-
1
-
-
54849409886
-
Changing paradigms in groundwater ecology-from the 'living fossils' tradition to the 'new groundwater ecology'
-
Danielopol D.L., Griebler C. Changing paradigms in groundwater ecology-from the 'living fossils' tradition to the 'new groundwater ecology'. Int Rev Hydrobiol 2008, 93:565-577.
-
(2008)
Int Rev Hydrobiol
, vol.93
, pp. 565-577
-
-
Danielopol, D.L.1
Griebler, C.2
-
2
-
-
62949219320
-
Microbial diversity in groundwater ecosystems
-
Griebler C., Lueders T. Microbial diversity in groundwater ecosystems. Freshwater Biology 2009, 54:649-677.
-
(2009)
Freshwater Biology
, vol.54
, pp. 649-677
-
-
Griebler, C.1
Lueders, T.2
-
3
-
-
0030866686
-
Protistan communities in aquifers: a review
-
Novarino G., Warren A., Butler H., Lambourne G., Boxshall A., Bateman J., Kinner N.E., Harvey R.W., Mosse R.A., Teltsch B. Protistan communities in aquifers: a review. FEMS Microbiol Rev 1997, 20:261-275.
-
(1997)
FEMS Microbiol Rev
, vol.20
, pp. 261-275
-
-
Novarino, G.1
Warren, A.2
Butler, H.3
Lambourne, G.4
Boxshall, A.5
Bateman, J.6
Kinner, N.E.7
Harvey, R.W.8
Mosse, R.A.9
Teltsch, B.10
-
4
-
-
84881260284
-
Phylogenetic detection of novel Cryptomycota in an Iowa (United States) aquifer and from previously collected marine and freshwater targeted high-throughput sequencing sets
-
Livermore J.A., Mattes T.E. Phylogenetic detection of novel Cryptomycota in an Iowa (United States) aquifer and from previously collected marine and freshwater targeted high-throughput sequencing sets. Environ Microbiol 2013, 15:2333-2341.
-
(2013)
Environ Microbiol
, vol.15
, pp. 2333-2341
-
-
Livermore, J.A.1
Mattes, T.E.2
-
5
-
-
43449125894
-
Viruses in granitic groundwater from 69 to 450m depth of the Aspö hard rock laboratory, Sweden
-
Kyle J.E., Eydal H.S., Ferris F.G., Pedersen K. Viruses in granitic groundwater from 69 to 450m depth of the Aspö hard rock laboratory, Sweden. ISME J 2008, 2:571-574.
-
(2008)
ISME J
, vol.2
, pp. 571-574
-
-
Kyle, J.E.1
Eydal, H.S.2
Ferris, F.G.3
Pedersen, K.4
-
6
-
-
62949126680
-
Groundwater biodiversity in Europe
-
Deharveng L., Stoch F., Gibert J., Bedos A., Galassi D., Zagmajster M., Brancelj A., Camacho A., Fiers F., Martin P., et al. Groundwater biodiversity in Europe. Freshw Biol 2009, 54:709-726.
-
(2009)
Freshw Biol
, vol.54
, pp. 709-726
-
-
Deharveng, L.1
Stoch, F.2
Gibert, J.3
Bedos, A.4
Galassi, D.5
Zagmajster, M.6
Brancelj, A.7
Camacho, A.8
Fiers, F.9
Martin, P.10
-
7
-
-
33749483371
-
Microbial biocenoses in pristine aquifers and an assessment of investigation methods
-
Goldscheider N., Hunkeler D., Rossi P. Microbial biocenoses in pristine aquifers and an assessment of investigation methods. Hydrogeol J 2006, 14:926-941.
-
(2006)
Hydrogeol J
, vol.14
, pp. 926-941
-
-
Goldscheider, N.1
Hunkeler, D.2
Rossi, P.3
-
8
-
-
84880639832
-
The distribution of groundwater habitats in Europe
-
Cornu J.F., Eme D., Malard F. The distribution of groundwater habitats in Europe. Hydrogeol J 2013, 21:949-960.
-
(2013)
Hydrogeol J
, vol.21
, pp. 949-960
-
-
Cornu, J.F.1
Eme, D.2
Malard, F.3
-
9
-
-
84873435886
-
Evolution and development in cave animals: from fish to crustaceans
-
John Wiley & Sons
-
Protas M., Jeffery W.R. Evolution and development in cave animals: from fish to crustaceans. Wiley Interdiscip Rev Dev Biol 2012, 1:845. John Wiley & Sons.
-
(2012)
Wiley Interdiscip Rev Dev Biol
, vol.1
, pp. 845
-
-
Protas, M.1
Jeffery, W.R.2
-
10
-
-
84871593065
-
Evolution of an adaptive behavior and its sensory receptors promotes eye regression in blind cavefish
-
Yoshizawa M., Yamamoto Y., O'Quin K.E., Jeffery W.R. Evolution of an adaptive behavior and its sensory receptors promotes eye regression in blind cavefish. BMC Biol 2012, 10.
-
(2012)
BMC Biol
, pp. 10
-
-
Yoshizawa, M.1
Yamamoto, Y.2
O'Quin, K.E.3
Jeffery, W.R.4
-
11
-
-
79960266674
-
The functional significance of bioturbation and biodeposition on biogeochemical processes at the water-sediment interface in freshwater and marine ecosystems
-
Mermillod-Blondin F. The functional significance of bioturbation and biodeposition on biogeochemical processes at the water-sediment interface in freshwater and marine ecosystems. J North Am Benthol Soc 2011, 30:770-778.
-
(2011)
J North Am Benthol Soc
, vol.30
, pp. 770-778
-
-
Mermillod-Blondin, F.1
-
12
-
-
59549090033
-
A proposal for an extended typology of groundwater habitats
-
Hahn H.H. A proposal for an extended typology of groundwater habitats. Hydrogeol J 2009, 17:77-81.
-
(2009)
Hydrogeol J
, vol.17
, pp. 77-81
-
-
Hahn, H.H.1
-
13
-
-
62949216423
-
Assessing and conserving groundwater biodiversity: synthesis and perspectives
-
Gibert J., Culver D.C., Dole-Olivier M.J., Malard F., Christman M.C., Deharveng L. Assessing and conserving groundwater biodiversity: synthesis and perspectives. Freshw Biol 2009, 54:930-941.
-
(2009)
Freshw Biol
, vol.54
, pp. 930-941
-
-
Gibert, J.1
Culver, D.C.2
Dole-Olivier, M.J.3
Malard, F.4
Christman, M.C.5
Deharveng, L.6
-
14
-
-
1642281849
-
Sampling adequacy in an extreme environment: species richness patterns in Slovenian caves
-
Culver D.C., Christman M.C., Sket B., Trontelj J. Sampling adequacy in an extreme environment: species richness patterns in Slovenian caves. Biodivers Conserv 2004, 13:1209-1229.
-
(2004)
Biodivers Conserv
, vol.13
, pp. 1209-1229
-
-
Culver, D.C.1
Christman, M.C.2
Sket, B.3
Trontelj, J.4
-
15
-
-
27744457914
-
Patterns of endemism of the eastern North American cave fauna
-
Christman M.C., Culver D.C., Madden M.K., White D. Patterns of endemism of the eastern North American cave fauna. J Biogeogr 2005, 32:1441-1452.
-
(2005)
J Biogeogr
, vol.32
, pp. 1441-1452
-
-
Christman, M.C.1
Culver, D.C.2
Madden, M.K.3
White, D.4
-
16
-
-
62949169256
-
Diversity patterns of stygobiotic crustaceans across multiple spatial scales in Europe
-
Malard F., Boutin C., Camacho A., Ferreira D., Michel G., Sket B., Stoch F. Diversity patterns of stygobiotic crustaceans across multiple spatial scales in Europe. Freshw Biol 2009, 54:756-776.
-
(2009)
Freshw Biol
, vol.54
, pp. 756-776
-
-
Malard, F.1
Boutin, C.2
Camacho, A.3
Ferreira, D.4
Michel, G.5
Sket, B.6
Stoch, F.7
-
17
-
-
44949249818
-
Latitudinal variation of diversity in European freshwater animals is not concordant across habitat types
-
Hof C., Brändle M., Brandl R. Latitudinal variation of diversity in European freshwater animals is not concordant across habitat types. Global Ecolo Biogeogr 2008, 17:539-546.
-
(2008)
Global Ecolo Biogeogr
, vol.17
, pp. 539-546
-
-
Hof, C.1
Brändle, M.2
Brandl, R.3
-
18
-
-
77954689822
-
Stygobiotic crustacean species richness: a question of numbers, a matter of scale
-
Stoch F., Galassi D.M.P. Stygobiotic crustacean species richness: a question of numbers, a matter of scale. Hydrobiologia 2010, 653:217-234.
-
(2010)
Hydrobiologia
, vol.653
, pp. 217-234
-
-
Stoch, F.1
Galassi, D.M.P.2
-
19
-
-
33645028357
-
The mid-latitude biodiversity ridge in terrestrial cave fauna
-
Culver D.C., Deharveng L., Bedos A., Lewis J.J., Madden M., Reddell J.R., Sket B., Trontelj P., White D. The mid-latitude biodiversity ridge in terrestrial cave fauna. Ecography 2006, 29:120-128.
-
(2006)
Ecography
, vol.29
, pp. 120-128
-
-
Culver, D.C.1
Deharveng, L.2
Bedos, A.3
Lewis, J.J.4
Madden, M.5
Reddell, J.R.6
Sket, B.7
Trontelj, P.8
White, D.9
-
20
-
-
84855291427
-
Metagenomic comparison of microbial communities inhabiting confined and unconfined aquifer ecosystems
-
Smith R.J., Jeffries T.C., Roudney B., Fitch A.J., Seymour J.R., Delpin M.W., Newton K., Brown M.H., Mitchell J.G. Metagenomic comparison of microbial communities inhabiting confined and unconfined aquifer ecosystems. Environ Microbiol 2012, 14:240-253.
-
(2012)
Environ Microbiol
, vol.14
, pp. 240-253
-
-
Smith, R.J.1
Jeffries, T.C.2
Roudney, B.3
Fitch, A.J.4
Seymour, J.R.5
Delpin, M.W.6
Newton, K.7
Brown, M.H.8
Mitchell, J.G.9
-
21
-
-
84887611774
-
National survey of molecular bacterial diversity of New Zealand groundwater: relationships between biodiversity, groundwater chemistry and aquifer characteristics
-
early online
-
Sirisena K.A., Daughney C.J., Moreau-Fournier M., Ryan K.G., Chambers G.K. National survey of molecular bacterial diversity of New Zealand groundwater: relationships between biodiversity, groundwater chemistry and aquifer characteristics. FEMS Microbiol Ecol 2013, early online.
-
(2013)
FEMS Microbiol Ecol
-
-
Sirisena, K.A.1
Daughney, C.J.2
Moreau-Fournier, M.3
Ryan, K.G.4
Chambers, G.K.5
-
23
-
-
84878275641
-
Speedy speciation in a bacterial microcosm: new species can arise as frequently as adaptations within a species
-
Koeppel A.F., Wertheim J.O., Barone L., Gentile N., Krizanc D., Cohan F.M. Speedy speciation in a bacterial microcosm: new species can arise as frequently as adaptations within a species. ISME J 2013, 7:1080-1091.
-
(2013)
ISME J
, vol.7
, pp. 1080-1091
-
-
Koeppel, A.F.1
Wertheim, J.O.2
Barone, L.3
Gentile, N.4
Krizanc, D.5
Cohan, F.M.6
-
24
-
-
31544448331
-
Microbial biogeography: putting microorganisms on the map
-
Martiny J.B.H., Bohannan B.J.M., Brown J.H., Colwell R.K., Fuhrman J.A., Green J.L., Horner-Devine M.C., Kane M., Krumins J.A., Kuske C.R., et al. Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol 2006, 4:102-112.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Krumins, J.A.9
Kuske, C.R.10
-
25
-
-
84865345637
-
Stochastic and deterministic assembly processes in subsurface microbial communities
-
Stegen J.C., Lin X., Konopka A.E., Fredrickson J.K. Stochastic and deterministic assembly processes in subsurface microbial communities. ISME J 2012, 6:1653-1664.
-
(2012)
ISME J
, vol.6
, pp. 1653-1664
-
-
Stegen, J.C.1
Lin, X.2
Konopka, A.E.3
Fredrickson, J.K.4
-
26
-
-
84886729239
-
Quantifying community assembly processes and identifying features that impose them
-
early online
-
Stegen J.C., Lin X., Fredrickson J.K., Chen X., Kennedy D.W., Murray C.J., Rockhold M.L., Konopka A. Quantifying community assembly processes and identifying features that impose them. ISME J 2013, early online.
-
(2013)
ISME J
-
-
Stegen, J.C.1
Lin, X.2
Fredrickson, J.K.3
Chen, X.4
Kennedy, D.W.5
Murray, C.J.6
Rockhold, M.L.7
Konopka, A.8
-
27
-
-
38949131277
-
Depth-resolved quantification of anaerobic toluene degraders and aquifer microbial community patterns in distinct redox zones of a tar oil contaminant plume
-
Winderl C., Anneser B., Griebler C., Meckenstock R.U., Lueders T. Depth-resolved quantification of anaerobic toluene degraders and aquifer microbial community patterns in distinct redox zones of a tar oil contaminant plume. Appl Environ Microbiol 2008, 74:792-801.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 792-801
-
-
Winderl, C.1
Anneser, B.2
Griebler, C.3
Meckenstock, R.U.4
Lueders, T.5
-
28
-
-
84875791297
-
Ecology and biogeography of bacterial communities associated with chloroethene-contaminated aquifers
-
Rossi P., Shani N., Kohler F., Imfeld G., Hollinger C. Ecology and biogeography of bacterial communities associated with chloroethene-contaminated aquifers. Front Microbiol 2012, 3:260.
-
(2012)
Front Microbiol
, vol.3
, pp. 260
-
-
Rossi, P.1
Shani, N.2
Kohler, F.3
Imfeld, G.4
Hollinger, C.5
-
29
-
-
34848923790
-
Subterranean biogeography: what have we learned from molecular techniques?
-
Porter M.L. Subterranean biogeography: what have we learned from molecular techniques?. J Cave Karst Stud 2007, 69:179-186.
-
(2007)
J Cave Karst Stud
, vol.69
, pp. 179-186
-
-
Porter, M.L.1
-
30
-
-
77956592001
-
Evolution in caves: Darwin's 'wrecks of ancient life' in the molecular era
-
Juan C., Guzik M.T., Jaume D., Cooper S.J.B. Evolution in caves: Darwin's 'wrecks of ancient life' in the molecular era. Mol Ecol 2010, 19:3865-3880.
-
(2010)
Mol Ecol
, vol.19
, pp. 3865-3880
-
-
Juan, C.1
Guzik, M.T.2
Jaume, D.3
Cooper, S.J.B.4
-
31
-
-
0345874628
-
Evolution of subterranean diving beetles (Coleoptera: Dytiscidae: Hydroporini, Bidessini) in the arid zone of Australia
-
Leys R., Watts C., Cooper S.J.B., Humphreys W.F. Evolution of subterranean diving beetles (Coleoptera: Dytiscidae: Hydroporini, Bidessini) in the arid zone of Australia. Evolution 2003, 57:2819-2834.
-
(2003)
Evolution
, vol.57
, pp. 2819-2834
-
-
Leys, R.1
Watts, C.2
Cooper, S.J.B.3
Humphreys, W.F.4
-
32
-
-
84876875373
-
Timetree of Aselloidea reveals species diversification dynamics in groundwater
-
Morvan C., Malard F., Paradis E., Lefébure T., Konecny-Dupré L., Douady C.J. Timetree of Aselloidea reveals species diversification dynamics in groundwater. Syst Biol 2013, 62:512-522.
-
(2013)
Syst Biol
, vol.62
, pp. 512-522
-
-
Morvan, C.1
Malard, F.2
Paradis, E.3
Lefébure, T.4
Konecny-Dupré, L.5
Douady, C.J.6
-
33
-
-
62949106282
-
Vicariance, dispersal and scale in the aquatic subterranean fauna of karst regions
-
Culver D.C., Pipan T., Schneider K. Vicariance, dispersal and scale in the aquatic subterranean fauna of karst regions. Freshw Biol 2007, 54:918-929.
-
(2007)
Freshw Biol
, vol.54
, pp. 918-929
-
-
Culver, D.C.1
Pipan, T.2
Schneider, K.3
-
34
-
-
77649278375
-
Ancient origin of a Western Mediterranean radiation of subterranean beetles
-
Ribera I., Fresneda J., Bucur R., Izquierdo A., Vogler A.P., Salgado J.M., Cieslak A. Ancient origin of a Western Mediterranean radiation of subterranean beetles. BMC Evolut Biol 2010, 10:29.
-
(2010)
BMC Evolut Biol
, vol.10
, pp. 29
-
-
Ribera, I.1
Fresneda, J.2
Bucur, R.3
Izquierdo, A.4
Vogler, A.P.5
Salgado, J.M.6
Cieslak, A.7
-
35
-
-
77949495007
-
Evolution underground: shedding light on the diversification of subterranean insects
-
Juan C., Emerson B.C. Evolution underground: shedding light on the diversification of subterranean insects. J Biol 2010, 9:17.
-
(2010)
J Biol
, vol.9
, pp. 17
-
-
Juan, C.1
Emerson, B.C.2
-
36
-
-
0033890619
-
Genetic diversity among Arthrobacter species collected across a heterogeneous series of terrestrial deep-subsurface sediments as determined on the basis of 16S rRNA and recA gene sequences
-
van Waasbergen L.G., Balkwill D.L., Crocker F.H., Bjornstad B.N., Miller R.V. Genetic diversity among Arthrobacter species collected across a heterogeneous series of terrestrial deep-subsurface sediments as determined on the basis of 16S rRNA and recA gene sequences. Appl Environ Microbiol 2000, 66:3454-3463.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3454-3463
-
-
van Waasbergen, L.G.1
Balkwill, D.L.2
Crocker, F.H.3
Bjornstad, B.N.4
Miller, R.V.5
-
37
-
-
32444440701
-
Environmental pollution promotes selection of microbial degradation pathways
-
van der Meer J.R. Environmental pollution promotes selection of microbial degradation pathways. Front Ecol Environ 2006, 4:35-42.
-
(2006)
Front Ecol Environ
, vol.4
, pp. 35-42
-
-
van der Meer, J.R.1
-
38
-
-
0031765099
-
Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater
-
van der Meer J.R., Werlen C., Nishino S.F., Spain J.C. Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater. Appl Environ Microbiol 1998, 64:4185-4193.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4185-4193
-
-
van der Meer, J.R.1
Werlen, C.2
Nishino, S.F.3
Spain, J.C.4
-
40
-
-
0026593622
-
Are parallel morphologies of cave organisms the result of similar selection pressure?
-
Jones R., Culver D.C., Kane T.C. Are parallel morphologies of cave organisms the result of similar selection pressure?. Evolution 1992, 46:365.
-
(1992)
Evolution
, vol.46
, pp. 365
-
-
Jones, R.1
Culver, D.C.2
Kane, T.C.3
-
41
-
-
0000561616
-
Evolution and genetics of epigean and cave Astyanax fasciatus (Characidae, Pisces): support for the neutral mutation theory
-
Wilkens H. Evolution and genetics of epigean and cave Astyanax fasciatus (Characidae, Pisces): support for the neutral mutation theory. Evolut Biol 1988, 23:367.
-
(1988)
Evolut Biol
, vol.23
, pp. 367
-
-
Wilkens, H.1
-
42
-
-
7244255752
-
Hedgehog signalling controls eye degeneration in blind cavefish
-
Yamamoto Y., Stock D.W., Jeffery W.R. Hedgehog signalling controls eye degeneration in blind cavefish. Nature 2004, 431:847.
-
(2004)
Nature
, vol.431
, pp. 847
-
-
Yamamoto, Y.1
Stock, D.W.2
Jeffery, W.R.3
-
43
-
-
0034725912
-
Central role for the lens in cave fish eye degeneration
-
Yamamoto Y., Jeffery W.R. Central role for the lens in cave fish eye degeneration. Science 2000, 289:633.
-
(2000)
Science
, vol.289
, pp. 633
-
-
Yamamoto, Y.1
Jeffery, W.R.2
-
44
-
-
29444454335
-
Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism
-
Protas M.E., Hersey C., Kochanek D., Zhou Y., Wilkens H., Jeffery W.R., Zon L.I., Borowsky R., Tabin C.J. Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism. Nat Genet 2005, 38:111.
-
(2005)
Nat Genet
, vol.38
, pp. 111
-
-
Protas, M.E.1
Hersey, C.2
Kochanek, D.3
Zhou, Y.4
Wilkens, H.5
Jeffery, W.R.6
Zon, L.I.7
Borowsky, R.8
Tabin, C.J.9
-
45
-
-
84864005141
-
Evolution of albinism in cave planthoppers by a convergent defect in the first step of melanin biosynthesis
-
Bilandzija H., Ćetković H., Jeffery W.R. Evolution of albinism in cave planthoppers by a convergent defect in the first step of melanin biosynthesis. Evolut Dev 2012, 14:203.
-
(2012)
Evolut Dev
, vol.14
, pp. 203
-
-
Bilandzija, H.1
Ćetković, H.2
Jeffery, W.R.3
-
46
-
-
29144490032
-
Regressive evolution of an eye pigment gene in independently evolved eyeless subterranean diving beetles
-
Leys R., Cooper S.J.B., Strecker U., Wilkens H. Regressive evolution of an eye pigment gene in independently evolved eyeless subterranean diving beetles. Biol Lett 2005, 1:499.
-
(2005)
Biol Lett
, vol.1
, pp. 499
-
-
Leys, R.1
Cooper, S.J.B.2
Strecker, U.3
Wilkens, H.4
-
47
-
-
85067738689
-
Evidence for repeated loss of selective constraint in rhodopsin of amblyopsid cavefishes (Teleostei: Amblyopsidae)
-
Niemiller M.L., Fitzpatrick B.M., Shah P., Schmitz L., Near T.J. Evidence for repeated loss of selective constraint in rhodopsin of amblyopsid cavefishes (Teleostei: Amblyopsidae). Evolution 2012.
-
(2012)
Evolution
-
-
Niemiller, M.L.1
Fitzpatrick, B.M.2
Shah, P.3
Schmitz, L.4
Near, T.J.5
-
48
-
-
67349146307
-
Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution
-
Yamamoto Y., Byerly M.S., Jackman W.R., Jeffery W.R. Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution. Dev Biol 2009, 330:211.
-
(2009)
Dev Biol
, vol.330
, pp. 211
-
-
Yamamoto, Y.1
Byerly, M.S.2
Jackman, W.R.3
Jeffery, W.R.4
-
49
-
-
84873473191
-
Evolutionary shift from fighting to foraging in blind cavefish through changes in the serotonin network
-
Elipot Y., Hinaux H., Callebert J., Rétaux S. Evolutionary shift from fighting to foraging in blind cavefish through changes in the serotonin network. Curr Biol 2012.
-
(2012)
Curr Biol
-
-
Elipot, Y.1
Hinaux, H.2
Callebert, J.3
Rétaux, S.4
-
50
-
-
79955040565
-
Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus
-
Protas M.E., Trontelj P., Patel N.H. Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus. Proc Natl Acad Sci 2011, 108:5707.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 5707
-
-
Protas, M.E.1
Trontelj, P.2
Patel, N.H.3
-
51
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang Z., Gerstein M., Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009, 10:63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
52
-
-
84879344080
-
Evolution of the eye transcriptome under constant darkness in Sinocyclocheilus cavefish
-
Meng F., Braasch I., Phillips J.B., Lin X., Titus T., Zhang C., Postlethwait J.H. Evolution of the eye transcriptome under constant darkness in Sinocyclocheilus cavefish. Mol Biol Evolut 2013, 30:1543.
-
(2013)
Mol Biol Evolut
, vol.30
, pp. 1543
-
-
Meng, F.1
Braasch, I.2
Phillips, J.B.3
Lin, X.4
Titus, T.5
Zhang, C.6
Postlethwait, J.H.7
-
53
-
-
0043033159
-
Present state and future prospects for groundwater ecosystems
-
Danielopol D.L., Griebler C., Gunatilaka A., Notenboom J. Present state and future prospects for groundwater ecosystems. Environ Conserv 2003, 30:104-130.
-
(2003)
Environ Conserv
, vol.30
, pp. 104-130
-
-
Danielopol, D.L.1
Griebler, C.2
Gunatilaka, A.3
Notenboom, J.4
-
54
-
-
77949542870
-
High resolution analysis of contaminated aquifer sediments and groundwater-what can be learned in terms of natural attenuation?
-
Anneser B., Pilloni G., Bayer A., Lueders T., Griebler C., Einsiedl F., Richters L. High resolution analysis of contaminated aquifer sediments and groundwater-what can be learned in terms of natural attenuation?. Geomicrobiol J 2010, 27:130-142.
-
(2010)
Geomicrobiol J
, vol.27
, pp. 130-142
-
-
Anneser, B.1
Pilloni, G.2
Bayer, A.3
Lueders, T.4
Griebler, C.5
Einsiedl, F.6
Richters, L.7
-
55
-
-
84894673388
-
Pathogenic microorganisms and viruses in groundwater
-
Krauss S., Griebler C. Pathogenic microorganisms and viruses in groundwater. Acatech Materialien 2011, 6:66.
-
(2011)
Acatech Materialien
, vol.6
, pp. 66
-
-
Krauss, S.1
Griebler, C.2
-
56
-
-
35349030830
-
Do microbial numbers count? Quantifying the regulation of biogeochemical fluxes by population size and cellular activity
-
Röling W.F.M. Do microbial numbers count? Quantifying the regulation of biogeochemical fluxes by population size and cellular activity. FEMS Microbiol Ecol 2007, 62:202-210.
-
(2007)
FEMS Microbiol Ecol
, vol.62
, pp. 202-210
-
-
Röling, W.F.M.1
-
57
-
-
73449142777
-
Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community
-
Yagi J.M., Neuhauser E.F., Ripp J.A., Mauro D.M., Madsen E.L. Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community. ISME J 2010, 4:131-143.
-
(2010)
ISME J
, vol.4
, pp. 131-143
-
-
Yagi, J.M.1
Neuhauser, E.F.2
Ripp, J.A.3
Mauro, D.M.4
Madsen, E.L.5
-
58
-
-
84876326279
-
Using stable isotope probing to characterize differences between free-living and sediment-associated microorganisms in the subsurface
-
Longnecker K., Kujawinski E.B. Using stable isotope probing to characterize differences between free-living and sediment-associated microorganisms in the subsurface. Geomicrobiol J 2013, 30:362-370.
-
(2013)
Geomicrobiol J
, vol.30
, pp. 362-370
-
-
Longnecker, K.1
Kujawinski, E.B.2
-
59
-
-
68649111370
-
A novel symbiosis between chemoautotrophic bacteria and a freshwater cave amphipod
-
Dattagupta S., Schaperdoth I., Montanari A., Mariani S., Kita N., Valley J.W., Macalady J.L. A novel symbiosis between chemoautotrophic bacteria and a freshwater cave amphipod. ISME J 2009, 3:935-943.
-
(2009)
ISME J
, vol.3
, pp. 935-943
-
-
Dattagupta, S.1
Schaperdoth, I.2
Montanari, A.3
Mariani, S.4
Kita, N.5
Valley, J.W.6
Macalady, J.L.7
-
60
-
-
84865341770
-
Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer
-
Lin X., McKinley J., Resch C.T., Kaluzny R., Lauber C.L., Fredrickson J.K., Knight R., Konopka A. Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer. ISME J 2012, 6:1665-1676.
-
(2012)
ISME J
, vol.6
, pp. 1665-1676
-
-
Lin, X.1
McKinley, J.2
Resch, C.T.3
Kaluzny, R.4
Lauber, C.L.5
Fredrickson, J.K.6
Knight, R.7
Konopka, A.8
-
61
-
-
0031107037
-
Groundwater samples do not reflect bacterial densities and activity in subsurface systems
-
Alfreider A., Krossbacher M., Psenner R. Groundwater samples do not reflect bacterial densities and activity in subsurface systems. Water Res 1997, 31:832-840.
-
(1997)
Water Res
, vol.31
, pp. 832-840
-
-
Alfreider, A.1
Krossbacher, M.2
Psenner, R.3
-
62
-
-
0037178050
-
Distribution patterns of attached and suspended bacteria in pristine and contaminated shallow aquifers studied with an in situ sediment exposure microcosm
-
Griebler C., Mindl B., Slezak D., Geiger-Kaiser M. Distribution patterns of attached and suspended bacteria in pristine and contaminated shallow aquifers studied with an in situ sediment exposure microcosm. Aquat Microb Ecol 2002, 28:117-129.
-
(2002)
Aquat Microb Ecol
, vol.28
, pp. 117-129
-
-
Griebler, C.1
Mindl, B.2
Slezak, D.3
Geiger-Kaiser, M.4
-
63
-
-
65549117515
-
Heterotrophic prokaryotic production in ultraoligotrophic alpine karst aquifers and ecological implications
-
Wilhartitz I.C., Kirschner A.K., Stadler H., Herndl G.J., Dietzel M., Latal C., Mach R.L., Farnleitner A.H. Heterotrophic prokaryotic production in ultraoligotrophic alpine karst aquifers and ecological implications. FEMS Microbiol Ecol 2009, 68:287-299.
-
(2009)
FEMS Microbiol Ecol
, vol.68
, pp. 287-299
-
-
Wilhartitz, I.C.1
Kirschner, A.K.2
Stadler, H.3
Herndl, G.J.4
Dietzel, M.5
Latal, C.6
Mach, R.L.7
Farnleitner, A.H.8
-
64
-
-
84879198024
-
Functional microbial diversity explains groundwater chemistry in a pristine aquifer
-
Flynn T.M., Sanford R.A., Ryu H., Bethke C.M., Levine A.D., Ashbolt N.J., Domingo J.W.S. Functional microbial diversity explains groundwater chemistry in a pristine aquifer. BMC Microbiol 2013, 13:146.
-
(2013)
BMC Microbiol
, vol.13
, pp. 146
-
-
Flynn, T.M.1
Sanford, R.A.2
Ryu, H.3
Bethke, C.M.4
Levine, A.D.5
Ashbolt, N.J.6
Domingo, J.W.S.7
-
65
-
-
84865778030
-
Resistance and resilience of microbial communities-temporal and spatial insurance against perturbations
-
Baho D.L., Peter H., Tranvik L.J. Resistance and resilience of microbial communities-temporal and spatial insurance against perturbations. Environ Microbiol 2012, 14:2283-2292.
-
(2012)
Environ Microbiol
, vol.14
, pp. 2283-2292
-
-
Baho, D.L.1
Peter, H.2
Tranvik, L.J.3
-
66
-
-
22744456447
-
Bacterial dynamics in spring water of alpine karst aquifers indicates the presence of stable autochthonous microbial endokarst communities
-
Farnleitner A.H., Wilhartitz I.C., Gabriela Ryzinska, Kirschner A.K.T., Stadler H., Burtscher M.M., Hornek R., Szewzyk U., Herndl G.J., Mach R.L. Bacterial dynamics in spring water of alpine karst aquifers indicates the presence of stable autochthonous microbial endokarst communities. Environ Microbiol 2005, 7:1248-1259.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1248-1259
-
-
Farnleitner, A.H.1
Wilhartitz, I.C.2
Gabriela Ryzinska3
Kirschner, A.K.T.4
Stadler, H.5
Burtscher, M.M.6
Hornek, R.7
Szewzyk, U.8
Herndl, G.J.9
Mach, R.L.10
-
67
-
-
84862331063
-
Spatio-temporal patterns of microbial communities in a hydrologically dynamic pristine aquifer
-
Zhou Y., Kellermann C., Griebler C. Spatio-temporal patterns of microbial communities in a hydrologically dynamic pristine aquifer. FEMS Microbiol Ecol 2012, 81:230-242.
-
(2012)
FEMS Microbiol Ecol
, vol.81
, pp. 230-242
-
-
Zhou, Y.1
Kellermann, C.2
Griebler, C.3
-
68
-
-
43549085303
-
Biodiversity, functional roles and ecosystem services of groundwater invertebrates
-
Boulton A.J., Fenwick G.D., Hancock P.J., Harvey M.S. Biodiversity, functional roles and ecosystem services of groundwater invertebrates. Invertebr System 2008, 22:103-116.
-
(2008)
Invertebr System
, vol.22
, pp. 103-116
-
-
Boulton, A.J.1
Fenwick, G.D.2
Hancock, P.J.3
Harvey, M.S.4
-
69
-
-
33846827227
-
Ecosystem engineering: the impact of bioturbation on biogeochemical processes in marine and freshwater benthic habitats
-
Mermillod-Blondin F., Rosenberg R. Ecosystem engineering: the impact of bioturbation on biogeochemical processes in marine and freshwater benthic habitats. Aquat Sci 2006, 68:434-442.
-
(2006)
Aquat Sci
, vol.68
, pp. 434-442
-
-
Mermillod-Blondin, F.1
Rosenberg, R.2
-
70
-
-
70350151426
-
Influence of dissolved organic matter and invertebrates on the function of microbial films in groundwater
-
Cooney T.J., Simon K.S. Influence of dissolved organic matter and invertebrates on the function of microbial films in groundwater. Microb Ecol 2009, 58:599-610.
-
(2009)
Microb Ecol
, vol.58
, pp. 599-610
-
-
Cooney, T.J.1
Simon, K.S.2
-
72
-
-
81555198359
-
Surface water linkages regulate trophic interactions in a groundwater food web
-
Foulquier A., Malard F., Mermillod-Blondin F., Montuelle B., Dolédec S., Volat B., Gibert J. Surface water linkages regulate trophic interactions in a groundwater food web. Ecosystems 2011, 14:1339-1353.
-
(2011)
Ecosystems
, vol.14
, pp. 1339-1353
-
-
Foulquier, A.1
Malard, F.2
Mermillod-Blondin, F.3
Montuelle, B.4
Dolédec, S.5
Volat, B.6
Gibert, J.7
-
73
-
-
0037108148
-
Field evidence for a protistan role in an organically-contaminated aquifer
-
Kinner N.E., Harvey R.W., Shay D.M., Metge D.W., Warren A. Field evidence for a protistan role in an organically-contaminated aquifer. Environ Sci Technol 2002, 36:4312-4318.
-
(2002)
Environ Sci Technol
, vol.36
, pp. 4312-4318
-
-
Kinner, N.E.1
Harvey, R.W.2
Shay, D.M.3
Metge, D.W.4
Warren, A.5
-
74
-
-
84875386397
-
Spatially varying complexity of bacterial and virus-like particle communities within an aquifer system
-
Roudney B., Lavery T.J., Seymour J.R., Smith R.J., Mitchell J.G. Spatially varying complexity of bacterial and virus-like particle communities within an aquifer system. Aquat Microb Ecol 2013, 68:259-266.
-
(2013)
Aquat Microb Ecol
, vol.68
, pp. 259-266
-
-
Roudney, B.1
Lavery, T.J.2
Seymour, J.R.3
Smith, R.J.4
Mitchell, J.G.5
-
75
-
-
84884931037
-
Confined aquifers as viral reservoirs
-
early online
-
Smith R.J., Jeffries T.C., Roudney B., Seymour J.R., Fitch A.J., Simons K.L., Speck P.G., Newton K., Brown M.H., Mitchell J.G. Confined aquifers as viral reservoirs. Environ Microbiol Rep 2013, early online.
-
(2013)
Environ Microbiol Rep
-
-
Smith, R.J.1
Jeffries, T.C.2
Roudney, B.3
Seymour, J.R.4
Fitch, A.J.5
Simons, K.L.6
Speck, P.G.7
Newton, K.8
Brown, M.H.9
Mitchell, J.G.10
-
76
-
-
59549085489
-
First attempts towards an integrative concept for the ecological assessment of groundwater ecosystems
-
Steube C., Richter S., Griebler C. First attempts towards an integrative concept for the ecological assessment of groundwater ecosystems. Hydrogeol J 2009, 17:23-35.
-
(2009)
Hydrogeol J
, vol.17
, pp. 23-35
-
-
Steube, C.1
Richter, S.2
Griebler, C.3
-
77
-
-
77349089145
-
The potential use of fauna and bacteria as ecological indicators for the assessment of groundwater quality
-
Stein H., Kellermann C., Schmidt S.I., Brielmann H., Steube C., Berkhoff S.E., Fuchs A., Hahn H.J., Thulin B., Griebler C. The potential use of fauna and bacteria as ecological indicators for the assessment of groundwater quality. J Environ Monit 2010, 12:242-254.
-
(2010)
J Environ Monit
, vol.12
, pp. 242-254
-
-
Stein, H.1
Kellermann, C.2
Schmidt, S.I.3
Brielmann, H.4
Steube, C.5
Berkhoff, S.E.6
Fuchs, A.7
Hahn, H.J.8
Thulin, B.9
Griebler, C.10
-
78
-
-
77955090113
-
Ecological assessment of groundwater ecosystems-vision or illusion?
-
Griebler C., Stein H., Kellermann C., Berkhoff S., Brielmann H., Schmidt S.I., Selesi D., Steube C., Fuchs A., Hahn H.J. Ecological assessment of groundwater ecosystems-vision or illusion?. Ecol Eng 2010, 36:1174-1190.
-
(2010)
Ecol Eng
, vol.36
, pp. 1174-1190
-
-
Griebler, C.1
Stein, H.2
Kellermann, C.3
Berkhoff, S.4
Brielmann, H.5
Schmidt, S.I.6
Selesi, D.7
Steube, C.8
Fuchs, A.9
Hahn, H.J.10
-
79
-
-
79959789567
-
A tiered framework for assessing groundwater ecosystem health
-
Korbel K.L., Hose G.C. A tiered framework for assessing groundwater ecosystem health. Hydrobiologia 2011, 661:329-349.
-
(2011)
Hydrobiologia
, vol.661
, pp. 329-349
-
-
Korbel, K.L.1
Hose, G.C.2
-
80
-
-
84877805356
-
The use of crustaceans as sentinel organisms to evaluate groundwater ecological quality
-
Marmonier P., Maazouzi C., Foulquier A., Navel S., François C., Hervant F., Mermillod-Blondin F., Vieney A., Barraud S., Togola A., et al. The use of crustaceans as sentinel organisms to evaluate groundwater ecological quality. Ecol Eng 2013, 57:118-132.
-
(2013)
Ecol Eng
, vol.57
, pp. 118-132
-
-
Marmonier, P.1
Maazouzi, C.2
Foulquier, A.3
Navel, S.4
François, C.5
Hervant, F.6
Mermillod-Blondin, F.7
Vieney, A.8
Barraud, S.9
Togola, A.10
-
81
-
-
84868233230
-
Ecological assessment of groundwater trophic status by using artificial substrates to monitor biofilm growth and activity
-
Mermillod-Blondin F., Foulquier A., Maazouzi C., Navel S., Negrutiu Y., Vienney A., Simon L., Marmonier P. Ecological assessment of groundwater trophic status by using artificial substrates to monitor biofilm growth and activity. Ecol Indic 2013, 25:230-238.
-
(2013)
Ecol Indic
, vol.25
, pp. 230-238
-
-
Mermillod-Blondin, F.1
Foulquier, A.2
Maazouzi, C.3
Navel, S.4
Negrutiu, Y.5
Vienney, A.6
Simon, L.7
Marmonier, P.8
-
82
-
-
84867015650
-
Stygoregions-a promising approach to a bioregional classification of groundwater systems
-
Stein H., Griebler C., Berkhoff S., Matzke D., Fuchs A., Hahn H.J. Stygoregions-a promising approach to a bioregional classification of groundwater systems. Sci Rep 2012, 2:673.
-
(2012)
Sci Rep
, vol.2
, pp. 673
-
-
Stein, H.1
Griebler, C.2
Berkhoff, S.3
Matzke, D.4
Fuchs, A.5
Hahn, H.J.6
-
83
-
-
62949229369
-
Reserve selection for conserving groundwater biodiversity
-
Michel G., Malard F., Deharveng L., Di Lorenzo T., Sket B., de Broyer C. Reserve selection for conserving groundwater biodiversity. Freshw Biol 2009, 54:861-876.
-
(2009)
Freshw Biol
, vol.54
, pp. 861-876
-
-
Michel, G.1
Malard, F.2
Deharveng, L.3
Di Lorenzo, T.4
Sket, B.5
de Broyer, C.6
-
84
-
-
66249134277
-
Stormwater sediment and bioturbation influences on hydraulic functioning, biogeochemical processes, and pollutant dynamics in laboratory infiltration systems
-
Nogaro G., Mermillod-Blondin F. Stormwater sediment and bioturbation influences on hydraulic functioning, biogeochemical processes, and pollutant dynamics in laboratory infiltration systems. Sci Tot Environ 2009, 43:3632-3638.
-
(2009)
Sci Tot Environ
, vol.43
, pp. 3632-3638
-
-
Nogaro, G.1
Mermillod-Blondin, F.2
-
85
-
-
84875278811
-
Benzo(a)pyrene inhibits the role of the bioturbator Tubifex tubifex in river sediment biogeochemistry
-
Mermillod-Blondin F., Foulquier A., Gilbert F., Navel S., Montuelle B., Bellvert F., Comte G., Grossi V., Fourel F., Lecuyer C., et al. Benzo(a)pyrene inhibits the role of the bioturbator Tubifex tubifex in river sediment biogeochemistry. Sci Tot Environ 2013, 450-451:230-241.
-
(2013)
Sci Tot Environ
, pp. 230-241
-
-
Mermillod-Blondin, F.1
Foulquier, A.2
Gilbert, F.3
Navel, S.4
Montuelle, B.5
Bellvert, F.6
Comte, G.7
Grossi, V.8
Fourel, F.9
Lecuyer, C.10
-
86
-
-
84919719343
-
Ecology and management of the hyporheic zone: stream-groundwater interactions of running waters and their floodplains
-
Boulton A.J., Datry T., Kasahara T., Mutz M., Stanford J.A. Ecology and management of the hyporheic zone: stream-groundwater interactions of running waters and their floodplains. J North Am Benthol Soc 2010, 29:26-40.
-
(2010)
J North Am Benthol Soc
, vol.29
, pp. 26-40
-
-
Boulton, A.J.1
Datry, T.2
Kasahara, T.3
Mutz, M.4
Stanford, J.A.5
-
87
-
-
76149146039
-
Nanosized iron oxides strongly enhance microbial iron reduction
-
Bosch J., Heister K., Hofmann T., Meckenstock R.U. Nanosized iron oxides strongly enhance microbial iron reduction. Appl Environ Microbiol 2010, 76:184-289.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 184-289
-
-
Bosch, J.1
Heister, K.2
Hofmann, T.3
Meckenstock, R.U.4
-
88
-
-
84884210284
-
Iron oxide nanoparticles in geomicrobiology: from biogeochemistry to bioremediation
-
Braunschweig J., Bosch J., Meckenstock R.U. Iron oxide nanoparticles in geomicrobiology: from biogeochemistry to bioremediation. New Biotechnol 2013, 30:793-802.
-
(2013)
New Biotechnol
, vol.30
, pp. 793-802
-
-
Braunschweig, J.1
Bosch, J.2
Meckenstock, R.U.3
-
89
-
-
33749557645
-
Freezing or supercooling: how does an aquatic subterranean crustacean survive exposures at subzero temperatures?
-
Issartel J., Voituron Y.V.O., Baudot A., Guillot G., Ruaud J.-P., Renault D., Vernon P., Hervant F. Freezing or supercooling: how does an aquatic subterranean crustacean survive exposures at subzero temperatures?. J Exp Biol 2006, 209:3469-3475.
-
(2006)
J Exp Biol
, vol.209
, pp. 3469-3475
-
-
Issartel, J.1
Voituron, Y.V.O.2
Baudot, A.3
Guillot, G.4
Ruaud, J.-P.5
Renault, D.6
Vernon, P.7
Hervant, F.8
-
90
-
-
84876443686
-
Preventive antioxidant responses to extreme oxygen level fluctuation in a subterranean crustacean
-
Lawniczak M., Romestaing C., Roussel D., Maazouzi C., Renault D., Hervant F. Preventive antioxidant responses to extreme oxygen level fluctuation in a subterranean crustacean. Compar Biochem Physiol A 2013, 165:299-303.
-
(2013)
Compar Biochem Physiol A
, vol.165
, pp. 299-303
-
-
Lawniczak, M.1
Romestaing, C.2
Roussel, D.3
Maazouzi, C.4
Renault, D.5
Hervant, F.6
-
91
-
-
0031424805
-
Comparative study on the behavioral, ventilator and respiratory responses of hypogean and epigean crustaceans to long-term starvation and subsequent feeding
-
Hervant F., Mathieu J., Barre H.S.,K., Pinon C. Comparative study on the behavioral, ventilator and respiratory responses of hypogean and epigean crustaceans to long-term starvation and subsequent feeding. Compar Biochem Physiol A 1997, 118:1277-1283.
-
(1997)
Compar Biochem Physiol A
, vol.118
, pp. 1277-1283
-
-
Hervant, F.1
Mathieu, J.2
Barre, H.S.K.3
Pinon, C.4
-
92
-
-
12744277871
-
Evolutionary and mechanistic theories of aging
-
Hughes K.A., Reynolds R.M. Evolutionary and mechanistic theories of aging. Annu Rev Entomol 2005, 50:421-445.
-
(2005)
Annu Rev Entomol
, vol.50
, pp. 421-445
-
-
Hughes, K.A.1
Reynolds, R.M.2
-
93
-
-
84859421389
-
Phreatic groundwater ecosystems: research frontiers for freshwater ecology
-
Larned S.T. Phreatic groundwater ecosystems: research frontiers for freshwater ecology. Freshw Biol 2012, 57:885-906.
-
(2012)
Freshw Biol
, vol.57
, pp. 885-906
-
-
Larned, S.T.1
-
94
-
-
84877913778
-
A road map for integrating eco-evolutionary processes into biodiversity models
-
Thuiller W., Münkemüller T., Lavergne S., Mouillot D., Mouquet N., Schiffers K., Gravel D. A road map for integrating eco-evolutionary processes into biodiversity models. Ecol Lett 2013, 16:94-105.
-
(2013)
Ecol Lett
, vol.16
, pp. 94-105
-
-
Thuiller, W.1
Münkemüller, T.2
Lavergne, S.3
Mouillot, D.4
Mouquet, N.5
Schiffers, K.6
Gravel, D.7
-
95
-
-
78149404626
-
Biodiversity and climate change: integrating evolutionary and ecological responses of species and communities
-
Lavergne S., Mouquet N., Thuiller W., Ronce O. Biodiversity and climate change: integrating evolutionary and ecological responses of species and communities. Annu Rev Ecol Evolut System 2010, 41:321-350.
-
(2010)
Annu Rev Ecol Evolut System
, vol.41
, pp. 321-350
-
-
Lavergne, S.1
Mouquet, N.2
Thuiller, W.3
Ronce, O.4
-
96
-
-
84871239230
-
What is conservation science?
-
Kareiva P., Marvier M. What is conservation science?. BioScience 2012, 62:962-969.
-
(2012)
BioScience
, vol.62
, pp. 962-969
-
-
Kareiva, P.1
Marvier, M.2
|