The product of microbial uranium reduction includes multiple species with U(IV)-phosphate coordination

Geochimica et Cosmochimica Acta

Volumn 131, Issue , 2014, Pages 115-127

  Alessi, Daniel S ^a,e   Lezama Pacheco, Juan S ^b   Stubbs, Joanne E ^b,f   Janousch, Markus ^c   Bargar, John R ^b   Persson, Per ^d   Bernier Latmani, Rizlan ^a  

^a EPFL   (Switzerland)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^c PAUL SCHERRER INSTITUTE   (Switzerland)

^d UMEÅ UNIVERSITY   (Sweden)

^e UNIVERSITY OF ALBERTA   (Canada)

^f UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84894447255     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2014.01.005     Document Type: Article

References (57)

1. 2 in products of U(VI) reduction. Environ. Sci. Technol. 2012, 46:6150-6157.
2. Alessi D.S., Uster B., Borca C.N., Grolimund D., Bernier-Latmani R. Beam induced oxidation of monomeric U(IV) species. J. Synchrotron Radiat. 2013, 20:197-199.
3. Bargar J.R., Bernier-Latmani R., Giammar D.E., Tebo B.M. Biogenic uraninite nanoparticles and their importance for uranium remediation. Elements 2008, 4(6):407-412.
4. Bargar J.R., Williams K.H., Campbell K.M., Long P.E., Stubbs J.E., Suvorova E., Lezama-Pacheco J.S., Alessi D.S., Stylo M., Webb S.M., Davis J.A., Giammar D.E., Blue L.Y., Bernier-Latmani R. Uranium redox transition pathways in acetate-amended sediments. Proc. Natl. Acad. Sci. USA 2013, 110(12):4506-4511.
5. Bencheikh-Latmani R., Middleton Williams S., Haucke L., Criddle C.S., Wu L., Zhou J., Tebo B.M. Global transcriptional profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) reduction. Appl. Environ. Microbiol. 2005, 71:7453-7460.
6. Bernier-Latmani R., Veeramani H., Dalla Vecchia E., Junier P., Lezama-Pacheco J.S., Suvorova E.I., Sharp J.O., Wigginton N.S., Bargar J.R. Non-uraninite products of microbial U(VI) reduction. Environ. Sci. Technol. 2010, 44:9456-9462.
7. Bernier-Latmani R., Shao P.P., Comolli L.R., Stylo M., Alessi D.S., Bargar J.R. Extracellular polymeric substances modulate the product of uranium biomineralization. Mineral. Mag. 2013, 77:693.
8. Boyanov M.I., Fletcher K.E., Kwon M.J., Rui X., O'Loughlin E.J., Löffler F.E., Kemner K.M. Solution and microbial controls on the formation of reduced U(IV) species. Environ. Sci. Technol. 2011, 45:8336-8344.
9. Brandes J.A., Ingall E., Paterson D. Characterization of minerals and organic phosphorus species in marine sediments using soft X-ray fluorescence spectromicroscopy. Mar. Chem. 2007, 103:250-265.
10. Burgos W.D., McDonough J.T., Senko J.M., Zhang G.X., Dohnalkova A.C., Kelly S.D., Gorby Y., Kemner K.M. Characterization of uraninite nanoparticles produced by Shewanella oneidensis MR-1. Geochim. Cosmochim. Acta 2008, 72:4901-4915.
11. Burns P.C. The crystal chemistry of uranium. Uranium: Mineralogy, Chemistry and the Environment 1999, 23-90. Mineralogical Society of America, Washington, DC. P.C. Burns, R. Finch (Eds.).
12. Campbell K.M., Davis J.A., Bargar J., Giammar D., Bernier-Latmani R., Kukkadapu R., Williams K.H., Veeramani H., Ulrich K.-U., Stubbs J., Yabusaki S., Figueroa L., Lesher E., Wilkins M.J., Peacock A., Long P.E. Composition, stability, and measurement of reduced uranium phases for groundwater bioremediation at Old Rifle, CO. Appl. Geochem. 2011, 26:S167-S169.
13. Cao B., Shi L., Brown R.N., Xiong Y., Fredrickson J.K., Romine M.F., Marshall M.J., Lipton M.S., Beyenal H. Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics. Environ. Microbiol. 2011, 13:1018-1031.
14. Cerrato J.M., Ashner M.N., Alessi D.S., Lezama-Pacheco J.S., Bernier-Latmani R., Bargar J.R., Giammar D.E. Relative reactivity of biogenic and chemogenic uraninite and biogenic noncrystalline U(IV). Environ. Sci. Technol. 2013, 47:9756-9763.
15. Chakraborty S., Favre F., Banerjee D., Scheinost A.C., Mullet M., Ehrhardt J.-J., Brendle J., Vidal L., Charlet L. U(VI) sorption and reduction by Fe(II) sorbed on montmorillonite. Environ. Sci. Technol. 2010, 44:3779-3785.
16. Cologgi D.L., Lampa-Pastirk S., Speers A.M., Kelly S.D., Reguera G. Extracellular reduction of uranium via Geobacter conductive pili as a protective cellular mechanism. Proc. Natl. Acad. Sci. USA 2011, 108:15248-15252.
17. Flemming H.-C., Neu T.R., Wozniak D.J. The EPS matrix: the "House of Biofilm Cells". J. Bacteriol. 2007, 189:7945-7947.
18. Flemming H.-C., Wingender J. The biofilm matrix. Nat. Rev. Microbiol. 2010, 8:623-633.
19. Fletcher K.E., Boyanov M.I., Thomas S.H., Wu Q.Z., Kemner K.M., Löffler F.E. U(VI) reduction to mononuclear U(IV) by Desulfitobacterium species. Environ. Sci. Technol. 2010, 44:4705-4709.
20. Franke R., Hormes J. The P K-near edge absorption spectra of phosphates. Physica B 1995, 216:85-95.
21. George G.N. X-ray absorption spectroscopy of light elements in biological systems. Curr. Opin. Struct. Biol. 1993, 3:780-784.
22. Hesterberg D. Macroscale chemical properties and X-ray absorption spectroscopy of soil phosphorus. Synchrotron-Based Techniques in Soils and Sediments 2010, 313-356. Elsevier, Amsterdam, Netherlands. B. Singh, M. Gräfe (Eds.).
23. Ingall E.D., Brandes J.A., Diaz J.M., de Jonge M.D., Paterson D., McNulty I., Elliott W.C., Northrup P. Phosphorus K-edge XANES spectroscopy of mineral standards. J. Synchrotron Radiat. 2011, 18:189-197.
24. Jeon B.-H., Dempsey B.A., Burgos W.D., Barnett M.O., Roden E.E. Chemical reduction of U(VI) by Fe(II) at the solid-water interface using natural and synthetic Fe(III) oxides. Environ. Sci. Technol. 2005, 39:5642-5649.
25. Jiang W., Saxena A., Song B., Ward B.B., Beveridge T.J., Myneni S.C.B. Elucidation of functional groups on gram-positive and gram-negative bacterial surfaces using infrared spectroscopy. Langmuir 2004, 20:11433-11442.
26. Kelly S.D., Hesterberg D., Ravel B. Analysis of soils and minerals using X-ray absorption spectroscopy. Methods of Soil Analysis. Part 5. Mineralogical Methods 2008, 387-463. Soil Sci. Soc. Am., Madison, WI. A.L. Ulery, R. Drees (Eds.).
27. Khijniak T.V., Slobodkin A.I., Coker V., Renshaw J.C., Livens F.R., Bonch-Osmolovskaya E.A., Birkeland N.-K., Medvedeva-Lyalikova N.N., Lloyd J.R. Reduction of uranium(VI) phosphate during growth of the thermophilic bacterium Thermoterrabacterium ferrireducens. Appl. Environ. Microbiol. 2005, 71:6423-6426.
28. Kim J.-G., Park Y.-S., Ha Y.-K., Song K. Infrared spectra of uranium oxides measured by ATR-FTIR. J. Nucl. Sci. Technol. 2012, 46:1188-1192.
29. Korenevsky A.A., Vinogradov E., Gorby Y., Beveridge T.J. Characterization of the lipopolysaccharides and capsules of Shewanella spp. Appl. Environ. Microbiol. 2002, 68:4653-4657.
30. Langley S., Beveridge T.J. Effect of O-side-chain-lipopolysaccharide chemistry on metal binding. Appl. Environ. Microbiol. 1999, 65:489-498.
31. Latta D.E., Boyanov M.I., Kemner K.M., O'Loughlin E.J., Scherer M.M. Abiotic reduction of uranium by Fe(II) in soil. Appl. Geochem. 2012, 27:1512-1524.
32. Leone L., Ferri D., Manfredi C., Persson P., Shchukarev A., Sjöberg S., Loring J. Modeling the acid-base properties of bacterial surfaces: a combined spectroscopic and potentiometric study of the Gram-positive bacterium Bacillus subtilis. Environ. Sci. Technol. 2007, 41:6465-6471.
33. Lovley D.R., Phillips E.J.P., Gorby Y.A., Landa E.R. Microbial reduction of uranium. Nature 1991, 350:413-416.
34. Lovley D.R., Phillips E.J.P. Reduction of uranium by Desulfovibrio desulfuricans. Appl. Environ. Microbiol. 1992, 58:850-856.
35. Lovley D.R. Dissimilatory metal reduction. Annu. Rev. Microbiol. 1993, 47:263-290.
36. McCrate O.A., Zhou X., Reichhard C., Cegelski L. Sum of the parts: composition and architecture of the bacterial extracellular matrix. J. Mol. Biol. 2013, 425:4286-4294.
37. 2 nanoparticles. Environ. Sci. Technol. 2003, 37:721-727.
38. 10). J. Solid State Chem. 2003, 172:66-72.
39. Ravel B., Newville M. Athena, artemis, hephaestus: data analysis for X-ray absorption spectroscopy using IFEFFIT. J. Synchrotron Radiat. 2005, 12:537-541.
40. Ray A.E., Bargar J.R., Sivaswamy V., Dohnalkova A., Fujita Y., Peyton B.M., Magnuson T.S. Evidence for multiple modes of uranium immobilization by an anaerobic bacterium. Geochim. Cosmochim. Acta 2011, 75:2684-2695.
41. Rehr J.J., Albers R.C., Zabinsky S.I. High-order multiple-scattering calculations of X-ray-absorption fine-structure. Phys. Rev. Lett. 1992, 69:3397-3400.
42. Rui X., Kwon M.J., O'Loughlin E.J., Dunham-Cheatham S., Fein J.B., Bunker B., Kemner K.M., Boyanov M.I. Bioreduction of hydrogen uranyl phosphate: mechanisms and U(IV) products. Environ. Sci. Technol. 2013, 47:5668-5678.
43. Schofield E.J., Veeramani H., Sharp J.O., Suvorova E., Bernier-Latmani R., Mehta A., Stahlman J., Webb S.M., Clark D.L., Conradson S.D., Ilton E.S., Bargar J.R. Structure of biogenic uraninite produced by Shewanella oneidensis strain MR-1. Environ. Sci. Technol. 2008, 42:7898-7904.
44. Senko J.M., Kelly S.D., Dohnalkova A.C., McDonough J.T., Kemner K.M., Burgos W.D. The effect of U(VI) bioreduction kinetics on subsequent reoxidation of biogenic U(IV). Geochim. Cosmochim. Acta 2007, 71:4644-4654.
45. Sharp J.O., Lezama-Pacheco J.S., Schofield E.J., Junier P., Ulrich K.-U., Chinni S., Veeramani H., Margot-Roquier C., Webb S.M., Tebo B.M., Giammar D.E., Bargar J.R., Bernier-Latmani R. Uranium speciation and stability after reductive immobilization in aquifer sediments. Geochim. Cosmochim. Acta 2011, 75:6497-6510.
46. Sheng L., Szymanowksi J., Fein J.B. The effects of uranium speciation on the rate of U(VI) reduction by Shewanella oneidensis MR-1. Geochim. Cosmochim. Acta 2011, 75:3558-3567.
47. Sivaswamy V., Boyanov M.I., Peyton B.M., Viamajala S., Gerlach R., Apel W.A., Sani R.K., Dohnalkova A., Kemner K.M., Borch T. Multiple mechanisms of uranium immobilization by Cellulomonas sp. strain ES6. Biotechnol. Bioeng. 2011, 108:264-276.
48. Stylo M., Alessi D.S., Shao P.P.-Y., Lezama-Pacheco J., Bargar J., Bernier-Latmani R. Biogeochemical controls on the product of microbial U(VI) reduction. Environ. Sci. Technol. 2013, 47:12351-12358.
49. Toor G.S., Hunger S., Peak J.D., Sims J.T., Sparks D.L. Advances in the characterization of phosphorus in organic wastes: environmental and agronomic applications. Adv. Agron. 2006, 89:1-72.
50. Veeramani H., Alessi D.S., Suvorova E.I., Lezama-Pacheco J.S., Stubbs J.E., Sharp J.O., Dippon U., Kappler A., Bargar J.R., Bernier-Latmani R. Products of abiotic U(VI) reduction by biogenic magnetite and vivianite. Geochim. Cosmochim. Acta 2011, 75:2512-2528.
51. Veeramani H., Scheinost A.C., Monsegue N., Qafoku N.P., Kukkapadu R., Newville M., Lanzirotti A., Pruden A., Murayama M., Hochella M.F. Abiotic reductive immobilization of U(VI) by biogenic mackinawite. Environ. Sci. Technol. 2013, 47:2361-2369.
52. Vinogradov E., Korenevsky A., Beveridge T.J. The structure of the rough-type lipopolysaccharide from Shewanella oneidensis MR-1, containing 8-amino-8-deoxy-Kdo and an open-chain form of 2-acetamido-2-deoxy-D-galactose. Carbohyd. Res. 2003, 338:1991-1997.
53. Wall J.D., Krumholz L.R. Uranium reduction. Annu. Rev. Microbiol. 2006, 60:149-166.
54. Wang H., Hollywood K., Jarvis R.M., Lloyd J.R., Goodacre R. Penotypic characterization of Shewanella oneidensis MR-1 by using Fourier transform infrared spectroscopy and high-performance liquid chromatography analyses. Appl. Environ. Microbiol. 2010, 76:6266-6276.
55. Webb S.M. SIXPACK: a graphical user interface for XAS analysis using IFEFFIT. Phys. Scripta 2005, T115:1011-1014.
56. Yeh H.Y., Price R.M., Jacobs D.M. Use of o-phthalaldehyde to detect O-phosphorylethanolamine in bacterial lipopolysaccharide. AMPIS 1992, 100:503-508.
57. Zhang G., Burgos W.D., Senko J.M., Bishop M.E., Dong H., Boyanov M.I., Kemner K.M. Microbial reduction of chlorite and uranium followed by air oxidation. Chem. Geol. 2011, 238:242-250.