메뉴 건너뛰기




Volumn 21, Issue 2, 2014, Pages 200-203

A sea of standards for omics data: Sink or swim?

Author keywords

[No Author keywords available]

Indexed keywords

DATA SHARING; DATA STANDARDS; INFORMATION DISSEMINATION; TERMINOLOGY;

EID: 84894044313     PISSN: 10675027     EISSN: 1527974X     Source Type: Journal    
DOI: 10.1136/amiajnl-2013-002066     Document Type: Article
Times cited : (53)

References (36)
  • 1
    • 84894050750 scopus 로고    scopus 로고
    • Request for Information (RFI): input into the Deliberations of the Advisory Committee to the NIH Director Working Group on Data and Informatics. (accessed 30 May 2013)
    • Request for Information (RFI): input into the Deliberations of the Advisory Committee to the NIH Director Working Group on Data and Informatics. 2012. http://grants.nih.gov/ grants/guide/notice-files/NOT-OD-12-032.html (accessed 30 May 2013).
    • (2012)
  • 2
    • 84894045717 scopus 로고    scopus 로고
    • National Institutes of Health. NIH Data Sharing Policies. (accessed 1 Jul 2013)
    • National Institutes of Health. NIH Data Sharing Policies. 2013. http://www.nlm.nih. gov/NIHbmic/nih_data_sharing_policies.html (accessed 1 Jul 2013).
    • (2013)
  • 3
    • 84894048574 scopus 로고    scopus 로고
    • Upcoming Changes to Public Access Policy Reporting Requirements and Related NIH Efforts to Enhance Compliance. (accessed 16 May 2013)
    • Upcoming Changes to Public Access Policy Reporting Requirements and Related NIH Efforts to Enhance Compliance. 2012. http://grants.nih.gov/grants/guide/notice-files/ NOT-OD-12-160.html (accessed 16 May 2013).
    • (2012)
  • 4
    • 84894082412 scopus 로고    scopus 로고
    • National Science Foundation. NSF Supports U.S. Participation in the Launch of a New International Effort Aimed at Making Data Easier to Share Among Researchers. (accessed 30 May 2013)
    • National Science Foundation. NSF Supports U.S. Participation in the Launch of a New International Effort Aimed at Making Data Easier to Share Among Researchers. 2013. http://www.nsf.gov/news/news_summ.jsp?cntn_id=127299 (accessed 30 May 2013).
    • (2013)
  • 5
    • 84894048877 scopus 로고    scopus 로고
    • Federal Register. Request for Information: Public Access to Digital Data Resulting From Federally Funded Scientific Research. (accessed 30 May 2013)
    • Federal Register. Request for Information: Public Access to Digital Data Resulting From Federally Funded Scientific Research. 2011. https://www.federalregister.gov/ articles/2011/11/04/2011-28621/request-for-information-public-access-to-digitaldata-resulting-from-federally-funded-scientific (accessed 30 May 2013).
    • (2011)
  • 6
    • 84877338599 scopus 로고    scopus 로고
    • Nature Publishing, Group., Raising, standards
    • [Editorial]. doi:10.1038/nbt.2588
    • Nature Publishing Group. Raising standards. Nat biotech [Editorial]. 2013;31:366. doi:10.1038/nbt.2588.
    • (2013) Nat biotech , vol.31 , pp. 366
  • 7
    • 80052526021 scopus 로고    scopus 로고
    • Public availability of published research data in high-impact journals
    • Alsheikh-Ali A, Qureshi W, Al-Mallah M, et al. Public availability of published research data in high-impact journals. PLoS One 2011;6:e24357
    • (2011) PLoS One , vol.6
    • Alsheikh-Ali, A.1    Qureshi, W.2    Al-Mallah, M.3
  • 8
    • 70349882123 scopus 로고    scopus 로고
    • Megascience 'Omics data sharing'
    • Field D, Sansone S-A, Collis A, et al. Megascience. 'Omics data sharing'. Science 2009;326:234-6.
    • (2009) Science , vol.326 , pp. 234-236
    • Field, D.1    Sansone, S.-A.2    Collis, A.3
  • 9
    • 84863393183 scopus 로고    scopus 로고
    • Toward interoperable bioscience data
    • Sansone SA, Rocca-Serra P, Field D, et al. Toward interoperable bioscience data. Nat Genet 2012;44:121-6.
    • (2012) Nat Genet , vol.44 , pp. 121-126
    • Sansone, S.A.1    Rocca-Serra, P.2    Field, D.3
  • 10
    • 84894038626 scopus 로고    scopus 로고
    • National Research Council. Toward Precision Medicine: building a knowledge network for biomedical research and a new taxonomy of disease. The National Academies Press. 2011
    • National Research Council. Toward Precision Medicine: building a knowledge network for biomedical research and a new taxonomy of disease. The National Academies Press. 2011.
  • 11
    • 70049099472 scopus 로고    scopus 로고
    • Lowering industry firewalls: pre-competitive informatics initiatives in drug discovery
    • Barnes MR, Harland L, Foord SM, et al. Lowering industry firewalls: pre-competitive informatics initiatives in drug discovery. Nat Rev Drug Discov 2009;8:701-8.
    • (2009) Nat Rev Drug Discov , vol.8 , pp. 701-708
    • Barnes, M.R.1    Harland, L.2    Foord, S.M.3
  • 12
    • 70249130851 scopus 로고    scopus 로고
    • Data's shameful neglect
    • Waldrop M. Data's shameful neglect. Nature 2009;461:145.
    • (2009) Nature , vol.461 , pp. 145
    • Waldrop, M.1
  • 13
    • 84894045862 scopus 로고    scopus 로고
    • On the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunities
    • Sansone S-A, Rocca-Serra P. On the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunities. GigaScience 2012;1:1-3.
    • (2012) GigaScience , vol.1 , pp. 1-3
    • Sansone, S.-A.1    Rocca-Serra, P.2
  • 14
    • 84877245845 scopus 로고    scopus 로고
    • Metcalfe's law and the biology information commons
    • Friend SH, Norman TC. Metcalfe's law and the biology information commons. Nat Biotechnol 2013;31:297-303.
    • (2013) Nat Biotechnol , vol.31 , pp. 297-303
    • Friend, S.H.1    Norman, T.C.2
  • 15
    • 84894061821 scopus 로고    scopus 로고
    • DRYAD. Dryad Digital Repository. (accessed 31 May 2013)
    • DRYAD. Dryad Digital Repository. http://datadryad.org/ (accessed 31 May 2013).
  • 16
    • 84894093098 scopus 로고    scopus 로고
    • One Mind. One Mind for Research
    • One Mind. One Mind for Research. http://1mind4research.org/
  • 17
    • 84894089747 scopus 로고    scopus 로고
    • ASCO's continuous learning prototype passes proof-of-principle test
    • [serial on the Internet]
    • Eastman P. ASCO's continuous learning prototype passes proof-of-principle test. Oncol Times [serial on the Internet] 2013;35: http://journals.lww.com/oncology-times/ Citation/2013/05100/ASCO_s_Continuous_Learning_Prototype_Passes.4.aspx.
    • (2013) Oncol Times , pp. 35
    • Eastman, P.1
  • 18
    • 84894047924 scopus 로고    scopus 로고
    • European Translational Information and Knowledge Management Services (accessed 30 May 2013)
    • European Translational Information and Knowledge Management Services. http:// www.etriks.org (accessed 30 May 2013).
  • 19
    • 84894092690 scopus 로고    scopus 로고
    • National Institutes of Health. Big data to knowledge. (accessed 1 Jul 2013)
    • National Institutes of Health. Big data to knowledge. 2013. https://commonfund. nih.gov/bd2k/index.aspx (accessed 1 Jul 2013).
    • (2013)
  • 21
    • 84878714289 scopus 로고    scopus 로고
    • Geneticists push for global data-sharing
    • Hayden EC. Geneticists push for global data-sharing. Nature 2013;498: 16-17.
    • (2013) Nature , vol.498 , pp. 16-17
    • Hayden, E.C.1
  • 22
    • 35948989284 scopus 로고    scopus 로고
    • The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
    • Smith B, Ashburner M, Rosse C, et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol 2007;25: 1251-5.
    • (2007) Nat Biotechnol , vol.25 , pp. 1251-1255
    • Smith, B.1    Ashburner, M.2    Rosse, C.3
  • 23
    • 67849128700 scopus 로고    scopus 로고
    • BioPortal: ontologies and integrated data resources at the click of a mouse
    • (Web Server issue): W170-3
    • Noy NF, Shah NH, Whetzel PL, et al. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res 2009;37 (Web Server issue): W170-3.
    • (2009) Nucleic Acids Res , pp. 37
    • Noy, N.F.1    Shah, N.H.2    Whetzel, P.L.3
  • 24
    • 84894034166 scopus 로고    scopus 로고
    • Common Data Element Resource Portal. (accessed 23 May 2013)
    • Common Data Element Resource Portal. 2013. http://www.nlm.nih.gov/cde/ (accessed 23 May 2013).
    • (2013)
  • 25
    • 37849007693 scopus 로고    scopus 로고
    • caCORE version 3 implementation of a model driven, service-oriented architecture for semantic interoperability
    • Komatsoulis GA, Warzel DB, Hartel FW, et al. caCORE version 3: implementation of a model driven, service-oriented architecture for semantic interoperability. J Biomed Inform 2008;41106-23.
    • (2008) J Biomed Inform , pp. 41106-41123
    • Komatsoulis, G.A.1    Warzel, D.B.2    Hartel, F.W.3
  • 27
    • 84894060788 scopus 로고    scopus 로고
    • International Organization for Standardisation. Standards. (accessed 1 Jul 2013)
    • International Organization for Standardisation. Standards. http://www.iso.org/iso/ home/standards.htm (accessed 1 Jul 2013).
  • 28
    • 84894072907 scopus 로고    scopus 로고
    • Ontology-based knowledge representation of experiment metadata in biological data mining
    • In: Chen J, Lenardi S, eds. Chapman & Hall
    • Scheuermann RH, Kong M, Dahlke C, et al. Ontology-based knowledge representation of experiment metadata in biological data mining. In: Chen J, Lenardi S, eds. Biological data mining. Chapman & Hall, 2010.
    • (2010) Biological data mining
    • Scheuermann, R.H.1    Kong, M.2    Dahlke, C.3
  • 30
    • 50249171518 scopus 로고    scopus 로고
    • Database modeling and design: logical design: Morgan Kaufmann
    • Teorey TJ, Lightstone SS, Nadeau T, et al. Database modeling and design: logical design: Morgan Kaufmann. 2011.
    • (2011)
    • Teorey, T.J.1    Lightstone, S.S.2    Nadeau, T.3
  • 32
    • 33644532256 scopus 로고    scopus 로고
    • Formal ontology for natural language processing and the integration of biomedical databases
    • Simon J, Dos Santos M, Fielding J, et al. Formal ontology for natural language processing and the integration of biomedical databases. Int J Med Inform 2006;75:224-31.
    • (2006) Int J Med Inform , vol.75 , pp. 224-231
    • Simon, J.1    Dos Santos, M.2    Fielding, J.3
  • 33
    • 32544451155 scopus 로고    scopus 로고
    • Fit-for-purpose method development and validation for successful biomarker measurement
    • Lee JW, Devanarayan V, Barrett YC, et al. Fit-for-purpose method development and validation for successful biomarker measurement. Pharm Res 2006;23:312-28.
    • (2006) Pharm Res , vol.23 , pp. 312-328
    • Lee, J.W.1    Devanarayan, V.2    Barrett, Y.C.3
  • 34
    • 45749118607 scopus 로고    scopus 로고
    • Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
    • Taylor CF, Field D, Sansone SA, et al. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol 2008;26:889-96.
    • (2008) Nat Biotechnol , vol.26 , pp. 889-896
    • Taylor, C.F.1    Field, D.2    Sansone, S.A.3
  • 35
    • 84894084115 scopus 로고    scopus 로고
    • Peering into peer-review at GigaScience
    • Edmunds SC. Peering into peer-review at GigaScience. GigaScience 2013;2:1-3.
    • (2013) GigaScience , vol.2 , pp. 1-3
    • Edmunds, S.C.1
  • 36
    • 84894027391 scopus 로고    scopus 로고
    • NPG. Scientific data. (accessed 8 Jul 2013)
    • NPG. Scientific data. 2013. http://www.nature.com/scientificdata/ (accessed 8 Jul 2013).
    • (2013)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.