Development of a high angular resolution diffusion imaging human brain template

NeuroImage

Volumn 91, Issue , 2014, Pages 177-186

  Varentsova, Anna ^a   Zhang, Shengwei ^b   Arfanakis, Konstantinos ^b,c,d  

^a ILLINOIS INSTITUTE OF TECHNOLOGY   (United States)

^b Illinois Institute of Technology   (United States)

^c RUSH UNIVERSITY MEDICAL CENTER   (United States)

^d RUSH UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

Brain; Fiber orientation distribution; HARDI; High angular resolution diffusion imaging; Template; Turboprop

Indexed keywords

BRAIN; FIBER ORIENTATION DISTRIBUTION; HARDI; HIGH ANGULAR RESOLUTION DIFFUSION IMAGING; TEMPLATE; TURBOPROP;

ADULT; ALGORITHMS; ARTIFACTS; ATLASES AS TOPIC; BRAIN; BRAIN MAPPING; CORPUS CALLOSUM; DATABASES, FACTUAL; DIFFUSION MAGNETIC RESONANCE IMAGING; DIFFUSION TENSOR IMAGING; FEMALE; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MALE; NERVE FIBERS; PYRAMIDAL TRACTS; REPRODUCIBILITY OF RESULTS; YOUNG ADULT;

EID: 84894308934     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2014.01.009     Document Type: Article

References (50)

1. Adluru N., Zhang H., Fox A.S., Shelton S.E., Ennis C.M., Bartosic A.M., Oler J.A., Tromp do P.M., Zakszewski E., Gee J.C., Kalin N.H., Alexander A.L. A diffusion tensor brain template for rhesus macaques. Neuroimage 2012, 59(1):306-318.
2. Alexander D.C., Barker G.J., Arridge S.R. Detection and modeling of non-Gaussian apparent diffusion coefficient profiles in human brain data. Magn. Reson. Med. 2002, 48:331-340.
3. Anderson A.W. Measurement of fiber orientation distributions using high angular resolution diffusion imaging. Magn. Reson. Med. 2005, 54:1194-1206.
4. Ardekani B.A., Guckemus S., Bachman A., Hoptman M.J., Wojtaszek M., Nierenberg J. Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans. J. Neurosci. Methods 2005, 42:67-76.
5. Arfanakis K., Gui M.Z., Lazar M. White matter tractography by means of turboprop diffusion tensor imaging. Ann. N. Y. Acad. Sci. 2005, 1064:78-87.
6. Basser P.J., Pierpaoli C. Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J. Magn. Reson. B 1996, 111:209-219.
7. Basser P.J., Mattiello J., Lebihan D. Estimation of the effective self-diffusion tensor from the NMR spin-echo. J. Magn. Reson. B 1994, 103:247-254.
8. Borman S., Stevenson R.L. Spatial resolution enhancement of low-resolution image sequences: a comprehensive review with directions for future research. Technical report 1998, Department of Electrical Engineering, University of Notre Dame, Notre Dame, Indiana, USA.
9. Bouix S., R.Y., Sabuncu M. Building an average population HARDI atlas. Med Image Comput Comput Assist Interv, Proc of the Workshop on Computational Diffusion MRI 2010.
10. Caan M., Sage C., van der Graaf M., Grimbergen C., Sunaert S., van Vliet L., Vos F. Dual tensor atlas generation based on a cohort of coregistered non-HARDI datasets. Med. Image Comput. Comput. Assist. Interv. 2009, 12:869-876.
11. Descoteaux M., Deriche R., Le Bihan D., Mangin J.F., Poupon C. Multiple q-shell diffusion propagator imaging. Med. Image Anal. 2011, 15:603-621.
12. Duclap D., Schmitt B., Lebois A., Guevara P., Zhang H., Longo Dos Santos C., Le Bihan D., Mangin J., Poupon C. Towards a super-resolution CONNECT/ARCHI atlas of the white matter connectivity. Proc Int Soc Magn Reson Med, Salt Lake City, Utah 2013, 3153.
13. Elad M., Feuer A. Restoration of a single superresolution image from several blurred, noisy, and undersampled measured images. IEEE Trans. Image Process. 1997, 6:1646-1658.
14. Gray H. Anatomy of the Human Body 1918, Lea & Febiger, Philadelphia, PA.
15. Gui M.Z., Peng H.L., Carew J.D., Lesniak M.S., Arfanakis K. A tractography comparison between turboprop and spin-echo echo-planar diffusion tensor imaging. Neuroimage 2008, 42:1451-1462.
16. Hasan K.M., Parker D.L., Alexander A.L. Comparison of gradient encoding schemes for diffusion-tensor MRI. J. Magn. Reson. Imaging 2001, 13:769-780.
17. Hasan K.M., Ewing-Cobbs L., Kramer L.A., Fletcher J.M., Narayana P.A. Diffusion tensor quantification of the macrostructure and microstructure of human midsagittal corpus callosum across the lifespan. NMR Biomed. 2008, 21:1094-1101.
18. Hess C.P., Mukherjee P., Han E.T., Xu D., Vigneron D.B. Q-ball reconstruction of multimodal fiber orientations using the spherical harmonic basis. Magn. Reson. Med. 2006, 56:104-117.
19. Jeurissen B., Leemans A., Jones D.K., Tournier J.D., Sijbers J. Probabilistic fiber tracking using the residual bootstrap with constrained spherical deconvolution. Hum. Brain Mapp. 2011, 32:461-479.
20. Jeurissen B., Leemans A., Tournier J.D., Jones D.K., Sijbers J. Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging. Hum. Brain Mapp. 2012, 34(11):2747-2766. (in print).
21. Kaden E., Knosche T.R., Anwander A. Parametric spherical deconvolution: inferring anatomical connectivity using diffusion MR imaging. Neuroimage 2007, 37:474-488.
22. Le Bihan D., Breton E. In vivo magnetic-resonance imaging of diffusion. C. R. Acad. Sci. Paris 1985, 15:1109-1112.
23. Mazziotta J.C., Toga A.W., Evans A., Fox P., Lancaster J. A probabilistic atlas of the human brain - theory and rationale for its development. Neuroimage 1995, 2:89-101.
24. Merboldt K.D., Hanicke W., Frahm J. Self-diffusion NMR imaging using stimulated echoes. J. Magn. Reson. 1985, 64:479-486.
25. Mori S., Oishi K., Jiang H., Jiang L., Li X., Akhter K., Hua K., Faria A.V., Mahmood A., Woods R., Toga A.W., Pike G.B., Neto P.R., Evans A., Zhang J., Huang H., Miller M.I., van Zijl P., Mazziotta J. Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template. Neuroimage 2008, 40:570-582.
26. Papadakis N.G., Murrills C.D., Hall L.D., Huang C.L., Adrian Carpenter T. Minimal gradient encoding for robust estimation of diffusion anisotropy. Magn. Reson. Imaging 2000, 18:671-679.
27. Park S., Park M., Kang M. Super-resolution image reconstruction: a technical overview. IEEE Signal Process. Mag. 2003, 20:21-36.
28. Patel V., Dinov I.D., Van Horn J.D., Thompson P.M., Toga A.W. LONI MiND: metadata in NIfTI for DWI. Neuroimage 2010, 51:665-676.
29. Patel V., Shi Y., Thompson P.M., Toga A.W. Mesh-based spherical deconvolution: a flexible approach to reconstruction of non-negative fiber orientation distributions. Neuroimage 2010, 51:1071-1081.
30. Peng H., Orlichenko A., Dawe R.J., Agam G., Zhang S., Arfanakis K. Development of a human brain diffusion tensor template. Neuroimage 2009, 46:967-980.
31. Pierpaoli C., Walker L., Irfanoglu M.O., Barnett A., Basser P., Chang L.-C., Koay C., Pajevic S., Rohde G., Sarlls J., Wu M. TORTOISE: an integrated software package for processing of diffusion MRI data. Proc Int Soc Magn Reson Med, Stockholm, Sweden 2010, 1597.
32. Pipe J.G., Zwart N. Turboprop: improved PROPELLER imaging. Magn. Reson. Med. 2006, 55:380-385.
33. Raffelt D., Tournier J.D., Fripp J., Crozier S., Connelly A., Salvado O. Symmetric diffeomorphic registration of fibre orientation distributions. Neuroimage 2011, 56:1171-1180.
34. Schmitt B., Duclap D., Lebois A., Guevara P., Zhang H., Assaf Y., Poupon F., Riviere D., Cointepas Y., Mangin J., Poupon C. A novel probabilistic connectivity atlas for the human connectome: the CONNECT/ARCHI atlas. Proc Int Soc Magn Reson Med, Salt Lake City, Utah 2013, 3155.
35. Setsompop K., Kimmlingen R., Eberlein E., Witzel T., Cohen-Adad J., McNab J.A., Keil B., Tisdall M.D., Hoecht P., Dietz P., Cauley S.F., Tountcheva V., Matschl V., Lenz V.H., Heberlein K., Potthast A., Thein H., Van Horn J., Toga A., Schmitt F., Lehne D., Rosen B.R., Wedeen V., Wald L.L. Pushing the limits of in vivo diffusion MRI for the Human Connectome Project. Neuroimage 2013, 80:220-230.
36. Sotiropoulos S.N., Jbabdi S., Xu J., Andersson J.L., Moeller S., Auerbach E.J., Glasser M.F., Hernandez M., Sapiro G., Jenkinson M., Feinberg D.A., Yacoub E., Lenglet C., Van Essen D.C., Ugurbil K., Behrens T.E. Advances in diffusion MRI acquisition and processing in the Human Connectome Project. Neuroimage 2013, 80:125-143.
37. Sullivan E.V., Pfefferbaum A. Diffusion tensor imaging and aging. Neurosci. Biobehav. Rev. 2006, 30:749-761.
38. Tournier J.D., Calamante F., Connelly A. Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution. Neuroimage 2007, 35:1459-1472.
39. Tournier J.D., Calamante F., Connelly A. MRtrix: diffusion tractography in crossing fiber regions. Int. J. Imaging Syst. Technol. 2012, 22:53-66.
40. Tuch D.S. Q-Ball imaging. Magn. Reson. Med. 2004, 52:1358-1372.
41. Tuch D.S., Reese T.G., Wiegell M.R., Makris N., Belliveau J.W., Wedeen V.J. High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magn. Reson. Med. 2002, 48:577-582.
42. Van Hecke W., Sijbers J., D'Agostino E., Maes F., De Backer S., Vandervliet E., Parizel P.M., Leemans A. On the construction of an inter-subject diffusion tensor magnetic resonance atlas of the healthy human brain. Neuroimage 2008, 43:69-80.
43. Varentsova A., Zhang S., Arfanakis K. Probabilistic atlas of the adult human brain white matter. Proc Int Soc Magn Reson Med, Salt Lake City, Utah 2013, 2128.
44. Wang Y., Gupta A., Liu Z., Zhang H., Escolar M.L., Gilmore J.H., Gouttard S., Fillard P., Maltbie E., Gerig G., Styner M. DTI registration in atlas based fiber analysis of infantile Krabbe disease. Neuroimage 2011, 55:1577-1586.
45. Wedeen V.J., Wang R.P., Schmahmann J.D., Benner T., Tseng W.Y., Dai G., Pandya D.N., Hagmann P., D'Arceuil H., de Crespigny A.J. Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers. Neuroimage 2008, 41:1267-1277.
46. Yap P.T., Chen Y., An H., Yang Y., Gilmore J.H., Lin W., Shen D. SPHERE: SPherical Harmonic Elastic REgistration of HARDI data. Neuroimage 2011, 55:545-556.
47. Yeh F.C., Tseng W.Y. NTU-90: a high angular resolution brain atlas constructed by q-space diffeomorphic reconstruction. Neuroimage 2011, 58:91-99.
48. Zhang H., Yushkevich P.A., Alexander D.C., Gee J.C. Deformable registration of diffusion tensor MR images with explicit orientation optimization. Med. Image Anal. 2006, 10:764-785.
49. Zhang H., Yushkevich P., Rueckert D., Gee J. A computational DTI template for aging studies. Proc Int Soc Magn Reson Med, Honolulu, Hawaii 2009, 3230.
50. Zhang S., Peng H., Dawe R.J., Arfanakis K. Enhanced ICBM diffusion tensor template of the human brain. Neuroimage 2011, 54:974-984.