Bayesian classification algorithms for automated allele assignment

BeadChip Molecular Immunohematology: Toward Routine Donor and Patient Antigen Profiling by DNA Analysis

Volumn , Issue , 2011, Pages 133-148

  Podual, Kairali ^a   Zhang, Yi ^a   Mezokh, Natalia ^a   Yang, Jiacheng ^a   Wilson, Randall ^a  

^a Immucor Company   (United States)

Author keywords

Allele; Bayes' theorem; Bayesian classification; DNA array; Genotype; Human leukocyte antigen; RHCE; RHD

Indexed keywords

EID: 84895553464     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-4419-7512-6_12     Document Type: Chapter

References (19)

1. Hashmi G, Shariff T, Zhang Y et al. (2007) Determination of 24 minor red blood cell antigens for more than 2000 blood donors by high-throughput DNA analysis. Transfusion 47:736-747
2. Rabbee N, Speed TP (2006) A genotype galling algorithm for Affymetrix SNP arrays. Bioinformatics 1:7-12
3. Rabbee N, Wong G (2006) The RLMM package. R Statistical System
4. Podder M, Welch WJ, Zamar RH et al. (2006) Dynamic variable selection in SNP genotype autocalling from APEX microarray data. BMC Bioinformatics 7:52-531
5. Zhou N, Wang L (2007) Effective selection of informative SNPs and classification on the HapMap genotype data. BMC Bioinformatics 8:484-492
6. Huentelman MJ, Craig DW, Shieh AD et al. (2005) SNiPer: improved SNP genotype calling for Affymetrix 10K GeneChip microarray data. BMC Genomics 6:149-157
7. Shen R, Fan J, Campbell D, Chang W et al. (2005) High-throughput SNP genotyping on universal bead arrays. Mutat Res 573:70-82
8. Giannoulatou E, Yau C, Colella S et al. (2008) GenoSNP: a variational Bayes within-sample SNP genotyping algorithm that does not require a reference population. Bioinformatics 24:2209-2214
9. Abramson N (1963) Information theory and coding. McGraw-Hill, New York
10. Bishop CM (2006) Pattern recognition and machine learning. Springer, New York
11. Theodoridis S, Koutroumgbas K (2009) Pattern recognition, 4th edn. Academic Press, New York
12. Duda RO, Hart PE, Stork DG (2001) Pattern classification. Wiley, New York
13. Domingos P, Pazzani M (1997) On the optimality of the simple Bayesian classifier under zero-one loss. Mach Learn 29:103-130
14. Hsu CN, Huang HJ, Wong TT (2000) Why discretization works for naïve Bayesian classifiers. In: Proceedings of the seventeenth international conference on machine learning, pp 399-406
15. Yang Y, Webb GI (2003) On why discretization works for naïve-Bayes classifiers. Proceedings of AI'03, LNAI, 2903, pp 440-452
16. Robinson J, Waller MJ, Parham P et al. (2003) IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex. Nucleic Acids Res 31:311-314
17. Robinson J, Marsh SG (2007) The IMGT/HLA database. Methods Mol Biol, 409:43-60
18. Cano P, Klitz W, Mack SJ et al. (2007) Common and well-documented HLA alleles: report of the ad-hoc committee of the American society for histocompatiblity and immunogenetics. Hum Immunol 68:392-417
19. Cao K, Hollenbach J, Shi X et al. (2001) Analysis of the frequencies of HLA-A, B, and C alleles and haplotypes in the five major ethnic groups of the United States reveals high levels of diversity in these loci and contrasting distribution patterns in these populations. Hum Immunol 62:1009-1030