.1
Chae, J.C.2
Jang, J.Y.3
-
43
-
-
0033556265
-
An archetypical extradiol-cleaving catecholic dioxygenase: The crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Pseudomonas putida mt-2
-
Kita A, Kita S, Fujisawa I, et al,. (1999) An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Pseudomonas putida mt-2. Structure, 7, 25-34.
-
(1999)
Structure
, vol.7
, pp. 25-34
-
-
Kita, A.1
Kita, S.2
Fujisawa, I.3
-
44
-
-
0028988356
-
Overexpression of Pseudomonas putida catechol 2,3-dioxygenase with high specific activity by genetically engineered Escherichia coli
-
Kobayashi T, Ishida T, Horiike K, et al,. (1995) Overexpression of Pseudomonas putida catechol 2,3-dioxygenase with high specific activity by genetically engineered Escherichia coli. Journal of Biochemistry, 117, 614-622.
-
(1995)
Journal of Biochemistry
, vol.117
, pp. 614-622
-
-
Kobayashi, T.1
Ishida, T.2
Horiike, K.3
-
45
-
-
84864076952
-
High-resolution analysis of gut environment and bacterial microbiota reveals functional compartmentation of the gut in wood-feeding higher termites (Nasutitermes spp.)
-
Köhler T, Dietrich C, Scheffrahn RH, Brune A, (2012) High-resolution analysis of gut environment and bacterial microbiota reveals functional compartmentation of the gut in wood-feeding higher termites (Nasutitermes spp.). Applied and Environmental Microbiology, 78, 4691-4701.
-
(2012)
Applied and Environmental Microbiology
, vol.78
, pp. 4691-4701
-
-
Köhler, T.1
Dietrich, C.2
Scheffrahn, R.H.3
Brune, A.4
-
46
-
-
0028303767
-
Degradation of lignin monomers by the hindgut flora of xylophagous termites
-
Kuhnigk T, Borst EM, Ritter A, et al,. (1994) Degradation of lignin monomers by the hindgut flora of xylophagous termites. Systematic and Applied Microbiology, 17, 76-85.
-
(1994)
Systematic and Applied Microbiology
, vol.17
, pp. 76-85
-
-
Kuhnigk, T.1
Borst, E.M.2
Ritter, A.3
-
47
-
-
0029782668
-
Physiological ecology of Methanobrevibacter cuticularis sp nov and Methanobrevibacter curvatus sp nov, isolated from the hindgut of the termite Reticulitermes flavipes
-
Leadbetter JR, Breznak JA, (1996) Physiological ecology of Methanobrevibacter cuticularis sp nov and Methanobrevibacter curvatus sp nov, isolated from the hindgut of the termite Reticulitermes flavipes. Applied and Environmental Microbiology, 62, 3620-3631.
-
(1996)
Applied and Environmental Microbiology
, vol.62
, pp. 3620-3631
-
-
Leadbetter, J.R.1
Breznak, J.A.2
-
49
-
-
46049111619
-
+ and coenzyme A in an acetaldehyde dehydrogenase involved in bacterial degradation of aromatic compounds
-
+ and coenzyme A in an acetaldehyde dehydrogenase involved in bacterial degradation of aromatic compounds. Biochemistry, 47, 6870-6882.
-
(2008)
Biochemistry
, vol.47
, pp. 6870-6882
-
-
Lei, Y.1
Pawelek, P.D.2
Powlowski, J.3
-
51
-
-
0033171506
-
Phylogenetic diversity of termite gut spirochaetes
-
Lilburn TG, Schmidt TM, Brenak JA, (1999) Phylogenetic diversity of termite gut spirochaetes. Environmental Microbiology, 1, 331-345.
-
(1999)
Environmental Microbiology
, vol.1
, pp. 331-345
-
-
Lilburn, T.G.1
Schmidt, T.M.2
Brenak, J.A.3
-
52
-
-
0035968010
-
Nitrogen fixation by symbiotic and free-living spirochetes
-
Lilburn TG, Kim KS, Ostrom NE, Byzek KR, Leadbetter JR, Breznak JA, (2001) Nitrogen fixation by symbiotic and free-living spirochetes. Science, 292, 2495-2498.
-
(2001)
Science
, vol.292
, pp. 2495-2498
-
-
Lilburn, T.G.1
Kim, K.S.2
Ostrom, N.E.3
Byzek, K.R.4
Leadbetter, J.R.5
Breznak, J.A.6
-
53
-
-
0034437920
-
Anaerobic benzene degradation
-
Lovley DR, (2000) Anaerobic benzene degradation. Biodegradation, 11, 107-116.
-
(2000)
Biodegradation
, vol.11
, pp. 107-116
-
-
Lovley, D.R.1
-
54
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig W, Strunk O, Westram R, et al,. (2004) ARB: a software environment for sequence data. Nucleic Acids Research, 32, 1363-1371.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
-
55
-
-
33644873697
-
The integrated microbial genomes (IMG) system
-
Markowitz VM, Korzeniewski F, Palaniappan K, et al,. (2006) The integrated microbial genomes (IMG) system. Nucleic Acids Research, 34, D344-D348.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Markowitz, V.M.1
Korzeniewski, F.2
Palaniappan, K.3
-
56
-
-
0011126167
-
14C]-acetate by two subterranean termites, Reticulitermes flavipes and Coptotermes formosanus
-
14C]-acetate by two subterranean termites, Reticulitermes flavipes and Coptotermes formosanus. Insect Biochemistry, 12, 193-199.
-
(1982)
Insect Biochemistry
, vol.12
, pp. 193-199
-
-
Mauldin, J.K.1
-
57
-
-
27944453600
-
Virtual Footprint and PRODORIC: An integrative framework for regulon prediction in prokaryotes
-
Münch R, Hiller K, Grote A, et al,. (2005) Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes. Bioinformatics, 21, 4187-4189.
-
(2005)
Bioinformatics
, vol.21
, pp. 4187-4189
-
-
Münch, R.1
Hiller, K.2
Grote, A.3
-
58
-
-
0035933281
-
Crystal structure of 2-hydroxyl-6-oxo-6-phenylhexa-2,4-dienoic acid (HPDA) hydrolase (BphD enzyme) from the Rhodococcus sp strain RHA1 of the PCB degradation pathway
-
Nandhagopal N, Yamada A, Hatta T, et al,. (2001) Crystal structure of 2-hydroxyl-6-oxo-6-phenylhexa-2,4-dienoic acid (HPDA) hydrolase (BphD enzyme) from the Rhodococcus sp strain RHA1 of the PCB degradation pathway. Journal of Molecular Biology, 309, 1139-1151.
-
(2001)
Journal of Molecular Biology
, vol.309
, pp. 1139-1151
-
-
Nandhagopal, N.1
Yamada, A.2
Hatta, T.3
-
60
-
-
70449403422
-
Mobyle: A new full web bioinformatics framework
-
Néron B, Ménager H, Maufrais C, et al,. (2009) Mobyle: a new full web bioinformatics framework. Bioinformatics, 25, 3005-3011.
-
(2009)
Bioinformatics
, vol.25
, pp. 3005-3011
-
-
Néron, B.1
Ménager, H.2
Maufrais, C.3
-
61
-
-
0020525735
-
Volatile fatty acid production by the hindgut microbiota of xylophagous termites
-
Odelson DA, Breznak JA, (1983) Volatile fatty acid production by the hindgut microbiota of xylophagous termites. Applied and Environmental Microbiology, 45, 1602-1613.
-
(1983)
Applied and Environmental Microbiology
, vol.45
, pp. 1602-1613
-
-
Odelson, D.A.1
Breznak, J.A.2
-
62
-
-
0021905364
-
Nutrition and growth characteristics of Trichomitopsis termopsidis, a cellulolytic protozoan from termites
-
Odelson DA, Breznak JA, (1985a) Nutrition and growth characteristics of Trichomitopsis termopsidis, a cellulolytic protozoan from termites. Applied and Environmental Microbiology, 49, 614-621.
-
(1985)
Applied and Environmental Microbiology
, vol.49
, pp. 614-621
-
-
Odelson, D.A.1
Breznak, J.A.2
-
63
-
-
0021978383
-
Cellulase and other polymer-hydrolyzing activities of Trichomitopsis termopsidis, a symbiotic protozoan from termites
-
Odelson DA, Breznak JA, (1985b) Cellulase and other polymer-hydrolyzing activities of Trichomitopsis termopsidis, a symbiotic protozoan from termites. Applied and Environmental Microbiology, 49, 622-626.
-
(1985)
Applied and Environmental Microbiology
, vol.49
, pp. 622-626
-
-
Odelson, D.A.1
Breznak, J.A.2
-
64
-
-
0030028448
-
Phylogeny of not-yet-cultured spirochetes from termite guts
-
Paster BJ, Dewhirst FE, Cooke SM, Fussing V, Poulsen LK, Breznak JA, (1996) Phylogeny of not-yet-cultured spirochetes from termite guts. Applied and Environmental Microbiology, 62, 347-352.
-
(1996)
Applied and Environmental Microbiology
, vol.62
, pp. 347-352
-
-
Paster, B.J.1
Dewhirst, F.E.2
Cooke, S.M.3
Fussing, V.4
Poulsen, L.K.5
Breznak, J.A.6
-
65
-
-
0025289891
-
Lignin-solubilizing ability of actinomycetes isolated from termite (Termitidae) gut
-
Pasti MB, Pometto AL III, Nuti MP, Crawford DL, (1990) Lignin-solubilizing ability of actinomycetes isolated from termite (Termitidae) gut. Applied and Environmental Microbiology, 56, 2213-2218.
-
(1990)
Applied and Environmental Microbiology
, vol.56
, pp. 2213-2218
-
-
Pasti, M.B.1
Pometto III, A.L.2
Nuti, M.P.3
Crawford, D.L.4
-
66
-
-
34948874234
-
Hydrogen is the central free intermediate during lignocellulose degradation by termite gut symbionts
-
Pester M, Brune A, (2007) Hydrogen is the central free intermediate during lignocellulose degradation by termite gut symbionts. The ISME Journal, 1, 551-565.
-
(2007)
The ISME Journal
, vol.1
, pp. 551-565
-
-
Pester, M.1
Brune, A.2
-
67
-
-
0027308193
-
In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin: A bacterial strategy to expand the substrate specificity of aromatic degradative pathways
-
Polissi A, Harayama S, (1993) In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin: a bacterial strategy to expand the substrate specificity of aromatic degradative pathways. The EMBO Journal, 12, 3339-3347.
-
(1993)
The EMBO Journal
, vol.12
, pp. 3339-3347
-
-
Polissi, A.1
Harayama, S.2
-
68
-
-
84858077472
-
The Pfam protein families database
-
Punta M, Coggill PC, Eberhardt RY, et al,. (2012) The Pfam protein families database. Nucleic Acids Research, 40, D290-D301.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
-
69
-
-
84874660400
-
Comparative metatranscriptomic signatures of wood and paper feeding in the gut of the termite Reticulitermes flavipes (Isoptera: Rhinotermitidae)
-
Raychoudhury R, Sen R, Cai Y, et al,. (2013) Comparative metatranscriptomic signatures of wood and paper feeding in the gut of the termite Reticulitermes flavipes (Isoptera: Rhinotermitidae). Insect Molecular Biology, 22, 155-171.
-
(2013)
Insect Molecular Biology
, vol.22
, pp. 155-171
-
-
Raychoudhury, R.1
Sen, R.2
Cai, Y.3
-
70
-
-
33747064113
-
Expression, purification and preliminary crystallographic analysis of 2,4-dihydroxy-hepta-2-ene-1,7-dioate aldolase (HpcH) from Escherichia coli C
-
Rea D, Fülöp V, Bugg TDH, Roper DI, (2005) Expression, purification and preliminary crystallographic analysis of 2,4-dihydroxy-hepta-2- ene-1,7-dioate aldolase (HpcH) from Escherichia coli C. Acta Crystallographica Section F, 61, 821-824.
-
(2005)
Acta Crystallographica Section F
, vol.61
, pp. 821-824
-
-
Rea, D.1
Fülöp, V.2
Bugg, T.D.H.3
Roper, D.I.4
-
71
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
72
-
-
79959616345
-
RNA-seq reveals cooperative metabolic interactions between two termite-gut spirochete species in co-culture
-
Rosenthal AZ, Matson EG, Eldar A, Leadbetter JR, (2011) RNA-seq reveals cooperative metabolic interactions between two termite-gut spirochete species in co-culture. The ISME Journal, 5, 1133-1142.
-
(2011)
The ISME Journal
, vol.5
, pp. 1133-1142
-
-
Rosenthal, A.Z.1
Matson, E.G.2
Eldar, A.3
Leadbetter, J.R.4
-
73
-
-
77954168289
-
Potential of termite-based biomass pre-treatment strategies for use in bioethanol production
-
Scharf ME, Boucias DG, (2010) Potential of termite-based biomass pre-treatment strategies for use in bioethanol production. Insect Science, 17, 166-174.
-
(2010)
Insect Science
, vol.17
, pp. 166-174
-
-
Scharf, M.E.1
Boucias, D.G.2
-
74
-
-
57149133968
-
Termite digestomes as sources for novel lignocellulases
-
Scharf ME, Tartar A, (2008) Termite digestomes as sources for novel lignocellulases. Biofuels, Bioproducts and Biorefining, 2, 540-552.
-
(2008)
Biofuels, Bioproducts and Biorefining
, vol.2
, pp. 540-552
-
-
Scharf, M.E.1
Tartar, A.2
-
75
-
-
84871747940
-
Lignin-associated metagene expression in a lignocellulose-digesting termite
-
Sethi A, Slack JM, Kovaleva ES, Buchman GW, Scharf ME, (2013) Lignin-associated metagene expression in a lignocellulose-digesting termite. Insect Biochemistry and Molecular Biology, 43, 91-101.
-
(2013)
Insect Biochemistry and Molecular Biology
, vol.43
, pp. 91-101
-
-
Sethi, A.1
Slack, J.M.2
Kovaleva, E.S.3
Buchman, G.W.4
Scharf, M.E.5
-
76
-
-
0032925305
-
Purification, characterization, and primary structure of a monofunctional catalase from Methanosarcina barkeri
-
Shima S, Netrusov A, Sordel M, Wicke M, Hartmann GC, Thauer RK, (1999) Purification, characterization, and primary structure of a monofunctional catalase from Methanosarcina barkeri. Archives of Microbiology, 171, 317-323.
-
(1999)
Archives of Microbiology
, vol.171
, pp. 317-323
-
-
Shima, S.1
Netrusov, A.2
Sordel, M.3
Wicke, M.4
Hartmann, G.C.5
Thauer, R.K.6
-
77
-
-
0035406386
-
Characterization of a heme-dependent catalase from Methanobrevibacter arboriphilus
-
Shima S, Sordel-Klippert M, Brioukhanov A, Netrusov A, Linder D, Thauer RK, (2001) Characterization of a heme-dependent catalase from Methanobrevibacter arboriphilus. Applied and Environmental Microbiology, 67, 3041-3045.
-
(2001)
Applied and Environmental Microbiology
, vol.67
, pp. 3041-3045
-
-
Shima, S.1
Sordel-Klippert, M.2
Brioukhanov, A.3
Netrusov, A.4
Linder, D.5
Thauer, R.K.6
-
78
-
-
33745216477
-
The role of residue Thr249 in modulating the catalytic efficiency and substrate specificity of catechol-2,3-dioxygenase from Pseudomonas stutzeri OX1
-
Siani L, Viggiani A, Notomista E, Pezzella A, Di Donato A, (2006) The role of residue Thr249 in modulating the catalytic efficiency and substrate specificity of catechol-2,3-dioxygenase from Pseudomonas stutzeri OX1. FEBS Journal, 273, 2963-2976.
-
(2006)
FEBS Journal
, vol.273
, pp. 2963-2976
-
-
Siani, L.1
Viggiani, A.2
Notomista, E.3
Pezzella, A.4
Di Donato, A.5
-
79
-
-
0029119519
-
Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp strain F199
-
Stillwell LC, Thurston SJ, Schneider RP, Romine MF, Fredrickson JK, Saffer JD, (1995) Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp strain F199. Journal of Bacteriology, 177, 4537-4539.
-
(1995)
Journal of Bacteriology
, vol.177
, pp. 4537-4539
-
-
Stillwell, L.C.1
Thurston, S.J.2
Schneider, R.P.3
Romine, M.F.4
Fredrickson, J.K.5
Saffer, J.D.6
-
80
-
-
34547748431
-
Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds
-
Suenaga H, Ohnuki T, Miyazaki K, (2007) Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds. Environmental Microbiology, 9, 2289-2297.
-
(2007)
Environmental Microbiology
, vol.9
, pp. 2289-2297
-
-
Suenaga, H.1
Ohnuki, T.2
Miyazaki, K.3
-
81
-
-
72649090171
-
Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis
-
Suenaga H, Koyama Y, Miyakoshi M, et al,. (2009) Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis. The ISME Journal, 3, 1335-1348.
-
(2009)
The ISME Journal
, vol.3
, pp. 1335-1348
-
-
Suenaga, H.1
Koyama, Y.2
Miyakoshi, M.3
-
82
-
-
78651266825
-
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: The CAMERA resource
-
Sun S, Chen J, Weizhong L, et al,. (2011) Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Research, 39, D546-D551.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Sun, S.1
Chen, J.2
Weizhong, L.3
-
83
-
-
70449408785
-
Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes
-
Tartar A, Wheeler MM, Zhou X, Coy MR, Boucias DG, Scharf ME, (2009) Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes. Biotechnology for Biofuels, 2, 25.
-
(2009)
Biotechnology for Biofuels
, vol.2
, pp. 25
-
-
Tartar, A.1
Wheeler, M.M.2
Zhou, X.3
Coy, M.R.4
Boucias, D.G.5
Scharf, M.E.6
-
84
-
-
35949002126
-
Simultaneous methanogenesis and oxygen reduction by Methanobrevibacter cuticularis at low oxygen fluxes
-
Tholen A, Pester M, Brune A, (2007) Simultaneous methanogenesis and oxygen reduction by Methanobrevibacter cuticularis at low oxygen fluxes. FEMS Microbiology Ecology, 62, 303-312.
-
(2007)
FEMS Microbiology Ecology
, vol.62
, pp. 303-312
-
-
Tholen, A.1
Pester, M.2
Brune, A.3
-
85
-
-
33746268121
-
The ins and outs of ring-cleaving dioxygenases
-
Vaillancourt FH, Bolin JT, Eltis LD, (2006) The ins and outs of ring-cleaving dioxygenases. Critical Reviews in Biochemistry and Molecular Biology, 41, 241-267.
-
(2006)
Critical Reviews in Biochemistry and Molecular Biology
, vol.41
, pp. 241-267
-
-
Vaillancourt, F.H.1
Bolin, J.T.2
Eltis, L.D.3
-
86
-
-
10344235266
-
The role of the conserved residues His-246, His-199, and Tyr-255 in the catalysis of catechol 2,3-dioxygenase from Pseudomonas stutzeri OX1
-
Viggiani A, Siani L, Notomista E, Birolo L, Pucci P, Di Donato A, (2004) The role of the conserved residues His-246, His-199, and Tyr-255 in the catalysis of catechol 2,3-dioxygenase from Pseudomonas stutzeri OX1. Journal of Biological Chemistry, 279, 48630-48639.
-
(2004)
Journal of Biological Chemistry
, vol.279
, pp. 48630-48639
-
-
Viggiani, A.1
Siani, L.2
Notomista, E.3
Birolo, L.4
Pucci, P.5
Di Donato, A.6
-
87
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
Warnecke F, Luginbühl P, Ivanova N, et al,. (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature, 450, 560-565.
-
(2007)
Nature
, vol.450
, pp. 560-565
-
-
Warnecke, F.1
Luginbühl, P.2
Ivanova, N.3
-
89
-
-
35948985557
-
Physiological ecology of Stenoxybacter acetivorans, an obligate microaerophile in termite guts
-
Wertz JT, Breznak JA, (2007b) Physiological ecology of Stenoxybacter acetivorans, an obligate microaerophile in termite guts. Applied and Environmental Microbiology, 73, 6829-6841.
-
(2007)
Applied and Environmental Microbiology
, vol.73
, pp. 6829-6841
-
-
Wertz, J.T.1
Breznak, J.A.2
-
90
-
-
84857097631
-
Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen nov, sp nov, reveals microaerophily and nitrogen fixation genes
-
Wertz JT, Kim E, Breznak JA, Schmidt TM, Rodrigues JLM, (2012) Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen. nov., sp nov, reveals microaerophily and nitrogen fixation genes. Applied and Environmental Microbiology, 78, 1544-1555.
-
(2012)
Applied and Environmental Microbiology
, vol.78
, pp. 1544-1555
-
-
Wertz, J.T.1
Kim, E.2
Breznak, J.A.3
Schmidt, T.M.4
Rodrigues, J.L.M.5
-
91
-
-
0001782263
-
The biology, physiology, and ecology of termites
-
(ed. Vinson S.B.), Praeger Publications, New York.
-
Wood TG, Johnson RA, (1986) The biology, physiology, and ecology of termites. In: Economic Impact and Control of Social Insects (ed., Vinson SB,), pp. 1-68. Praeger Publications, New York.
-
(1986)
Economic Impact and Control of Social Insects
, pp. 1-68
-
-
Wood, T.G.1
Johnson, R.A.2
-
92
-
-
0018931723
-
Cellulose metabolism by the termite flagellate Trichomitopsis termopsidis
-
Yamin MA, (1980) Cellulose metabolism by the termite flagellate Trichomitopsis termopsidis. Applied and Environmental Microbiology, 39, 859-863.
-
(1980)
Applied and Environmental Microbiology
, vol.39
, pp. 859-863
-
-
Yamin, M.A.1
-
93
-
-
0018699276
-
Cellulolytic activity of an axenically-cultivated termite flagellate, Trichomitopsis termopsidis
-
Yamin MA, Trager W, (1979) Cellulolytic activity of an axenically-cultivated termite flagellate, Trichomitopsis termopsidis. Journal of General Microbiology, 113, 417-420.
-
(1979)
Journal of General Microbiology
, vol.113
, pp. 417-420
-
-
Yamin, M.A.1
Trager, W.2
-
94
-
-
20044369217
-
Physiological properties of the gut lumen of terrestrial isopods (Isopoda: Oniscidea): Adaptive to digesting lignocellulose?
-
Zimmer M, Brune A, (2005) Physiological properties of the gut lumen of terrestrial isopods (Isopoda: Oniscidea): adaptive to digesting lignocellulose? Journal of Comparative Physiology B, 175, 275-283.
-
(2005)
Journal of Comparative Physiology B
, vol.175
, pp. 275-283
-
-
Zimmer, M.1
Brune, A.2
|