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Volumn 28, Issue 4, 2014, Pages 396-408

Nucleosome loss leads to global transcriptional up-regulation and genomic instability during yeast aging

Author keywords

DNA rearrangement; Gene expression; Histone occupancy; Replicative aging

Indexed keywords

DNA REARRANGEMENT; GENE EXPRESSION; HISTONE OCCUPANCY; REPLICATIVE AGING;

EID: 84893931097     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.233221.113     Document Type: Article
Times cited : (250)

References (39)
  • 1
    • 31544446038 scopus 로고    scopus 로고
    • Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions
    • Adkins MW, Tyler JK. 2006. Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions. Mol Cell 21: 405-416.
    • (2006) Mol Cell , vol.21 , pp. 405-416
    • Adkins, M.W.1    Tyler, J.K.2
  • 2
    • 1542328960 scopus 로고    scopus 로고
    • Identification and distinct regulation of yeast TATA box-containing genes
    • Basehoar AD, Zanton SJ, Pugh BF. 2004. Identification and distinct regulation of yeast TATA box-containing genes. Cell 116: 699-709.
    • (2004) Cell , vol.116 , pp. 699-709
    • Basehoar, A.D.1    Zanton, S.J.2    Pugh, B.F.3
  • 4
    • 0021799352 scopus 로고
    • Ty elements transpose through an RNA intermediate
    • Boeke JD, Garfinkel DJ, Styles CA, Fink GR. 1985. Ty elements transpose through an RNA intermediate. Cell 40: 491-500.
    • (1985) Cell , vol.40 , pp. 491-500
    • Boeke, J.D.1    Garfinkel, D.J.2    Styles, C.A.3    Fink, G.R.4
  • 7
    • 84873395730 scopus 로고    scopus 로고
    • Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8-Tup1 corepressor
    • Chen K, Wilson MA, Hirsch C, Watson A, Liang S, Lu Y, Li W, Dent SY. 2013a. Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8-Tup1 corepressor. Genome Res 23: 312-322.
    • (2013) Genome Res , vol.23 , pp. 312-322
    • Chen, K.1    Wilson, M.A.2    Hirsch, C.3    Watson, A.4    Liang, S.5    Lu, Y.6    Li, W.7    Dent, S.Y.8
  • 12
    • 84864059329 scopus 로고    scopus 로고
    • In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae
    • Gossett AJ, Lieb JD. 2012. In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae. PLo S Genet 8: e1002771.
    • (2012) PLo S Genet , vol.8
    • Gossett, A.J.1    Lieb, J.D.2
  • 13
    • 0024261583 scopus 로고
    • Nucleosome loss activates yeast downstream promoters in vivo
    • Han M, Grunstein M. 1988. Nucleosome loss activates yeast downstream promoters in vivo. Cell 55: 1137-1145.
    • (1988) Cell , vol.55 , pp. 1137-1145
    • Han, M.1    Grunstein, M.2
  • 16
    • 0028556445 scopus 로고
    • Daughter cells of Saccharomyces cerevisiae from old mothers display a reduced life span
    • Kennedy BK, Austriaco NR Jr, Guarente L. 1994. Daughter cells of Saccharomyces cerevisiae from old mothers display a reduced life span. J Cell Biol 127: 1985-1993.
    • (1994) J Cell Biol , vol.127 , pp. 1985-1993
    • Kennedy, B.K.1    Austriaco Jr., N.R.2    Guarente, L.3
  • 17
    • 0031832807 scopus 로고    scopus 로고
    • Transposable elements and genome organization: A comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence
    • Kim JM, Vanguri S, Boeke JD, Gabriel A, Voytas DF. 1998. Transposable elements and genome organization: A comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8: 464-478.
    • (1998) Genome Res , vol.8 , pp. 464-478
    • Kim, J.M.1    Vanguri, S.2    Boeke, J.D.3    Gabriel, A.4    Voytas, D.F.5
  • 18
    • 40349106009 scopus 로고    scopus 로고
    • A new role of the rDNA and nucleolus in the nucleus-rDNA instability maintains genome integrity
    • Kobayashi T. 2008. A new role of the rDNA and nucleolus in the nucleus-rDNA instability maintains genome integrity. Bio-Essays 30: 267-272.
    • (2008) Bio-Essays , vol.30 , pp. 267-272
    • Kobayashi, T.1
  • 19
    • 2542612966 scopus 로고    scopus 로고
    • Methionine sulfoxide reductase regulation of yeast lifespan reveals reactive oxygen species-dependent and-independent components of aging
    • Koc A, Gasch AP, Rutherford JC, Kim HY, Gladyshev VN. 2004. Methionine sulfoxide reductase regulation of yeast lifespan reveals reactive oxygen species-dependent and-independent components of aging. Proc Natl Acad Sci 101: 7999-8004.
    • (2004) Proc Natl Acad Sci , vol.101 , pp. 7999-8004
    • Koc, A.1    Gasch, A.P.2    Rutherford, J.C.3    Kim, H.Y.4    Gladyshev, V.N.5
  • 21
    • 1542344026 scopus 로고    scopus 로고
    • The transcriptome of prematurely aging yeast cells is similar to that of telomerase-deficient cells
    • Lesur I, Campbell JL. 2004. The transcriptome of prematurely aging yeast cells is similar to that of telomerase-deficient cells. Mol Biol Cell 15: 1297-1312.
    • (2004) Mol Biol Cell , vol.15 , pp. 1297-1312
    • Lesur, I.1    Campbell, J.L.2
  • 22
    • 0035929571 scopus 로고    scopus 로고
    • Enhanced gluconeogenesis and increased energy storage as hallmarks of aging in Saccharomyces cerevisiae
    • Lin SS, Manchester JK, Gordon JI. 2001. Enhanced gluconeogenesis and increased energy storage as hallmarks of aging in Saccharomyces cerevisiae. J Biol Chem 276: 36000-36007.
    • (2001) J Biol Chem , vol.276 , pp. 36000-36007
    • Lin, S.S.1    Manchester, J.K.2    Gordon, J.I.3
  • 23
    • 70649106968 scopus 로고    scopus 로고
    • The mother enrichment program: A genetic system for facile replicative life span analysis in Saccharomyces cerevisiae
    • Lindstrom DL, Gottschling DE. 2009. The mother enrichment program: A genetic system for facile replicative life span analysis in Saccharomyces cerevisiae. Genetics 183: 413-422.
    • (2009) Genetics , vol.183 , pp. 413-422
    • Lindstrom, D.L.1    Gottschling, D.E.2
  • 24
    • 79953758066 scopus 로고    scopus 로고
    • Replicative age induces mitotic recombination in the ribosomal RNA gene cluster of Saccharomyces cerevisiae
    • Lindstrom DL, Leverich CK, Henderson KA, Gottschling DE. 2011. Replicative age induces mitotic recombination in the ribosomal RNA gene cluster of Saccharomyces cerevisiae. PLo S Genet 7: e1002015.
    • (2011) PLo S Genet , vol.7
    • Lindstrom, D.L.1    Leverich, C.K.2    Henderson, K.A.3    Gottschling, D.E.4
  • 25
    • 84863524526 scopus 로고    scopus 로고
    • Replicative and chronological aging in Saccharomyces cerevisiae
    • Longo VD, Shadel GS, Kaeberlein M, Kennedy B. 2012. Replicative and chronological aging in Saccharomyces cerevisiae. Cell Metab 16: 18-31.
    • (2012) Cell Metab , vol.16 , pp. 18-31
    • Longo, V.D.1    Shadel, G.S.2    Kaeberlein, M.3    Kennedy, B.4
  • 28
    • 0348184963 scopus 로고    scopus 로고
    • ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
    • Mizuguchi G, Shen X, Landry J, Wu WH, Sen S, Wu C. 2004. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303: 343-348.
    • (2004) Science , vol.303 , pp. 343-348
    • Mizuguchi, G.1    Shen, X.2    Landry, J.3    Wu, W.H.4    Sen, S.5    Wu, C.6
  • 29
    • 77957814604 scopus 로고    scopus 로고
    • Reduced histone biosynthesis and chromatin changes arising from a damage signal at telomeres
    • O'Sullivan RJ, Kubicek S, Schreiber SL, Karlseder J. 2010. Reduced histone biosynthesis and chromatin changes arising from a damage signal at telomeres. Nat Struct Mol Biol 17: 1218-1225.
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 1218-1225
    • O'Sullivan, R.J.1    Kubicek, S.2    Schreiber, S.L.3    Karlseder, J.4
  • 30
    • 0033523903 scopus 로고    scopus 로고
    • Mitochondrial DNA repairs double-strand breaks in yeast chromosomes
    • Ricchetti M, Fairhead C, Dujon B. 1999. Mitochondrial DNA repairs double-strand breaks in yeast chromosomes. Nature 402: 96-100.
    • (1999) Nature , vol.402 , pp. 96-100
    • Ricchetti, M.1    Fairhead, C.2    Dujon, B.3
  • 31
    • 80455124117 scopus 로고    scopus 로고
    • Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes
    • Rizzo JM, Mieczkowski PA, Buck MJ. 2011. Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes. Nucleic Acids Res 39: 8803-8819.
    • (2011) Nucleic Acids Res , vol.39 , pp. 8803-8819
    • Rizzo, J.M.1    Mieczkowski, P.A.2    Buck, M.J.3
  • 32
    • 0031459980 scopus 로고    scopus 로고
    • Extrachromosomal rDNA circles-a cause of aging in yeast
    • Sinclair DA, Guarente L. 1997. Extrachromosomal rDNA circles-a cause of aging in yeast. Cell 91: 1033-1042.
    • (1997) Cell , vol.91 , pp. 1033-1042
    • Sinclair, D.A.1    Guarente, L.2
  • 33
    • 0030053650 scopus 로고    scopus 로고
    • Loss of transcriptional silencing causes sterility in old mother cells of S. cerevisiae
    • Smeal T, Claus J, Kennedy B, Cole F, Guarente L. 1996. Loss of transcriptional silencing causes sterility in old mother cells of S. cerevisiae. Cell 84: 633-642.
    • (1996) Cell , vol.84 , pp. 633-642
    • Smeal, T.1    Claus, J.2    Kennedy, B.3    Cole, F.4    Guarente, L.5
  • 34
    • 0033646892 scopus 로고    scopus 로고
    • Up-regulation of genes encoding glycosylphosphatidylinositol (GPI)-attached proteins in response to cell wall damage caused by disruption of FKS1 in Saccharomyces cerevisiae
    • Terashima H, Yabuki N, Arisawa M, Hamada K, Kitada K. 2000. Up-regulation of genes encoding glycosylphosphatidylinositol (GPI)-attached proteins in response to cell wall damage caused by disruption of FKS1 in Saccharomyces cerevisiae. Mol Gen Genet 264: 64-74.
    • (2000) Mol Gen Genet , vol.264 , pp. 64-74
    • Terashima, H.1    Yabuki, N.2    Arisawa, M.3    Hamada, K.4    Kitada, K.5
  • 35
    • 0027174162 scopus 로고
    • Nuclear mutations in Saccharomyces cerevisiae that affect the escape of DNA from mitochondria to the nucleus
    • Thorsness PE, Fox TD. 1993. Nuclear mutations in Saccharomyces cerevisiae that affect the escape of DNA from mitochondria to the nucleus. Genetics 134: 21-28.
    • (1993) Genetics , vol.134 , pp. 21-28
    • Thorsness, P.E.1    Fox, T.D.2
  • 39
    • 38949154793 scopus 로고    scopus 로고
    • Spn1 regulates the recruitment of Spt6 and the Swi/Snf complex during transcriptional activation by RNA polymerase II
    • Zhang L, Fletcher AG, Cheung V, Winston F, Stargell LA. 2008. Spn1 regulates the recruitment of Spt6 and the Swi/Snf complex during transcriptional activation by RNA polymerase II. Mol Cell Biol 28: 1393-1403.
    • (2008) Mol Cell Biol , vol.28 , pp. 1393-1403
    • Zhang, L.1    Fletcher, A.G.2    Cheung, V.3    Winston, F.4    Stargell, L.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.