Decoding the noncoding transcripts in human heart failure

Circulation

Volumn 129, Issue 9, 2014, Pages 958-960

  Xiao, Xinshu ^a   Touma, Marlin ^a   Wang, Yibin ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Editorials; heart failure; humans; long noncoding; RNA; transcriptome

Indexed keywords

BRAIN NATRIURETIC PEPTIDE; CYTOSKELETON PROTEIN; LONG UNTRANSLATED RNA; MICRORNA; PIWI INTERACTING RNA; RIBOSOME RNA; RNA; SMALL NUCLEOLAR RNA; SMALL UNTRANSLATED RNA; TRANSCRIPTOME; TRANSFER RNA; TROPONIN;

ASSISTED CIRCULATION; CARDIOMYOPATHY; CELL DIFFERENTIATION; DISEASE CLASSIFICATION; DISEASE COURSE; EDITORIAL; ENDOTHELIUM CELL; FIBROBLAST; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC CODE; HEART DEVELOPMENT; HEART FAILURE; HEART MUSCLE CELL; HEART VENTRICLE FUNCTION; HUMAN; ISCHEMIC CARDIOMYOPATHY; LEFT VENTRICULAR ASSIST DEVICE; NONISCHEMIC CARDIOMYOPATHY; PATHOGENESIS; PRIORITY JOURNAL; RNA PROCESSING; RNA SEQUENCE; RNA SPLICING; RNA TRANSCRIPTION; SMOOTH MUSCLE FIBER;

EDITORIALS; HEART FAILURE; HUMANS; RNA, LONG NONCODING; TRANSCRIPTOME;

FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HEART; HEART FAILURE; HEART-ASSIST DEVICES; HUMANS; MALE; RNA, UNTRANSLATED; SEQUENCE ANALYSIS, RNA;

EID: 84895510756     PISSN: 00097322     EISSN: 15244539     Source Type: Journal    
DOI: 10.1161/CIRCULATIONAHA.114.007548     Document Type: Editorial

References (18)

1. Burke MA, Cotts WG. Interpretation of B-type natriuretic peptide in cardiac disease and other comorbid conditions. Heart Fail Rev. 2007;12:23-36.
2. Sato Y, Fujiwara H, Takatsu Y. Cardiac troponin and heart failure in the era of high-sensitivity assays. J Cardiol. 2012;60:160-167.
3. Deng MC, Edwards LB, Hertz MI, Rowe AW, Keck BM, Kormos R, Naftel DC, Kirklin JK, Taylor DO; International Society for Heart and Lung Transplantation. Mechanical circulatory support device database of the International Society for Heart and Lung Transplantation: third annual report-2005. J Heart Lung Transplant. 2005;24:1182-1187.
4. Oz MC, Argenziano M, Catanese KA, Gardocki MT, Goldstein DJ, Ashton RC, Gelijns AC, Rose EA, Levin HR. Bridge experience with long-term implantable left ventricular assist devices. Are they an alternative to transplantation? Circulation. 1997;95:1844-1852.
5. Latif S, Masino A, Garry DJ. Transcriptional pathways direct cardiac development and regeneration. Trends Cardiovasc Med. 2006;16:234-240.
6. Nanni L, Romualdi C, Maseri A, Lanfranchi G. Differential gene expression profiling in genetic and multifactorial cardiovascular diseases. J Mol Cell Cardiol. 2006;41:934-948.
7. Margulies KB, Matiwala S, Cornejo C, Olsen H, Craven WA, Bednarik D. Mixed messages: transcription patterns in failing and recovering human myocardium. Circ Res. 2005;96:592-599.
8. Hall JL, Grindle S, Han X, Fermin D, Park S, Chen Y, Bache RJ, Mariash A, Guan Z, Ormaza S, Thompson J, Graziano J, de Sam Lazaro SE, Pan S, Simari RD, Miller LW. Genomic profiling of the human heart before and after mechanical support with a ventricular assist device reveals alterations in vascular signaling networks. Physiol Genomics. 2004;17:283-291.
9. Birks EJ, Latif N, Owen V, Bowles C, Felkin LE, Mullen AJ, Khaghani A, Barton PJ, Polak JM, Pepper JR, Banner NR, Yacoub MH. Quantitative myocardial cytokine expression and activation of the apoptotic pathway in patients who require left ventricular assist devices. Circulation. 2001;104(12 Suppl 1):I233-I240.
10. Kittleson MM, Ye SQ, Irizarry RA, Minhas KM, Edness G, Conte JV, Parmigiani G, Miller LW, Chen Y, Hall JL, Garcia JG, Hare JM. Identification of a gene expression profile that differentiates between ischemic and nonischemic cardiomyopathy. Circulation. 2004;110: 3444-3451.
11. Shi X, Sun M, Liu H, Yao Y, Song Y. Long non-coding RNAs: a new frontier in the study of human diseases. Cancer Lett. 2013;339:159-166.
12. Martens-Uzunova ES, Olvedy M, Jenster G. Beyond microRNA-novel RNAs derived from small non-coding RNA and their implication in cancer. Cancer Lett. 2013;340:201-211.
13. Scheuermann JC, Boyer LA. Getting to the heart of the matter: long non-coding RNAs in cardiac development and disease. EMBO J. 2013;32:1805-1816.
14. Ounzain S, Crippa S, Pedrazzini T. Small and long non-coding RNAs in cardiac homeostasis and regeneration. Biochim Biophys Acta. 2013;1833: 923-933.
15. Churko JM, Mantalas GL, Snyder MP, Wu JC. Overview of high throughput sequencing technologies to elucidate molecular pathways in cardiovascular diseases. Circ Res. 2013;112:1613-1623.
16. Lee JH, Gao C, Peng G, Greer C, Ren S, Wang Y, Xiao X. Analysis of transcriptome complexity through RNA sequencing in normal and failing murine hearts. Circ Res. 2011;109:1332-1341.
17. Matkovich SJ, Van Booven DJ, Eschenbacher WH, Dorn GW 2nd. RISC RNA sequencing for context-specific identification of in vivo microRNA targets. Circ Res. 2011;108:18-26.
18. Yang KC, Yamada KA, Patel AY, Topkara VK, George I, Cheema FH, Ewald GA, Mann DL, Nerbonne JM. Deep RNA sequencing reveals dynamic regulation of myocardial noncoding RNA in failing human heart and remodeling with mechanical circulatory support. Circulation. 2014;129:1009-1021.