Genetic diversity of sapovirus in non-hospitalized adults with sporadic cases of acute gastroenteritis in Shanghai, China

Journal of Clinical Virology

Volumn 59, Issue 4, 2014, Pages 250-254

  Wang, Gang ^a   Shen, Zhen ^a   Qian, Fangxing ^b   Li, Yang ^c   Yuan, Zhenghong ^d   Zhang, Jun ^a  

^a SHANGHAI PUBLIC HEALTH CLINICAL CENTER   (China)

^b Shanghai Changning Center Hospital   (China)

^c Tongji University   (China)

^d FUDAN UNIVERSITY   (China)

Author keywords

Adults; Genetic diversity; Sapovirus; Shanghai

Indexed keywords

ACUTE GASTROENTERITIS; ADOLESCENT; ADULT; ADULT DISEASE; AGE DISTRIBUTION; ARTICLE; CALICIVIRUS INFECTION; CHINA; DISEASE SURVEILLANCE; FECES CULTURE; GENE SEQUENCE; GENETIC EPIDEMIOLOGY; GENETIC VARIABILITY; GENOTYPE; GROUPS BY AGE; HUMAN; INFECTIOUS DIARRHEA; MAJOR CLINICAL STUDY; MIDDLE AGED; NUCLEOTIDE SEQUENCE; OUTPATIENT; PHYLOGENY; PREVALENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SAPOVIRUS; SAPOVIRUS INFECTION; SEASONAL VARIATION; SPRING; VIRUS CAPSID; VIRUS DETECTION; VIRUS GENE; VIRUS STRAIN; WINTER; YOUNG ADULT;

ADULTS; GENETIC DIVERSITY; SAPOVIRUS; SHANGHAI;

ADOLESCENT; ADULT; AGED; CALICIVIRIDAE INFECTIONS; CAPSID PROTEINS; CHINA; CLUSTER ANALYSIS; FECES; GASTROENTERITIS; GENETIC VARIATION; GENOTYPE; HUMANS; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; OUTPATIENTS; PREVALENCE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SAPOVIRUS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; YOUNG ADULT;

EID: 84895920525     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2014.01.007     Document Type: Article

References (17)

1. Svraka S., Vennema H., van der Veer B., Hedlund K.O., Thorhagen M., Siebenga J., et al. Epidemiology and genotype analysis of emerging sapovirus-associated infections across Europe. J Clin Microbiol 2010, 48:2191-2198.
2. Pang X.L., Lee B.E., Tyrrell G.J., Preiksaitis J.K. Epidemiology and genotype analysis of sapovirus associated with gastroenteritis outbreaks in Alberta, Canada: 2004-2007. J Infect Dis 2009, 199:547-551.
3. Chan-It W., Thongprachum A., Okitsu S., Mizuguchi M., Ushijima H. Epidemiology and molecular characterization of sapovirus and astrovirus in Japan, 2008-2009. Jpn J Infect Dis 2010, 63:302-303.
4. Ishida S., Yoshizumi S., Miyoshi M., Ikeda T., Okui T., Katayama K., et al. Characterization of sapoviruses detected in Hokkaido, Japan. Jpn J Infect Dis 2008, 61:504-506.
5. Wu F.T., Oka T., Takeda N., Katayama K., Hansman G.S., Muo C.H., et al. Acute gastroenteritis caused by GI/2 sapovirus, Taiwan, 2007. Emerg Infect Dis 2008, 14:1169-1171.
6. Johansson P.J., Bergentoft K., Larsson P.A., Magnusson G., Widell A., Thorhagen M., et al. A nosocomial sapovirus-associated outbreak of gastroenteritis in adults. Scand J Infect Dis 2005, 37:200-204.
7. Hansman G.S., Oka T., Katayama K., Takeda N. Human sapoviruses: genetic diversity, recombination, and classification. Rev Med Virol 2007, 17:133-141.
8. Oka T., Mori K., Iritani N., Harada S., Ueki Y., Iizuka S., et al. Human sapovirus classification based on complete capsid nucleotide sequences. Arch Virol 2012, 157:349-352.
9. Harada S., Okada M., Yahiro S., Nishimura K., Matsuo S., Miyasaka J., et al. Surveillance of pathogens in outpatients with gastroenteritis and characterization of sapovirus strains between 2002 and 2007 in Kumamoto Prefecture, Japan. J Med Virol 2009, 81:1117-1127.
10. Yan H.N., Yagyu F., Okitsu S., Nishio O., Ushijima H. Detection of norovirus (GI, GII), sapovirus and astrovirus in fecal samples using reverse transcription single-round multiplex PCR. J Virol Methods 2003, 114:37-44.
11. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739.
12. Shen Z., Qian F., Li Y., Hu Y., Yuan Z., Zhang J. Novel norovirus GII.4 variant, Shanghai, China, 2012. Emerg Infect Dis 2013, 19:1337-1339.
13. Shen Z., Wang G., Zhang W., Qian F., Li Y., Zhang M., et al. Rotavirus infection and its genetic characterization in non-hospitalized adults with acute gastroenteritis in Shanghai, China. Arch Virol 2013, 158:1671-1677.
14. Malasao R., Maneekarn N., Khamrin P., Pantip C., Tonusin S., Ushijima H., et al. Genetic diversity of norovirus, sapovirus, and astrovirus isolated from children hospitalized with acute gastroenteritis in Chiang Mai, Thailand. J Med Virol 2008, 80:1749-1755.
15. Dey S.K., Phathammavong O., Nguyen T.D., Thongprachum A., Chan-It W., Okitsu S., et al. Seasonal pattern and genotype distribution of sapovirus infection in Japan, 2003-2009. Epidemiol Infect 2012, 140:74-77.
16. Gallimore C.I., Iturriza-Gomara M., Lewis D., Cubitt D., Cotterill H., Gray J.J. Characterization of sapoviruses collected in the United Kingdom from 1989 to 2004. J Med Virol 2006, 78:673-682.
17. Hansman G.S., Takeda N., Katayama K., Tu E.T., McIver C.J., Rawlinson W.D., et al. Genetic diversity of sapovirus in children, Australia. Emerg Infect Dis 2006, 12:141-143.