-
1
-
-
56649124715
-
The influence of sex, handedness, and washing on the diversity of hand surface bacteria
-
Fierer N, Hamady M, Lauber CL, Knight R (2008) The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci USA 105(46): 17994-17999.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.46
, pp. 17994-17999
-
-
Fierer, N.1
Hamady, M.2
Lauber, C.L.3
Knight, R.4
-
2
-
-
79957574938
-
Moving pictures of the human microbiome
-
Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, et al. (2011) Moving pictures of the human microbiome. Genome Biol 12(5): R50.
-
(2011)
Genome Biol
, vol.12
, Issue.5
-
-
Caporaso, J.G.1
Lauber, C.L.2
Costello, E.K.3
Berg-Lyons, D.4
Gonzalez, A.5
-
3
-
-
46449124442
-
A diversity profile of the human skin microbiota
-
DOI 10.1101/gr.075549.107
-
Grice EA, Kong HH, Renaud G, Young AC, NISC Comparative Sequencing Program, et al. (2008) A diversity profile of the human skin microbiota. Genome Research 18: 1043-1050. (Pubitemid 351931155)
-
(2008)
Genome Research
, vol.18
, Issue.7
, pp. 1043-1050
-
-
Grice, E.A.1
Kong, H.H.2
Renaud, G.3
Young, A.C.4
Bouffard, G.G.5
Blakesley, R.W.6
Wolfsberg, T.G.7
Turner, M.L.8
Segre, J.A.9
-
4
-
-
34249050237
-
Enzymatic lysis of microbial cells
-
DOI 10.1007/s10529-007-9345-2
-
Salazar O, Asenjo JA (2007) Enzymatic lysis of microbial cells. Biotechnol Lett 29(7): 985-94. (Pubitemid 46800623)
-
(2007)
Biotechnology Letters
, vol.29
, Issue.7
, pp. 985-994
-
-
Salazar, O.1
Asenjo, J.A.2
-
5
-
-
84858763397
-
Evaluation of methods for the extraction and purification of DNA from the human microbiome
-
Yuan S, Cohen DB, Ravel J, Abdo Z, Forney LJ (2012) Evaluation of methods for the extraction and purification of DNA from the human microbiome. PLoS One 7(3): e33865.
-
(2012)
PLoS One
, vol.7
, Issue.3
-
-
Yuan, S.1
Cohen, D.B.2
Ravel, J.3
Abdo, Z.4
Forney, L.J.5
-
6
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss PD, Gevers D, Westcott SL (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6(12): e27310.
-
(2011)
PLoS One
, vol.6
, Issue.12
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
7
-
-
84856496549
-
Next generation sequencing and bioinformatic bottlenecks: The current state of metagenomic data analysis
-
Scholz MB, Lo CC, Chain PS (2012) Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis. Curr Opin Biotechnol 23(1): 9-15.
-
(2012)
Curr Opin Biotechnol
, vol.23
, Issue.1
, pp. 9-15
-
-
Scholz, M.B.1
Lo, C.C.2
Chain, P.S.3
-
8
-
-
84895859888
-
Healthcare Workers' Hand Microbiome May Mediate Carriage of Hospital Pathogens
-
Rosenthal M, Aiello A, Larson E, Chenoweth C, Foxman B (2014) Healthcare Workers' Hand Microbiome May Mediate Carriage of Hospital Pathogens. Pathogens 3(1): 1-13.
-
(2014)
Pathogens
, vol.3
, Issue.1
, pp. 1-13
-
-
Rosenthal, M.1
Aiello, A.2
Larson, E.3
Chenoweth, C.4
Foxman, B.5
-
9
-
-
66349083859
-
Topographical and Temporal Diversity of the Human Skin Microbiome
-
Grice EA, Kong HH, Conlan S, Deming CB, Davis J, et al. (2009) Topographical and Temporal Diversity of the Human Skin Microbiome. Science 324: 1190.
-
(2009)
Science
, vol.324
, pp. 1190
-
-
Grice, E.A.1
Kong, H.H.2
Conlan, S.3
Deming, C.B.4
Davis, J.5
-
10
-
-
77957865300
-
Deep sequencing of the vaginal microbiota of women with HIV
-
doi: 10.1371/journal.pone.0012078
-
Hummelen R, Fernandes AD, Macklaim JM, Dickson RJ, Changalucha J, et al. (2010) Deep sequencing of the vaginal microbiota of women with HIV. PLoS One 5(8): e12078. doi: 10.1371/journal.pone.0012078.
-
(2010)
PLoS One
, vol.5
, Issue.8
-
-
Hummelen, R.1
Fernandes, A.D.2
Macklaim, J.M.3
Dickson, R.J.4
Changalucha, J.5
-
11
-
-
84866299836
-
A Canadian Working Group report on fecal microbial therapy: Microbial ecosystems therapeutics
-
Allen-Vercoe E, Reid G, Viner N, Gloor GB, Hota S, et al. (2012) A Canadian Working Group report on fecal microbial therapy: microbial ecosystems therapeutics. Can J Gastroenterol 26(7): 457-62.
-
(2012)
Can J Gastroenterol
, vol.26
, Issue.7
, pp. 457-462
-
-
Allen-Vercoe, E.1
Reid, G.2
Viner, N.3
Gloor, G.B.4
Hota, S.5
-
12
-
-
78149429458
-
Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products
-
Gloor GB, Hummelen R, Macklaim JM, Dickson RJ, Fernandes AD, et al. (2010) Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products. PLoS One 5(10): e15406.
-
(2010)
PLoS One
, vol.5
, Issue.10
-
-
Gloor, G.B.1
Hummelen, R.2
Macklaim, J.M.3
Dickson, R.J.4
Fernandes, A.D.5
-
13
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27(16): 2194-200.
-
(2011)
Bioinformatics
, vol.27
, Issue.16
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
14
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
doi: 10.1093/nar/gkn879
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acid Res 37(Database issue): D141-5. doi: 10.1093/nar/gkn879.
-
(2009)
Nucleic Acid Res
, vol.37
, Issue.DATABASE ISSUE
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
-
15
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5): 335-6.
-
(2010)
Nat Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
-
16
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
17
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
DOI 10.1093/bioinformatics/btm404
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23(21): 2947-8. (Pubitemid 350162903)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
Mcgettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
18
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
DOI 10.1128/AEM.71.12.8228-8235.2005
-
Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71(12): 8228-35. (Pubitemid 41803949)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.12
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
19
-
-
0027804103
-
Non-parametric multivariate analysis of changes in community structure
-
Clarke KR (1993) Non-parametric multivariate analysis of changes in community structure. Australian Journal of Ecology 18: 117-143.
-
(1993)
Australian Journal of Ecology
, vol.18
, pp. 117-143
-
-
Clarke, K.R.1
-
20
-
-
72249087115
-
International study of the prevalence and outcomes of infection in intensive care units
-
Vincent JL, Rello J, Marshall J, Silva E, Anzueto A, et al. (2009) International study of the prevalence and outcomes of infection in intensive care units. JAMA 302(21): 2323-9.
-
(2009)
JAMA
, vol.302
, Issue.21
, pp. 2323-2329
-
-
Vincent, J.L.1
Rello, J.2
Marshall, J.3
Silva, E.4
Anzueto, A.5
-
21
-
-
27144469281
-
Could hospital patients' hands constitute a missing link?
-
DOI 10.1016/j.jhin.2005.03.016, PII S0195670105001738
-
Banfield KR, Kerr KG (2005) Could hospital patients' hands constitute a missing link? J Hosp Infect 61: 183-188. (Pubitemid 41487459)
-
(2005)
Journal of Hospital Infection
, vol.61
, Issue.3
, pp. 183-188
-
-
Banfield, K.R.1
Kerr, K.G.2
-
22
-
-
84895880026
-
DNA extraction: Overcoming obstacles in microbial studies
-
10/03
-
Weaver J (10/03/2012) DNA extraction: Overcoming obstacles in microbial studies. Biotechniques [http://www.biotechniques.com/news/DNA-Extraction- Overcoming-Obstacles-in-Microbial-Studies/biotechniques-335698.html?utm-source= BioTechniques+Newsletters+%26+e-Alerts&utm-campaign=0a735f78a7- weekly&utm-medium=email#.UK1YLoYhWSp].
-
(2012)
Biotechniques
-
-
Weaver, J.1
-
23
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, et al. (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature 475(7356): 348-52.
-
(2011)
Nature
, vol.475
, Issue.7356
, pp. 348-352
-
-
Rothberg, J.M.1
Hinz, W.2
Rearick, T.M.3
Schultz, J.4
Mileski, W.5
-
24
-
-
84860756398
-
Performance comparison of benchtop high-throughput sequencing platforms
-
Loman NJ, Misra RV, Dallman TJ, Constantinidou C, Gharbia SE, et al. (2012) Performance comparison of benchtop high-throughput sequencing platforms. Nat Biotechnol 30(5): 434-9.
-
(2012)
Nat Biotechnol
, vol.30
, Issue.5
, pp. 434-439
-
-
Loman, N.J.1
Misra, R.V.2
Dallman, T.J.3
Constantinidou, C.4
Gharbia, S.E.5
-
25
-
-
84865591846
-
A tale of three next generation sequencing platforms: Comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
-
Quail MA, Smith M, Coupland P, Otto TD, Harris SR, et al. (2012) A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics 13: 341.
-
(2012)
BMC Genomics
, vol.13
, pp. 341
-
-
Quail, M.A.1
Smith, M.2
Coupland, P.3
Otto, T.D.4
Harris, S.R.5
-
26
-
-
84864920004
-
Comparison of next-generation sequencing systems
-
Liu L, Li Y, Li S, Hu N, He Y, et al. (2012) Comparison of next-generation sequencing systems. J Biomed Biotechnol 2012: 251364.
-
(2012)
J Biomed Biotechnol
, vol.2012
, pp. 251364
-
-
Liu, L.1
Li, Y.2
Li, S.3
Hu, N.4
He, Y.5
-
27
-
-
84864754044
-
Bacterial community shift in treated periodontitis patients revealed by ion torrent 16S rRNA gene amplicon sequencing
-
Jünemann S, Prior K, Szczepanowski R, Harks I, Ehmke B, et al. (2012) Bacterial community shift in treated periodontitis patients revealed by ion torrent 16S rRNA gene amplicon sequencing. PLoS One 7(8): e41606.
-
(2012)
PLoS One
, vol.7
, Issue.8
-
-
Jünemann, S.1
Prior, K.2
Szczepanowski, R.3
Harks, I.4
Ehmke, B.5
-
28
-
-
84877020842
-
Stool substitute transplant therapy for the eradication of Clostridium difficile infection: 'RePOOPulating' the gut
-
Petrof EO, Gloor GB, Vanner SJ, Weese SJ, Carter D, et al. (2013) Stool substitute transplant therapy for the eradication of Clostridium difficile infection: 'RePOOPulating' the gut. Microbiome 1(3): 1-12.
-
(2013)
Microbiome
, vol.1
, Issue.3
, pp. 1-12
-
-
Petrof, E.O.1
Gloor, G.B.2
Vanner, S.J.3
Weese, S.J.4
Carter, D.5
|