Optimization and enhancement of H&E stained microscopical images by applying bilinear interpolation method on lab color mode

Theoretical Biology and Medical Modelling

Volumn 11, Issue 1, 2014, Pages

  Kuru, Kaya ^a  

^a GULHANE SCHOOL OF MEDICINE   (Turkey)

Author keywords

Bilinear interpolation; H E staining technique; Koehler illumination; LAB color; Microscopic digital images; Non uniform illumination

Indexed keywords

ARTICLE; COLOR; METHODOLOGY; MICROSCOPY; STAINING;

COLOR; MICROSCOPY; STAINING AND LABELING;

EID: 84894268007     PISSN: None     EISSN: 17424682     Source Type: Journal    
DOI: 10.1186/1742-4682-11-9     Document Type: Article

References (20)

1. Quantification of histochemical staining by color deconvolution. Ruifrok AC, Johnston DA, Anal Quant Cytol Histol 2001 23 291 299 11531144 (Pubitemid 32762920)
2. Kumar GL, Kiernan JA, Special stains and H&E California, Dako: Carpinteria 2 2010
3. Digital imaging new opportunities for microscopy. Drent P, Nikon 2010 http://www.microscopyu.com/articles/digitalimaging/drentdigital.html
4. Microscope alignment for kohler illumination. Parry-Hill M, Sutter RT, Davidson MW, Nikon 2004 http://www.microscopyu.com/tutorials/java/kohler/
5. Introduction to digital imaging in microscopy. Hazelwood KL, Olenych SG, Griffin JD, Murphy CS, Cathcart JA, Davidson MW, Nikon 2009 http://hamamatsu. magnet.fsu.edu/articles/microscopyimaging.html
6. Biomedical image processing. Sternberg S, IEEE Comput 1983 16 22 34
7. Retrospective shading correction based on entropy minimization. Likar B, Maintz JB, Viergever MA, Pernus F, J Microsc 2000 197 285 295 10.1046/j.1365-2818.2000.00669.x 10692132 (Pubitemid 30143808)
8. Correction of uneven illumination (vignetting) in digital microscopy images. Leong FJMN, Brady M, McGee JOD, J Clin Pathol 2003 56 619 621 10.1136/jcp.56.8.619 12890815 (Pubitemid 36976363)
9. Quantification of immunohistochemistry-issues concerning methods, utility and semiquantitative assessment I. Walker RA, Histopathology 2006 49 406 410 10.1111/j.1365-2559.2006.02514.x 16978204 (Pubitemid 44401548)
10. Quantification of immunohistochemistry-issues concerning methods, utility and semiquantitative assessment II. Taylor C, Levenson R, Histopathology 2006 49 411 424 10.1111/j.1365-2559.2006.02513.x 16978205 (Pubitemid 44401549)
11. Retrospective shading correction algorithm based on signal envelope estimation. Reyes-Aldasoro CC, Electron Lett 2009 45 454 456 10.1049/el.2009.0320
12. ImmunoRatio: a publicly available web application for quantitative image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67. Tuominen VJ, Ruotoistenmäki S, Viitanen A, Jumppanen M, Isola J, Breast Canc Res 2010 12 56 10.1186/bcr2615
13. Unsupervised color decomposition of histologically stained tissue samples. Rabinovich A, Agarwal S, Laris CA, Price JH, Belongie S, et al. Advances in Neural Information Processing Systems 16 USA: MIT Press, Thrun S, 2004 575 583
14. Fairchild M, Color Appearance Models UK: J Wiley Press Wiley-IS&T Series in Imaging Science and T. 2005
15. Prediction of munsell appearance scales using various color appearance models. Wyble DR, Fairchild MD, Color Res Appl 2000 25 132 144 10.1002/(SICI)1520-6378(200004)25:2<132::AID-COL8>3.0.CO;2-D (Pubitemid 30560095)
16. Dalheimer K, Welsh M, Running Linux USA: O'Reilly Press 5 2006
17. Gonzalez RC, Woods RE, Digital Image Processing USA: Prentice Hall Press 3 2008
18. Ccd signal-to-noise ratio. Fellers TJ, Vogt KM, Davidson MW, Nikon Nikon 2009 http://www.microscopyu.com/tutorials/java/digitalimaging/signaltonoise/
19. A bilinear interpolation based approach for optimizing hematoxylin and eosin stained microscopical images. Kuru K, Girgin S, The Procedings of 6th IAPR International Conference on Pattern Recognition in Bioinformatics Berlin-Heidelberg: Springer, Loog M, Wessels L, Reinders MJT, Ridder D, 2011 168 178
20. Colour space conversions. Ford A, Roberts A, Westminster University (August 1998) Technical Report http://biology.duke.edu/johnsenlab/pdfs/tech/ colorconversion.pdf