메뉴 건너뛰기




Volumn 12, Issue 1, 2014, Pages 52-56

Meta-QC-chain: Comprehensive and fast quality control method for metagenomic data

Author keywords

Metagenomic data; Next generation sequencing; Parallel computing; Quality control

Indexed keywords

METAGENOMIC DATA; NEXT-GENERATION SEQUENCING; PARALLEL COMPUTING; QUALITY CONTROL;

EID: 84894254948     PISSN: 16720229     EISSN: 22103244     Source Type: Journal    
DOI: 10.1016/j.gpb.2014.01.002     Document Type: Article
Times cited : (21)

References (8)
  • 1
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis E.R. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24:133-141.
    • (2008) Trends Genet , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 2
    • 84871979584 scopus 로고    scopus 로고
    • Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
    • Bokulich N.A., Subramanian S., Faith J.J., Gevers D., Gordon J.I., Knight R., et al. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods 2013, 10:57-59.
    • (2013) Nat Methods , vol.10 , pp. 57-59
    • Bokulich, N.A.1    Subramanian, S.2    Faith, J.J.3    Gevers, D.4    Gordon, J.I.5    Knight, R.6
  • 3
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • Schmieder R., Edwards R. Quality control and preprocessing of metagenomic datasets. Bioinformatics 2011, 27:863-864.
    • (2011) Bioinformatics , vol.27 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 4
    • 84856468953 scopus 로고    scopus 로고
    • NGS QC Toolkit: a toolkit for quality control of next generation sequencing data
    • Patel R.K., Jain M. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PloS One 2012, 7:e30619.
    • (2012) PloS One , vol.7
    • Patel, R.K.1    Jain, M.2
  • 5
    • 84875647144 scopus 로고    scopus 로고
    • QC-Chain: fast and holistic quality control method for next-generation sequencing data
    • Zhou Q., Su X., Wang A., Xu J., Ning K. QC-Chain: fast and holistic quality control method for next-generation sequencing data. PLoS One 2013, 8:e60234.
    • (2013) PLoS One , vol.8
    • Zhou, Q.1    Su, X.2    Wang, A.3    Xu, J.4    Ning, K.5
  • 6
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
    • Quast C., Pruesse E., Yilmaz P., Gerken J., Schweer T., Yarza P., et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 2013, 41:D590-D596.
    • (2013) Nucleic Acids Res , vol.41
    • Quast, C.1    Pruesse, E.2    Yilmaz, P.3    Gerken, J.4    Schweer, T.5    Yarza, P.6
  • 7
    • 84869066862 scopus 로고    scopus 로고
    • MetaSee: an interactive and extendable visualization toolbox for metagenomic sample analysis and comparison
    • Song B., Su X., Xu J., Ning K. MetaSee: an interactive and extendable visualization toolbox for metagenomic sample analysis and comparison. PLoS One 2012, 7:e48998.
    • (2012) PLoS One , vol.7
    • Song, B.1    Su, X.2    Xu, J.3    Ning, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.