메뉴 건너뛰기




Volumn 30, Issue 4, 2014, Pages 576-577

Forqs: Forward-in-time simulation of recombination, quantitative traits and selection

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; COMPUTER PROGRAM; COMPUTER SIMULATION; GENETIC RECOMBINATION; GENETIC SELECTION; GENETICS; HAPLOTYPE; HUMAN; MOLECULAR EVOLUTION; POPULATION GENETICS; QUANTITATIVE TRAIT LOCUS;

EID: 84894593141     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt712     Document Type: Article
Times cited : (29)

References (19)
  • 1
    • 84880026546 scopus 로고    scopus 로고
    • Rapid forward-in-time simulation at the chromosome and genome level
    • Aberer, A.J. and Stamatakis, A. (2013) Rapid forward-in-time simulation at the chromosome and genome level. BMC Bioinformatics, 14, 216.
    • (2013) BMC Bioinformatics , vol.14 , pp. 216
    • Aberer, A.J.1    Stamatakis, A.2
  • 2
    • 43849112140 scopus 로고    scopus 로고
    • GENOMEPOP: A program to simulate genomes in populations
    • Carvajal-Rodriguez, A. (2008) GENOMEPOP: a program to simulate genomes in populations. BMC Bioinformatics, 9, 223.
    • (2008) BMC Bioinformatics , vol.9 , pp. 223
    • Carvajal-Rodriguez, A.1
  • 3
    • 52449110029 scopus 로고    scopus 로고
    • Fregene: Simulation of realistic sequence-level data in populations and ascertained samples
    • Chadeau-Hyam, M. et al. (2008) Fregene: simulation of realistic sequence-level data in populations and ascertained samples. BMC Bioinformatics, 9, 364.
    • (2008) BMC Bioinformatics , vol.9 , pp. 364
    • Chadeau-Hyam, M.1
  • 4
    • 61449135985 scopus 로고    scopus 로고
    • Fast and flexible simulation of DNA sequence data
    • Chen, G.K. et al. (2009) Fast and flexible simulation of DNA sequence data. Genome Res., 19, 136-142.
    • (2009) Genome Res. , vol.19 , pp. 136-142
    • Chen, G.K.1
  • 5
    • 77955381733 scopus 로고    scopus 로고
    • MSMS: A coalescent simulation program including recombination, demographic structure and selection at a single locus
    • Ewing, G. and Hermisson, J. (2010)MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus. Bioinformatics, 26, 2064-2065.
    • (2010) Bioinformatics , vol.26 , pp. 2064-2065
    • Ewing, G.1    Hermisson, J.2
  • 6
    • 79954469204 scopus 로고    scopus 로고
    • Fastsimcoal: A continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
    • Excoffier, L. and Foll, M. (2011) Fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics, 27, 1332-1334.
    • (2011) Bioinformatics , vol.27 , pp. 1332-1334
    • Excoffier, L.1    Foll, M.2
  • 7
    • 84886897777 scopus 로고    scopus 로고
    • Efficient in silico chromosomal representation of populations via indexing ancestral genomes
    • Haiminen, N. et al. (2013) Efficient in silico chromosomal representation of populations via indexing ancestral genomes. Algorithms, 6, 430-441.
    • (2013) Algorithms , vol.6 , pp. 430-441
    • Haiminen, N.1
  • 8
    • 56649111423 scopus 로고    scopus 로고
    • A flexible forward simulator for populations subject to selection and demography
    • Hernandez, R.D. (2008) A flexible forward simulator for populations subject to selection and demography. Bioinformatics, 24, 2786-2787.
    • (2008) Bioinformatics , vol.24 , pp. 2786-2787
    • Hernandez, R.D.1
  • 9
    • 84855963371 scopus 로고    scopus 로고
    • Computer simulations: Tools for population and evolutionary genetics
    • Hoban, S. et al. (2011) Computer simulations: tools for population and evolutionary genetics. Nat. Rev. Genet., 13, 110-122.
    • (2011) Nat. Rev. Genet. , vol.13 , pp. 110-122
    • Hoban, S.1
  • 10
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a wright-fisher neutral model of genetic variation
    • Hudson, R.R. (2002) Generating samples under a wright-fisher neutral model of genetic variation. Bioinformatics, 18, 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 11
    • 0023760376 scopus 로고
    • The coalescent process in models with selection and recombination
    • Hudson, R.R. and Kaplan, N.L. (1988) The coalescent process in models with selection and recombination. Genetics, 120, 831-840.
    • (1988) Genetics , vol.120 , pp. 831-840
    • Hudson, R.R.1    Kaplan, N.L.2
  • 12
    • 49549118474 scopus 로고    scopus 로고
    • ForSim: A tool for exploring the genetic architecture of complex traits with controlled truth
    • Lambert, B.W. et al. (2008) ForSim: a tool for exploring the genetic architecture of complex traits with controlled truth. Bioinformatics, 24, 1821-1822.
    • (2008) Bioinformatics , vol.24 , pp. 1821-1822
    • Lambert, B.W.1
  • 13
    • 84881041428 scopus 로고    scopus 로고
    • SLiM: Simulating evolution with selection and linkage
    • Messer, P.W. (2013) SLiM: simulating evolution with selection and linkage. Genetics, 194, 1037-1039.
    • (2013) Genetics , vol.194 , pp. 1037-1039
    • Messer, P.W.1
  • 14
    • 46249111534 scopus 로고    scopus 로고
    • QuantiNemo: An individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation
    • Neuenschwander, S. et al. (2008) QuantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation. Bioinformatics, 24, 1552-1553.
    • (2008) Bioinformatics , vol.24 , pp. 1552-1553
    • Neuenschwander, S.1
  • 15
    • 77955901730 scopus 로고    scopus 로고
    • TreesimJ: A flexible, forward time population genetic simulator
    • O'Fallon, B. (2010) TreesimJ: a flexible, forward time population genetic simulator. Bioinformatics, 26, 2200-2201.
    • (2010) Bioinformatics , vol.26 , pp. 2200-2201
    • O'Fallon, B.1
  • 16
    • 45849134174 scopus 로고    scopus 로고
    • Exploring population genetic models with recombination using efficient forward-time simulations
    • Padhukasahasram, B. et al. (2008) Exploring population genetic models with recombination using efficient forward-time simulations. Genetics, 178, 2417-2427.
    • (2008) Genetics , vol.178 , pp. 2417-2427
    • Padhukasahasram, B.1
  • 17
    • 24644505748 scopus 로고    scopus 로고
    • SimuPOP: A forward-time population genetics simulation environment
    • Peng, B. and Kimmel, M. (2005) simuPOP: a forward-time population genetics simulation environment. Bioinformatics, 21, 3686-3687.
    • (2005) Bioinformatics , vol.21 , pp. 3686-3687
    • Peng, B.1    Kimmel, M.2
  • 18
    • 80052249755 scopus 로고    scopus 로고
    • Recombination rates in admixed individuals identified by ancestry-based inference
    • Wegmann, D. et al. (2011) Recombination rates in admixed individuals identified by ancestry-based inference. Nat. Genet., 43, 847-853.
    • (2011) Nat. Genet. , vol.43 , pp. 847-853
    • Wegmann, D.1
  • 19
    • 84855457614 scopus 로고    scopus 로고
    • An overview of population genetic data simulation
    • Yuan, X. et al. (2012) An overview of population genetic data simulation. J. Comput. Biol., 19, 42-54.
    • (2012) J. Comput. Biol. , vol.19 , pp. 42-54
    • Yuan, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.