The small genetic world of Seriatopora hystrix

Network Biology

Volumn 2, Issue 1, 2012, Pages 1-15

  Kininmonth, Stuart ^a   van Oppen, Madeleine ^a   Castine, Sarah ^b   Peplow, Lesa ^a   Lutz, Adrian ^a  

^a AUSTRALIAN INSTITUTE OF MARINE SCIENCE   (Australia)

^b JAMES COOK UNIVERSITY   (Australia)

Author keywords

Coral dispersal; Networks; Seriatopora hystrix; Small world topology

Indexed keywords

EID: 84894091301     PISSN: None     EISSN: 22208879     Source Type: Journal    
DOI: 10.0000/issn-2220-8879-networkbiology-2012-v2-0001     Document Type: Article

References (65)

1. Almany GR, Connolly S, Heath DD, et al. 2009. Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs. Coral Reefs, 28: 339-351
2. Armsworth PR. 2002. Recruitment limitation, population regulation and larval connectivity in reef fish metapopulations. Ecology, 83: 1092-1104
3. Ayre D, Dufty S.1994. Evidence for restricted gene flow in the viviparous coral Seriatopora hystrix on Australia's Great Barrier Reef. Evolution, 48(4): 1183-1201
4. Ayre D, Hughes T. 2004. Climate change, genotypic diversity and gene flow in reef-building corals. Ecology Letters, 7: 273-278
5. Barabasi Al. 2002. Linked: the New Science of Networks. Perseus Publishing, Cambridge, USA
6. Barabasi Al, Albert R. 1999. Emergence of scaling in random networks. Science, 286: 509-512
7. Bascompte J. 2009. Disentangling the web of life. Science, 325: 416-419
8. Baums IB, Paris CB, Cherubin LM. 2006. A bio-oceanographic filter to larval dispersal in a reef-building coral. Limnology and Oceanography, 51(5): 1969-1981
9. Beger M, Simon L, Game ET, et al. 2010. Incorporating functional ecological connectivity into spatial decision making for conservation. Conservation Letters, 4(5): 359-368
10. Berkelmans R, De'ath G, Kininmonth SJ, et al. 2004. A comparison of the 1998 and 2002 coral bleaching events on the Great Barrier Reef: spatial correlation, patterns and predictions. Coral Reefs, 23: 74-83
11. Bongaerts P, Riginos C, Ridgway T, et al. 2010. Genetic divergence across habitats in the widespread coral Seriatopora hystrix and its associated symbiodinium. PloS One, 5(5): e10971
12. Brzustowski J. 2002. Doh assignment test calculator. http://www2.biology.ualberta.ca/jbrzusto/Doh.php
13. Cowen RK, Gawarkiewicz G, Pineda JS, et al. 2002. Population connectivity in marine systems. National Science Foundation, Durango, Colorado, USA
14. Csardi G, Nepusz T. 2006. The igraph software package for complex network research. InterJournal Complex Systems: 1695. http://igraph.sf.net
15. De'ath G, Lough JM, Fabricius K. 2009. Declining coral calcification on the Great Barrier Reef. Science, 323: 116-119
16. Dormann CF. 2011. How to be a specialist? Quantifying specialisation in pollination networks. Network Biology, 1(1): 1-20
17. Erdos P, Renyi A. 1959. On random graphs. Publicationes Mathematicae, 6: 290-297
18. Ferrarini A. 2011. Network graphs unveil landscape structure and changes. Network Biology, 1(2): 121-126
19. Fortuna MA, Albaladejo RG, Fernandez L, et al. 2009. Networks of spatial genetic variation across species. Proceedings of the National Academy of Sciences of U.S.A., 106(45): 19044-19049
20. Gaedke U. 2008. Ecological Networks. In: Analysis of Biological Networks (Junker B, Schreiber F, eds). Wiley-Interscience, Hoboken, USA
21. Game E, Watts ME, Wooldridge S, et al. 2008. Planning for persistence in marine reserves: a question of catastrophic importance. Ecological Applications, 18(3): 670-680
22. Game ET, McDonald-Madden E, Puotinen ML, et al.2008. Should we protect the strong or the weak? Risk, resilience and the selection of marine protected areas. Conservation Biology, 22: 1619-1629
23. Gardner TG, Côté IM, Gill JA, et al. 2005. Hurricanes and Caribbean coral reefs: Impacts, recovery patterns, and role in long-term decline. Ecology, 86(1): 174-184
24. Green DG, Sadedin S. 2005. Interactions matter- complexity in landscapes and ecosystems. Ecological Complexity, 2: 117-130
25. Hellberg ME. 2007. Footprints on water: the genetic wake of dispersal among reefs. Coral Reefs, 26: 463-473
26. Hodgson JA, Thomas CD, Wintle B, et al. 2009. Climate change, connectivity anc conservation decision making: back to basics. Journal of Applied Ecology, 46: 964-969
27. Hopley D. 1982. The geomorphology of the Great Barrier Reef:Quaternary development of coral reefs. John Wiley-Interscience, New York, USA
28. Hughes T, Baird AH, et al. 2003. Climate change, human impacts, and the resilience of coral reefs. Science, 301: 929-933
29. Hughes T, Baird AH, Dinsdale EA, et al. 1999. Patterns of recruitment and abundance of corals along the Great Barrier Reef. Nature, 397: 59-63
30. Hughes T, Baird AH, Dinsdale EA, et al. 2000. Supply-side ecology works both ways: The link between benthic adults, fecundity and larval recruits. Ecology, 81(8): 2241-2249
31. James M, Armsworth P, Mason L, et al. 2002. The structure of reef fish metapopulations: modelling larval dispersal and retention patterns. Proceedings of the Rotal Society of London Series B, 269: 2079-2086
32. Jones GP, Planes S, Thorrold SR. 2005. Coral reef fish larvae settle close to home. Current Biology, 15(14): 1314-1318
33. Kerrigan B, Breen D, De'ath G, et al. 2010. Classifying the Biodiversity of the Great Barrier Reef World Heritage Area. Research Publication 104. Great Barrier Marine Park Authority: 29, Townsville, USA
34. Kininmonth S, Beger M, Bode M, et al. 2011. Dispersal connectivity and reserve selection for marine conservation. Ecological Modelelling, 222: 1272-1282
35. Kininmonth S, De'ath G, Possingham HP. 2010. Graph theoretic topology of the Great but small Barrier Reef world. Theoretical Ecology, 3(2): 75
36. Kininmonth S, van Oppen M, Possingham H. 2010. Determining the community structure of the coral Seriatopora hystrix from hydrodynamic and genetic networks. Ecological Modelling, 221: 2870-2880
37. Legrand S, Deleersnijder E, Hanert E, et al. 2006. High resolution unstructured meshes for hydrodynamic models of the Great Barrier Reef, Australia. Estuarine, Coastal and Shelf Science, 68: 36-46
38. Leskovec J, Kleinberg J, Faloutsos C. 2007. Graph Evolution: Densification and Shrinking Diameters. ACM Transactions on Knowledge Discovery from Data, 1(1) (article 2)
39. Lubchenco J, Palumbi SR, Gaines SD, et al. 2003. Plugging the hole in the ocean: The emerging science of marine reserves. Ecological Applications, 13(1): S3-S7
40. Luick JL, Mason LB, Hardy T, et al. 2007. Circulation in the Great Barrier Reef Lagoon using numerical tracers and in situ data. Continental Shelf Research, 27: 757-778
41. Marshall DJ, Monro K, Bode M, et al. 2010. Phenotype-environment mismatches reduce connectivity in the sea. Ecology Letters, 13: 128-140
42. Milgram S. 1967. The small world problem. Psychology Today, 2: 61-67
43. Mumby P. 1999. Can Caribbean coral populations be modelled at metapopulation scales? Marine Ecology Progress Series, 180: 275-288
44. Newman MEJ. 2006. Modularity and community structure in networks. Proceedings of the National Academy of Sciences of U.S.A, 103(23): 8577-8582
45. Noreen AM, Harrison P, Van Oppen M. 2009. Genetic diversity and connectivity in a brooding reef coral at the limit of its distribution. Proceedings of the Royal Society of Lodon Series B, 276: 3927-3935
46. Paetkau D, Waits LP, Clarkson P, et al. 1997. An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations. Genetics, 147: 1943-1957
47. Palumbi SR. 2003. Population genetics, demographic connectivity and the design of marine reserves.Ecological Applications, 13(1): 5146-5158
48. Possingham HP, Roughgarden J. 1990. Spatial population dynamics of a marine organism with a complex life cycle. Ecology, 71(3): 973-985
49. Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics, 155: 945-959
50. Roughgarden J, Gaines SD, Possingham HP. 1988. Recruitment dynamics in complex life cycles. Science, 241(4872): 1460-1466
51. Steuer R, Lopez G. 2008. Global Network Properties. In: Analysis of Biological Networks (Junker B, Schreiber F, eds). Wiley-Interscience, Hoboken, USA
52. Treml E, Halpin PN, Urban D, et al. 2008. Modelling population connectivity by ocean currents, a graphtheoretic approach for marine conservation. Landscape Ecology, 23: 19-36
53. Underwood JN, Smith LD, Van Oppen MJH, et al. 2007. Multiple scales of genetic connectivity in a brooding coral on isolated reefs following catastrophic bleaching. Molecular Ecology, 16: 771-784
54. Underwood JN, Smith LD, Van Oppen MJH, et al. 2009. Ecologically relevant dispersal of corals on isolated reefs: implications for managing resilience. Ecological Applicatons, 19(1): 18-29
55. Urban D, Keitt T. 2001. Landscape connectivity: A graph-theoretic perspective. Ecology, 82(5): 1205-1218
56. van Oppen MJH, Gates RD. 2006. Conservation genetics and the resilience of reef-building corals. Molecular Ecology, 15: 3863-3883
57. van Oppen MJH, Bongaerts P, Underwood JN, et al. 2011. The role of deep reefs in shallow reef recovery: an assessment of vertical connectivity in a brrooding coral from west and east Australia. Molecular Ecology, 20: 1647-1660
58. van Oppen MJH, Lutz A, De'ath G, et al. 2008. Genetic traces of recent long-distance dispersal in a predominantly self-recruiting coral. PloS One, 3(10): 1-12
59. Veron JEN. 1986. Corals of Australia and the Indo-Pacific. Angus & Robertson, Sydney, Australia
60. Veron JEN. 2000. Corals of the World. Australian Institute of Marine Science, Australia
61. Wakeford M, Done T, Johnson CR. 2008. Decadal trends in a coral community and evidence of changed disturbance regime. Coral Reefs, 27: 1-13
62. Watts DJ, Strogatz SH. 1998. Collective dynamics of 'small-world' networks. Nature, 393(6684): 440-442
63. Werner FR. Cowen and C. Paris. 2007. Coupled biological and physical models. Oceanography, 20(3): 54-69
64. Zhang WJ. 2011a. Constructing ecological interaction networks by correlation analysis: hints from community sampling. Network Biology, 1(2): 81-98
65. Zhang WJ. 2011b. Network Biology: an exciting frontier science. Network Biology, 1(1): 79-80